Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:135522239-136599917

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbvq1 2 126200000 to 135600000 9400000 QTL trabecular bone volume QTL 1
Gm31993 2 135541387 to 135550209 8822 + lncRNA gene predicted gene, 31993
9630028H03Rik 2 135580530 to 135583220 2690 - antisense lncRNA gene RIKEN cDNA 9630028H03 gene
Tssr26514 2 135583289 to 135583314 25 - TSS region transcription start site region 26514
D2Mit306 2 135590624 to 135590730 106 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 306
Rvfs1 2 135590624 to 173607823 38017199 QTL Rift Valley fever susceptibility 1
Tssr20368 2 135646517 to 135646529 12 + TSS region transcription start site region 20368
Platr3 2 135648907 to 135652063 3156 + lincRNA gene pluripotency associated transcript 3
Cpgi12321 2 135658505 to 135660122 1617 CpG island CpG island 12321
Plcb4 2 135659011 to 136014593 355582 + protein coding gene phospholipase C, beta 4
Tssr20369 2 135659159 to 135659174 15 + TSS region transcription start site region 20369
Tssr20370 2 135659293 to 135659357 64 + TSS region transcription start site region 20370
Tssr20371 2 135659540 to 135659591 51 + TSS region transcription start site region 20371
Tssr20372 2 135659593 to 135659604 11 + TSS region transcription start site region 20372
Tssr20373 2 135659625 to 135659650 25 + TSS region transcription start site region 20373
Tssr20374 2 135659685 to 135659713 28 + TSS region transcription start site region 20374
Gm14209 2 135669453 to 135670425 972 + sense intronic lncRNA gene predicted gene 14209
Tssr20375 2 135674247 to 135674275 28 + TSS region transcription start site region 20375
Gm14211 2 135686174 to 135693154 6980 - lincRNA gene predicted gene 14211
Tssr20376 2 135764880 to 135764908 28 + TSS region transcription start site region 20376
Tssr20377 2 135764910 to 135764935 25 + TSS region transcription start site region 20377
Tssr20378 2 135764958 to 135764973 15 + TSS region transcription start site region 20378
Gm14210 2 135811945 to 135812927 982 - lincRNA gene predicted gene 14210
Tssr20379 2 135929503 to 135929512 9 + TSS region transcription start site region 20379
Tssr20380 2 135987604 to 135987606 2 + TSS region transcription start site region 20380
Tssr20381 2 136007342 to 136007356 14 + TSS region transcription start site region 20381
Tssr666 2 136012008 to 136012014 6 + TSS region transcription start site region 666
Gm26227 2 136026151 to 136026251 100 - snRNA gene predicted gene, 26227
Tssr20382 2 136052180 to 136052199 19 + TSS region transcription start site region 20382
Lamp5 2 136052239 to 136069917 17678 + protein coding gene lysosomal-associated membrane protein family, member 5
Tssr20383 2 136057711 to 136057723 12 + TSS region transcription start site region 20383
Tssr20384 2 136057886 to 136057895 9 + TSS region transcription start site region 20384
Tssr20385 2 136057955 to 136057981 26 + TSS region transcription start site region 20385
Tssr20386 2 136058080 to 136058102 22 + TSS region transcription start site region 20386
Cpgi12322 2 136058095 to 136058388 293 CpG island CpG island 12322
Tssr667 2 136058104 to 136058107 3 + TSS region transcription start site region 667
Tssr20387 2 136058138 to 136058149 11 + TSS region transcription start site region 20387
Tssr20388 2 136058167 to 136058176 9 + TSS region transcription start site region 20388
Tssr20389 2 136058207 to 136058212 5 + TSS region transcription start site region 20389
Tssr20390 2 136058224 to 136058237 13 + TSS region transcription start site region 20390
Tssr20391 2 136058245 to 136058263 18 + TSS region transcription start site region 20391
Tssr20392 2 136058270 to 136058293 23 + TSS region transcription start site region 20392
Cpgi12323 2 136059254 to 136059681 427 CpG island CpG island 12323
Tssr20393 2 136059775 to 136059804 29 + TSS region transcription start site region 20393
Tssr20394 2 136060784 to 136060796 12 + TSS region transcription start site region 20394
Pak7 2 136081104 to 136387967 306863 - protein coding gene p21 (RAC1) activated kinase 7
2900018K06Rik 2 136120254 to 136120720 466 unclassified gene RIKEN cDNA 2900018K06 gene
Gm14218 2 136137006 to 136140161 3155 + antisense lncRNA gene predicted gene 14218
Gm39942 2 136179602 to 136183686 4084 + lncRNA gene predicted gene, 39942
D2Mit136 2 136353842 to 136353991 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 136
Cpgi12324 2 136387214 to 136387779 565 CpG island CpG island 12324
Tssr26515 2 136387691 to 136387698 7 - TSS region transcription start site region 26515
Tssr26516 2 136387740 to 136387798 58 - TSS region transcription start site region 26516
Tssr26517 2 136387804 to 136387820 16 - TSS region transcription start site region 26517
Tssr26518 2 136387929 to 136387985 56 - TSS region transcription start site region 26518
Tssr26519 2 136387994 to 136388005 11 - TSS region transcription start site region 26519
Gm14056 2 136399062 to 136399703 641 + pseudogene predicted gene 14056
Gm14054 2 136402719 to 136403422 703 - pseudogene predicted gene 14054
Gm32546 2 136445260 to 136486403 41143 - lncRNA gene predicted gene, 32546
Tssr20395 2 136501904 to 136501917 13 + TSS region transcription start site region 20395
Tssr20396 2 136501951 to 136501959 8 + TSS region transcription start site region 20396
Tssr20397 2 136501966 to 136501977 11 + TSS region transcription start site region 20397
Tssr20398 2 136501978 to 136501997 19 + TSS region transcription start site region 20398
Tssr668 2 136502036 to 136502039 3 + TSS region transcription start site region 668
Tssr20399 2 136502046 to 136502047 1 + TSS region transcription start site region 20399
Tssr20400 2 136502050 to 136502061 11 + TSS region transcription start site region 20400
Tssr20401 2 136502243 to 136502260 17 + TSS region transcription start site region 20401
Gm32746 2 136508158 to 136512187 4029 - lncRNA gene predicted gene, 32746
Tssr26520 2 136512015 to 136512062 47 - TSS region transcription start site region 26520
Cpgi12325 2 136532036 to 136532433 397 CpG island CpG island 12325
Tssr20402 2 136532180 to 136532215 35 + TSS region transcription start site region 20402
Tssr20403 2 136532243 to 136532259 16 + TSS region transcription start site region 20403
Tssr20404 2 136532266 to 136532287 21 + TSS region transcription start site region 20404
Ankef1 2 136532321 to 136555854 23533 + protein coding gene ankyrin repeat and EF-hand domain containing 1
Gm32659 2 136533833 to 136714163 180330 - lncRNA gene predicted gene, 32659
Cpgi12326 2 136549764 to 136550049 285 CpG island CpG island 12326
Tssr669 2 136552912 to 136552920 8 + TSS region transcription start site region 669