Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:13499032-14089041

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trdmt1 2 13509014 to 13544668 35654 - protein coding gene tRNA aspartic acid methyltransferase 1
Cpgi11214 2 13544420 to 13544795 375 CpG island CpG island 11214
Tssr22709 2 13544651 to 13544673 22 - TSS region transcription start site region 22709
Gm9875 2 13558323 to 13571736 13413 + lncRNA gene predicted gene 9875
Tssr22710 2 13558505 to 13558512 7 - TSS region transcription start site region 22710
D2Mit149.1 2 13571471 to 13571680 209 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 149.1
D2Mit149 2 13571654 to 13571852 198 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 149
Tssr22711 2 13572015 to 13572019 4 - TSS region transcription start site region 22711
Tssr22712 2 13573557 to 13573565 8 - TSS region transcription start site region 22712
Tssr16187 2 13573680 to 13573710 30 + TSS region transcription start site region 16187
Cpgi11215 2 13573898 to 13575329 1431 CpG island CpG island 11215
Tssr16188 2 13574006 to 13574028 22 + TSS region transcription start site region 16188
Tssr16189 2 13574032 to 13574075 43 + TSS region transcription start site region 16189
Tssr16190 2 13574094 to 13574114 20 + TSS region transcription start site region 16190
Tssr16191 2 13574299 to 13574318 19 + TSS region transcription start site region 16191
Vim 2 13574311 to 13582826 8515 + protein coding gene vimentin
Tssr22713 2 13574552 to 13574569 17 - TSS region transcription start site region 22713
Tssr22714 2 13574966 to 13575029 63 - TSS region transcription start site region 22714
Tssr16192 2 13575164 to 13575177 13 + TSS region transcription start site region 16192
Tssr16193 2 13575351 to 13575360 9 + TSS region transcription start site region 16193
Tssr16194 2 13575517 to 13575528 11 + TSS region transcription start site region 16194
Tssr16195 2 13575533 to 13575557 24 + TSS region transcription start site region 16195
Tssr16196 2 13575563 to 13575580 17 + TSS region transcription start site region 16196
Tssr16197 2 13578403 to 13578464 61 + TSS region transcription start site region 16197
Tssr16198 2 13578626 to 13578671 45 + TSS region transcription start site region 16198
Tssr16199 2 13578723 to 13578734 11 + TSS region transcription start site region 16199
Tssr16200 2 13578746 to 13578758 12 + TSS region transcription start site region 16200
Tssr16201 2 13578765 to 13578778 13 + TSS region transcription start site region 16201
Tssr16202 2 13578837 to 13578850 13 + TSS region transcription start site region 16202
Tssr16203 2 13578914 to 13578925 11 + TSS region transcription start site region 16203
Tssr16204 2 13579029 to 13579053 24 + TSS region transcription start site region 16204
Tssr16205 2 13579147 to 13579160 13 + TSS region transcription start site region 16205
Tssr16206 2 13579411 to 13579514 103 + TSS region transcription start site region 16206
Tssr16207 2 13579566 to 13579579 13 + TSS region transcription start site region 16207
Tssr16208 2 13580010 to 13580029 19 + TSS region transcription start site region 16208
Tssr16209 2 13580030 to 13580095 65 + TSS region transcription start site region 16209
Tssr22715 2 13580076 to 13580103 27 - TSS region transcription start site region 22715
Tssr16210 2 13580103 to 13580115 12 + TSS region transcription start site region 16210
Tssr16211 2 13580121 to 13580156 35 + TSS region transcription start site region 16211
Tssr16212 2 13580175 to 13580196 21 + TSS region transcription start site region 16212
Tssr22716 2 13580213 to 13580233 20 - TSS region transcription start site region 22716
Tssr16213 2 13580630 to 13580656 26 + TSS region transcription start site region 16213
Tssr16214 2 13580679 to 13580689 10 + TSS region transcription start site region 16214
Tssr16215 2 13580708 to 13580748 40 + TSS region transcription start site region 16215
Tssr16216 2 13581599 to 13581630 31 + TSS region transcription start site region 16216
Tssr16217 2 13581637 to 13581648 11 + TSS region transcription start site region 16217
Tssr22717 2 13581640 to 13581699 59 - TSS region transcription start site region 22717
Tssr16218 2 13582462 to 13582542 80 + TSS region transcription start site region 16218
Tssr22718 2 13582546 to 13582570 24 - TSS region transcription start site region 22718
Tssr16219 2 13582610 to 13582626 16 + TSS region transcription start site region 16219
Tssr16220 2 13582629 to 13582678 49 + TSS region transcription start site region 16220
Tssr22719 2 13582632 to 13582686 54 - TSS region transcription start site region 22719
Tssr16221 2 13582770 to 13582790 20 + TSS region transcription start site region 16221
St8sia6 2 13651021 to 13794064 143043 - protein coding gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6
Gm37126 2 13672516 to 13674434 1918 + antisense lncRNA gene predicted gene, 37126
Cpgi11216 2 13792760 to 13794163 1403 CpG island CpG island 11216
Tssr22720 2 13793031 to 13793036 5 - TSS region transcription start site region 22720
Tssr22721 2 13793728 to 13793753 25 - TSS region transcription start site region 22721
Tssr22722 2 13793793 to 13793806 13 - TSS region transcription start site region 22722
Tssr22723 2 13793817 to 13793879 62 - TSS region transcription start site region 22723
Tssr22724 2 13793911 to 13793920 9 - TSS region transcription start site region 22724
Tssr22725 2 13794013 to 13794025 12 - TSS region transcription start site region 22725
Tssr22726 2 13794032 to 13794041 9 - TSS region transcription start site region 22726
Tssr16222 2 13878952 to 13878958 6 + TSS region transcription start site region 16222
D930036K23Rik 2 14016086 to 14020049 3963 - unclassified gene RIKEN cDNA D930036K23 gene
5730447C08Rik 2 14020977 to 14021395 418 unclassified gene RIKEN cDNA 5730447C08 gene
D2Bwg0405e 2 14023789 to 14023952 163 DNA segment DNA segment, Chr 2, Brigham & Women's Genetics 0405 expressed
Hacd1 2 14026829 to 14056035 29206 - protein coding gene 3-hydroxyacyl-CoA dehydratase 1
Gm37894 2 14037825 to 14040423 2598 - unclassified gene predicted gene, 37894
Cpgi11217 2 14054913 to 14056485 1572 CpG island CpG island 11217
Tssr22727 2 14055890 to 14055917 27 - TSS region transcription start site region 22727
Tssr22728 2 14055929 to 14055956 27 - TSS region transcription start site region 22728
Tssr22729 2 14055963 to 14056022 59 - TSS region transcription start site region 22729
Tssr22730 2 14056029 to 14056044 15 - TSS region transcription start site region 22730
Tssr22731 2 14059899 to 14059915 16 - TSS region transcription start site region 22731
Stamos 2 14070333 to 14073934 3601 - lncRNA gene signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand
Cpgi11218 2 14073507 to 14074701 1194 CpG island CpG island 11218
Tssr16223 2 14073607 to 14073625 18 + TSS region transcription start site region 16223
Tssr16224 2 14073629 to 14073672 43 + TSS region transcription start site region 16224
Stam 2 14073654 to 14148338 74684 + protein coding gene signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
Tssr22732 2 14073851 to 14073867 16 - TSS region transcription start site region 22732
Tssr16225 2 14074091 to 14074146 55 + TSS region transcription start site region 16225
Tssr16226 2 14074147 to 14074191 44 + TSS region transcription start site region 16226
Tssr16227 2 14074218 to 14074235 17 + TSS region transcription start site region 16227