Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:13507036-15107039

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200 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trdmt1 2 13509014 to 13544668 35654 - protein coding gene tRNA aspartic acid methyltransferase 1
Cpgi11214 2 13544420 to 13544795 375 CpG island CpG island 11214
Tssr22709 2 13544651 to 13544673 22 - TSS region transcription start site region 22709
Gm9875 2 13558323 to 13571736 13413 + lncRNA gene predicted gene 9875
Tssr22710 2 13558505 to 13558512 7 - TSS region transcription start site region 22710
D2Mit149.1 2 13571471 to 13571680 209 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 149.1
D2Mit149 2 13571654 to 13571852 198 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 149
Tssr22711 2 13572015 to 13572019 4 - TSS region transcription start site region 22711
Tssr22712 2 13573557 to 13573565 8 - TSS region transcription start site region 22712
Tssr16187 2 13573680 to 13573710 30 + TSS region transcription start site region 16187
Cpgi11215 2 13573898 to 13575329 1431 CpG island CpG island 11215
Tssr16188 2 13574006 to 13574028 22 + TSS region transcription start site region 16188
Tssr16189 2 13574032 to 13574075 43 + TSS region transcription start site region 16189
Tssr16190 2 13574094 to 13574114 20 + TSS region transcription start site region 16190
Tssr16191 2 13574299 to 13574318 19 + TSS region transcription start site region 16191
Vim 2 13574311 to 13582826 8515 + protein coding gene vimentin
Tssr22713 2 13574552 to 13574569 17 - TSS region transcription start site region 22713
Tssr22714 2 13574966 to 13575029 63 - TSS region transcription start site region 22714
Tssr16192 2 13575164 to 13575177 13 + TSS region transcription start site region 16192
Tssr16193 2 13575351 to 13575360 9 + TSS region transcription start site region 16193
Tssr16194 2 13575517 to 13575528 11 + TSS region transcription start site region 16194
Tssr16195 2 13575533 to 13575557 24 + TSS region transcription start site region 16195
Tssr16196 2 13575563 to 13575580 17 + TSS region transcription start site region 16196
Tssr16197 2 13578403 to 13578464 61 + TSS region transcription start site region 16197
Tssr16198 2 13578626 to 13578671 45 + TSS region transcription start site region 16198
Tssr16199 2 13578723 to 13578734 11 + TSS region transcription start site region 16199
Tssr16200 2 13578746 to 13578758 12 + TSS region transcription start site region 16200
Tssr16201 2 13578765 to 13578778 13 + TSS region transcription start site region 16201
Tssr16202 2 13578837 to 13578850 13 + TSS region transcription start site region 16202
Tssr16203 2 13578914 to 13578925 11 + TSS region transcription start site region 16203
Tssr16204 2 13579029 to 13579053 24 + TSS region transcription start site region 16204
Tssr16205 2 13579147 to 13579160 13 + TSS region transcription start site region 16205
Tssr16206 2 13579411 to 13579514 103 + TSS region transcription start site region 16206
Tssr16207 2 13579566 to 13579579 13 + TSS region transcription start site region 16207
Tssr16208 2 13580010 to 13580029 19 + TSS region transcription start site region 16208
Tssr16209 2 13580030 to 13580095 65 + TSS region transcription start site region 16209
Tssr22715 2 13580076 to 13580103 27 - TSS region transcription start site region 22715
Tssr16210 2 13580103 to 13580115 12 + TSS region transcription start site region 16210
Tssr16211 2 13580121 to 13580156 35 + TSS region transcription start site region 16211
Tssr16212 2 13580175 to 13580196 21 + TSS region transcription start site region 16212
Tssr22716 2 13580213 to 13580233 20 - TSS region transcription start site region 22716
Tssr16213 2 13580630 to 13580656 26 + TSS region transcription start site region 16213
Tssr16214 2 13580679 to 13580689 10 + TSS region transcription start site region 16214
Tssr16215 2 13580708 to 13580748 40 + TSS region transcription start site region 16215
Tssr16216 2 13581599 to 13581630 31 + TSS region transcription start site region 16216
Tssr16217 2 13581637 to 13581648 11 + TSS region transcription start site region 16217
Tssr22717 2 13581640 to 13581699 59 - TSS region transcription start site region 22717
Tssr16218 2 13582462 to 13582542 80 + TSS region transcription start site region 16218
Tssr22718 2 13582546 to 13582570 24 - TSS region transcription start site region 22718
Tssr16219 2 13582610 to 13582626 16 + TSS region transcription start site region 16219
Tssr16220 2 13582629 to 13582678 49 + TSS region transcription start site region 16220
Tssr22719 2 13582632 to 13582686 54 - TSS region transcription start site region 22719
Tssr16221 2 13582770 to 13582790 20 + TSS region transcription start site region 16221
St8sia6 2 13651021 to 13794064 143043 - protein coding gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6
Gm37126 2 13672516 to 13674434 1918 + antisense lncRNA gene predicted gene, 37126
Cpgi11216 2 13792760 to 13794163 1403 CpG island CpG island 11216
Tssr22720 2 13793031 to 13793036 5 - TSS region transcription start site region 22720
Tssr22721 2 13793728 to 13793753 25 - TSS region transcription start site region 22721
Tssr22722 2 13793793 to 13793806 13 - TSS region transcription start site region 22722
Tssr22723 2 13793817 to 13793879 62 - TSS region transcription start site region 22723
Tssr22724 2 13793911 to 13793920 9 - TSS region transcription start site region 22724
Tssr22725 2 13794013 to 13794025 12 - TSS region transcription start site region 22725
Tssr22726 2 13794032 to 13794041 9 - TSS region transcription start site region 22726
Tssr16222 2 13878952 to 13878958 6 + TSS region transcription start site region 16222
D930036K23Rik 2 14016086 to 14020049 3963 - unclassified gene RIKEN cDNA D930036K23 gene
5730447C08Rik 2 14020977 to 14021395 418 unclassified gene RIKEN cDNA 5730447C08 gene
D2Bwg0405e 2 14023789 to 14023952 163 DNA segment DNA segment, Chr 2, Brigham & Women's Genetics 0405 expressed
Hacd1 2 14026829 to 14056035 29206 - protein coding gene 3-hydroxyacyl-CoA dehydratase 1
Gm37894 2 14037825 to 14040423 2598 - unclassified gene predicted gene, 37894
Cpgi11217 2 14054913 to 14056485 1572 CpG island CpG island 11217
Tssr22727 2 14055890 to 14055917 27 - TSS region transcription start site region 22727
Tssr22728 2 14055929 to 14055956 27 - TSS region transcription start site region 22728
Tssr22729 2 14055963 to 14056022 59 - TSS region transcription start site region 22729
Tssr22730 2 14056029 to 14056044 15 - TSS region transcription start site region 22730
Tssr22731 2 14059899 to 14059915 16 - TSS region transcription start site region 22731
Stamos 2 14070333 to 14073934 3601 - lncRNA gene signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand
Cpgi11218 2 14073507 to 14074701 1194 CpG island CpG island 11218
Tssr16223 2 14073607 to 14073625 18 + TSS region transcription start site region 16223
Tssr16224 2 14073629 to 14073672 43 + TSS region transcription start site region 16224
Stam 2 14073654 to 14148338 74684 + protein coding gene signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
Tssr22732 2 14073851 to 14073867 16 - TSS region transcription start site region 22732
Tssr16225 2 14074091 to 14074146 55 + TSS region transcription start site region 16225
Tssr16226 2 14074147 to 14074191 44 + TSS region transcription start site region 16226
Tssr16227 2 14074218 to 14074235 17 + TSS region transcription start site region 16227
Tssr16228 2 14130842 to 14130853 11 + TSS region transcription start site region 16228
Gm37499 2 14149820 to 14153297 3477 + unclassified gene predicted gene, 37499
Tssr16229 2 14174492 to 14174509 17 + TSS region transcription start site region 16229
Tssr16230 2 14174513 to 14174546 33 + TSS region transcription start site region 16230
Tmem236 2 14174524 to 14221993 47469 + protein coding gene transmembrane protein 236
Tssr16231 2 14174550 to 14174564 14 + TSS region transcription start site region 16231
Gm13320 2 14189623 to 14189763 140 - pseudogene predicted gene 13320
Tssr16232 2 14201548 to 14201551 3 + TSS region transcription start site region 16232
Tssr16233 2 14229390 to 14229404 14 + TSS region transcription start site region 16233
Mrc1 2 14229414 to 14332023 102609 + protein coding gene mannose receptor, C type 1
Tssr16234 2 14247543 to 14247564 21 + TSS region transcription start site region 16234
Tssr16235 2 14258620 to 14258664 44 + TSS region transcription start site region 16235
Mir511 2 14261003 to 14261081 78 + miRNA gene microRNA 511
Tssr16236 2 14261176 to 14261226 50 + TSS region transcription start site region 16236
Tssr16237 2 14263308 to 14263321 13 + TSS region transcription start site region 16237
Tssr16238 2 14263394 to 14263409 15 + TSS region transcription start site region 16238
Tssr16239 2 14266497 to 14266509 12 + TSS region transcription start site region 16239
Tssr16240 2 14271698 to 14271709 11 + TSS region transcription start site region 16240
Tssr16241 2 14273462 to 14273466 4 + TSS region transcription start site region 16241
Tssr16242 2 14273504 to 14273533 29 + TSS region transcription start site region 16242
Tssr16243 2 14273583 to 14273588 5 + TSS region transcription start site region 16243
Tssr16244 2 14276278 to 14276288 10 + TSS region transcription start site region 16244
Tssr16245 2 14276296 to 14276317 21 + TSS region transcription start site region 16245
Tssr16246 2 14278921 to 14278926 5 + TSS region transcription start site region 16246
Tssr16247 2 14279576 to 14279585 9 + TSS region transcription start site region 16247
Tssr16248 2 14282142 to 14282190 48 + TSS region transcription start site region 16248
Tssr16249 2 14289084 to 14289104 20 + TSS region transcription start site region 16249
Tssr16250 2 14289149 to 14289160 11 + TSS region transcription start site region 16250
Tssr16251 2 14293503 to 14293514 11 + TSS region transcription start site region 16251
Tssr16252 2 14294813 to 14294826 13 + TSS region transcription start site region 16252
Tssr16253 2 14294862 to 14294880 18 + TSS region transcription start site region 16253
Tssr16254 2 14305333 to 14305354 21 + TSS region transcription start site region 16254
Tssr16255 2 14307036 to 14307039 3 + TSS region transcription start site region 16255
Tssr16256 2 14310899 to 14310905 6 + TSS region transcription start site region 16256
Tssr16257 2 14314280 to 14314300 20 + TSS region transcription start site region 16257
Tssr16258 2 14314428 to 14314449 21 + TSS region transcription start site region 16258
Tssr16259 2 14315348 to 14315361 13 + TSS region transcription start site region 16259
Tssr16260 2 14316180 to 14316193 13 + TSS region transcription start site region 16260
Tssr16261 2 14331063 to 14331081 18 + TSS region transcription start site region 16261
Tssr16262 2 14331109 to 14331131 22 + TSS region transcription start site region 16262
Tssr16263 2 14331135 to 14331196 61 + TSS region transcription start site region 16263
Tssr16264 2 14331371 to 14331382 11 + TSS region transcription start site region 16264
Tssr16265 2 14331429 to 14331451 22 + TSS region transcription start site region 16265
Tssr16266 2 14331456 to 14331480 24 + TSS region transcription start site region 16266
Tssr16267 2 14331496 to 14331518 22 + TSS region transcription start site region 16267
Tssr16268 2 14341887 to 14341894 7 + TSS region transcription start site region 16268
Gm37697 2 14345677 to 14347520 1843 + unclassified gene predicted gene, 37697
Slc39a12 2 14388316 to 14494977 106661 + protein coding gene solute carrier family 39 (zinc transporter), member 12
Tssr16269 2 14388390 to 14388420 30 + TSS region transcription start site region 16269
Tssr16270 2 14388434 to 14388451 17 + TSS region transcription start site region 16270
D2Ucl2 2 14428328 to 14428816 488 DNA segment DNA segment, Chr 2, University College London 2
C030041M11Rik 2 14483089 to 14483820 731 unclassified gene RIKEN cDNA C030041M11 gene
Gm13266 2 14512591 to 14542811 30220 + lncRNA gene predicted gene 13266
Tssr408 2 14512591 to 14512594 3 + TSS region transcription start site region 408
D2Mit317 2 14598379 to 14598623 244 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 317
Gm32741 2 14598741 to 14603664 4923 - lncRNA gene predicted gene, 32741
Cpgi11219 2 14603764 to 14605175 1411 CpG island CpG island 11219
Tssr16271 2 14603826 to 14603859 33 + TSS region transcription start site region 16271
Gm10849 2 14603990 to 14604611 621 - pseudogene predicted gene 10849
Cacnb2 2 14604053 to 14988811 384758 + protein coding gene calcium channel, voltage-dependent, beta 2 subunit
Tssr16272 2 14604200 to 14604203 3 + TSS region transcription start site region 16272
Tssr16273 2 14604212 to 14604241 29 + TSS region transcription start site region 16273
Tssr16274 2 14604252 to 14604271 19 + TSS region transcription start site region 16274
Gm38105 2 14611217 to 14613837 2620 + unclassified gene predicted gene, 38105
Gm13268 2 14626889 to 14627321 432 - pseudogene predicted gene 13268
Gm13312 2 14672255 to 14672972 717 + pseudogene predicted gene 13312
2900092N22Rik 2 14673404 to 14674812 1408 + unclassified gene RIKEN cDNA 2900092N22 gene
Gm13314 2 14691394 to 14691728 334 - pseudogene predicted gene 13314
Gm13311 2 14692871 to 14693249 378 - pseudogene predicted gene 13311
2900072G11Rik 2 14703152 to 14704716 1564 unclassified gene RIKEN cDNA 2900072G11 gene
Gm10848 2 14706834 to 14739722 32888 - antisense lncRNA gene predicted gene 10848
Gm37006 2 14707665 to 14710338 2673 + unclassified gene predicted gene, 37006
Gm13315 2 14721134 to 14722124 990 + pseudogene predicted gene 13315
Gm38273 2 14735546 to 14737927 2381 - unclassified gene predicted gene, 38273
Tssr16275 2 14739219 to 14739242 23 + TSS region transcription start site region 16275
Tssr16276 2 14739250 to 14739290 40 + TSS region transcription start site region 16276
Cpgi11220 2 14739552 to 14739843 291 CpG island CpG island 11220
Tssr22733 2 14739928 to 14739956 28 - TSS region transcription start site region 22733
Gm13269 2 14740372 to 14767024 26652 - antisense lncRNA gene predicted gene 13269
D2Mit360 2 14762038 to 14762124 86 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 360
Tssr16277 2 14763112 to 14763142 30 + TSS region transcription start site region 16277
Tssr16278 2 14763146 to 14763158 12 + TSS region transcription start site region 16278
Tssr16279 2 14763249 to 14763259 10 + TSS region transcription start site region 16279
Tssr16280 2 14763445 to 14763457 12 + TSS region transcription start site region 16280
Gm13316 2 14811848 to 14812538 690 - pseudogene predicted gene 13316
Tssr22734 2 14823907 to 14823927 20 - TSS region transcription start site region 22734
Tssr16281 2 14824014 to 14824027 13 + TSS region transcription start site region 16281
Tssr16282 2 14824044 to 14824047 3 + TSS region transcription start site region 16282
Tssr16283 2 14824062 to 14824072 10 + TSS region transcription start site region 16283
Tssr16284 2 14824077 to 14824088 11 + TSS region transcription start site region 16284
Tssr16285 2 14824095 to 14824119 24 + TSS region transcription start site region 16285
Tssr16286 2 14824125 to 14824136 11 + TSS region transcription start site region 16286
Tssr16287 2 14824172 to 14824185 13 + TSS region transcription start site region 16287
Tssr16288 2 14873698 to 14873708 10 + TSS region transcription start site region 16288
C030011G24Rik 2 14886695 to 14888134 1439 unclassified gene RIKEN cDNA C030011G24 gene
Tssr16289 2 14914242 to 14914251 9 + TSS region transcription start site region 16289
Gm37437 2 14944908 to 14946844 1936 + unclassified gene predicted gene, 37437
Tssr16290 2 14948107 to 14948116 9 + TSS region transcription start site region 16290
Tssr16291 2 14959757 to 14959761 4 + TSS region transcription start site region 16291
Gm37891 2 14966198 to 14967523 1325 + unclassified gene predicted gene, 37891
Tssr22735 2 14987537 to 14987543 6 - TSS region transcription start site region 22735
Nsun6 2 14995131 to 15055069 59938 - protein coding gene NOL1/NOP2/Sun domain family member 6
Gm36930 2 15031801 to 15034176 2375 - unclassified gene predicted gene, 36930
Tssr22736 2 15049116 to 15049126 10 - TSS region transcription start site region 22736
Cpgi11221 2 15049147 to 15049397 250 CpG island CpG island 11221
Tssr22737 2 15049159 to 15049170 11 - TSS region transcription start site region 22737
Tssr22738 2 15049176 to 15049198 22 - TSS region transcription start site region 22738
Tssr22739 2 15049254 to 15049339 85 - TSS region transcription start site region 22739
Tssr16292 2 15049429 to 15049447 18 + TSS region transcription start site region 16292
Cpgi11222 2 15054805 to 15055920 1115 CpG island CpG island 11222
Tssr409 2 15055035 to 15055049 14 - TSS region transcription start site region 409
Tssr22740 2 15055059 to 15055079 20 - TSS region transcription start site region 22740
Tssr16293 2 15055274 to 15055379 105 + TSS region transcription start site region 16293
Arl5b 2 15055362 to 15082456 27094 + protein coding gene ADP-ribosylation factor-like 5B
Tssr16294 2 15055382 to 15055402 20 + TSS region transcription start site region 16294
Gm38257 2 15056713 to 15059473 2760 + unclassified gene predicted gene, 38257