Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:134219540-137099591

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198 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbvq1 2 126200000 to 135600000 9400000 QTL trabecular bone volume QTL 1
Tssr26503 2 134488756 to 134488758 2 - TSS region transcription start site region 26503
Hao1 2 134497361 to 134554352 56991 - protein coding gene hydroxyacid oxidase 1, liver
D2Mit165 2 134527073 to 134527215 142 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 165
D2Mit448 2 134540056 to 134540162 106 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 448
D2Dcr78 2 134540059 to 134540151 92 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 78
Tssr164680 2 134546354 to 134546355 1 - TSS region transcription start site region 164680
Tssr26504 2 134554348 to 134554369 21 - TSS region transcription start site region 26504
Tmx4 2 134594501 to 134644121 49620 - protein coding gene thioredoxin-related transmembrane protein 4
Tssr26505 2 134596652 to 134596671 19 - TSS region transcription start site region 26505
Tssr26506 2 134634468 to 134634472 4 - TSS region transcription start site region 26506
Cpgi12319 2 134643555 to 134644360 805 CpG island CpG island 12319
Tssr26507 2 134644019 to 134644042 23 - TSS region transcription start site region 26507
Tssr26508 2 134644051 to 134644058 7 - TSS region transcription start site region 26508
Tssr26509 2 134644079 to 134644109 30 - TSS region transcription start site region 26509
Tssr26510 2 134644125 to 134644143 18 - TSS region transcription start site region 26510
Tssr26511 2 134644155 to 134644166 11 - TSS region transcription start site region 26511
Tssr26512 2 134644177 to 134644188 11 - TSS region transcription start site region 26512
Gm14037 2 134730795 to 134731107 312 - pseudogene predicted gene 14037
Gm14038 2 134762824 to 134763630 806 - pseudogene predicted gene 14038
Cpgi12320 2 134785898 to 134786877 979 CpG island CpG island 12320
Tssr20351 2 134786154 to 134786170 16 + TSS region transcription start site region 20351
Plcb1 2 134786164 to 135475258 689094 + protein coding gene phospholipase C, beta 1
Tssr20352 2 134786175 to 134786196 21 + TSS region transcription start site region 20352
Tssr20353 2 134786198 to 134786218 20 + TSS region transcription start site region 20353
Gm14036 2 134803949 to 134804428 479 + pseudogene predicted gene 14036
Tssr20354 2 134845529 to 134845540 11 + TSS region transcription start site region 20354
Tssr664 2 134845567 to 134845574 7 + TSS region transcription start site region 664
Tssr20355 2 134855284 to 134855304 20 + TSS region transcription start site region 20355
Tssr20356 2 134862963 to 134862965 2 + TSS region transcription start site region 20356
Gm39941 2 134925794 to 134932369 6575 + lncRNA gene predicted gene, 39941
D2Dcr79 2 134949670 to 134949788 118 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 79
D2Mit223 2 134987411 to 134987508 97 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 223
Tssr20357 2 134991567 to 134991570 3 + TSS region transcription start site region 20357
Tssr20358 2 134992012 to 134992040 28 + TSS region transcription start site region 20358
D2Mit191 2 135005372 to 135005478 106 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 191
Tssr20359 2 135022249 to 135022254 5 + TSS region transcription start site region 20359
Tssr20360 2 135061320 to 135061335 15 + TSS region transcription start site region 20360
Tssr20361 2 135146731 to 135146735 4 + TSS region transcription start site region 20361
4930545L23Rik 2 135169573 to 135215616 46043 - antisense lncRNA gene RIKEN cDNA 4930545L23 gene
Tssr20362 2 135193444 to 135193447 3 + TSS region transcription start site region 20362
Tssr26513 2 135215610 to 135215622 12 - TSS region transcription start site region 26513
Tssr20363 2 135262423 to 135262427 4 + TSS region transcription start site region 20363
D2Mit208 2 135280668 to 135280855 187 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 208
D2Dcr80 2 135280685 to 135280788 103 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 80
Tssr665 2 135309184 to 135309187 3 + TSS region transcription start site region 665
Tssr20364 2 135312392 to 135312394 2 + TSS region transcription start site region 20364
Tssr20365 2 135336375 to 135336379 4 + TSS region transcription start site region 20365
Tssr20366 2 135364771 to 135364784 13 + TSS region transcription start site region 20366
D2Mit400 2 135413882 to 135413981 99 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 400
Tssr20367 2 135473793 to 135473802 9 + TSS region transcription start site region 20367
Gm31993 2 135541387 to 135550209 8822 + lncRNA gene predicted gene, 31993
9630028H03Rik 2 135580530 to 135583220 2690 - antisense lncRNA gene RIKEN cDNA 9630028H03 gene
Tssr26514 2 135583289 to 135583314 25 - TSS region transcription start site region 26514
Rvfs1 2 135590624 to 173607823 38017199 QTL Rift Valley fever susceptibility 1
D2Mit306 2 135590624 to 135590730 106 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 306
Tssr20368 2 135646517 to 135646529 12 + TSS region transcription start site region 20368
Platr3 2 135648907 to 135652063 3156 + lincRNA gene pluripotency associated transcript 3
Cpgi12321 2 135658505 to 135660122 1617 CpG island CpG island 12321
Plcb4 2 135659011 to 136014593 355582 + protein coding gene phospholipase C, beta 4
Tssr20369 2 135659159 to 135659174 15 + TSS region transcription start site region 20369
Tssr20370 2 135659293 to 135659357 64 + TSS region transcription start site region 20370
Tssr20371 2 135659540 to 135659591 51 + TSS region transcription start site region 20371
Tssr20372 2 135659593 to 135659604 11 + TSS region transcription start site region 20372
Tssr20373 2 135659625 to 135659650 25 + TSS region transcription start site region 20373
Tssr20374 2 135659685 to 135659713 28 + TSS region transcription start site region 20374
Gm14209 2 135669453 to 135670425 972 + sense intronic lncRNA gene predicted gene 14209
Tssr20375 2 135674247 to 135674275 28 + TSS region transcription start site region 20375
Gm14211 2 135686174 to 135693154 6980 - lincRNA gene predicted gene 14211
Tssr20376 2 135764880 to 135764908 28 + TSS region transcription start site region 20376
Tssr20377 2 135764910 to 135764935 25 + TSS region transcription start site region 20377
Tssr20378 2 135764958 to 135764973 15 + TSS region transcription start site region 20378
Gm14210 2 135811945 to 135812927 982 - lincRNA gene predicted gene 14210
Tssr20379 2 135929503 to 135929512 9 + TSS region transcription start site region 20379
Tssr20380 2 135987604 to 135987606 2 + TSS region transcription start site region 20380
Tssr20381 2 136007342 to 136007356 14 + TSS region transcription start site region 20381
Tssr666 2 136012008 to 136012014 6 + TSS region transcription start site region 666
Gm26227 2 136026151 to 136026251 100 - snRNA gene predicted gene, 26227
Tssr20382 2 136052180 to 136052199 19 + TSS region transcription start site region 20382
Lamp5 2 136052239 to 136069917 17678 + protein coding gene lysosomal-associated membrane protein family, member 5
Tssr20383 2 136057711 to 136057723 12 + TSS region transcription start site region 20383
Tssr20384 2 136057886 to 136057895 9 + TSS region transcription start site region 20384
Tssr20385 2 136057955 to 136057981 26 + TSS region transcription start site region 20385
Tssr20386 2 136058080 to 136058102 22 + TSS region transcription start site region 20386
Cpgi12322 2 136058095 to 136058388 293 CpG island CpG island 12322
Tssr667 2 136058104 to 136058107 3 + TSS region transcription start site region 667
Tssr20387 2 136058138 to 136058149 11 + TSS region transcription start site region 20387
Tssr20388 2 136058167 to 136058176 9 + TSS region transcription start site region 20388
Tssr20389 2 136058207 to 136058212 5 + TSS region transcription start site region 20389
Tssr20390 2 136058224 to 136058237 13 + TSS region transcription start site region 20390
Tssr20391 2 136058245 to 136058263 18 + TSS region transcription start site region 20391
Tssr20392 2 136058270 to 136058293 23 + TSS region transcription start site region 20392
Cpgi12323 2 136059254 to 136059681 427 CpG island CpG island 12323
Tssr20393 2 136059775 to 136059804 29 + TSS region transcription start site region 20393
Tssr20394 2 136060784 to 136060796 12 + TSS region transcription start site region 20394
Pak7 2 136081104 to 136387967 306863 - protein coding gene p21 (RAC1) activated kinase 7
2900018K06Rik 2 136120254 to 136120720 466 unclassified gene RIKEN cDNA 2900018K06 gene
Gm14218 2 136137006 to 136140161 3155 + antisense lncRNA gene predicted gene 14218
Gm39942 2 136179602 to 136183686 4084 + lncRNA gene predicted gene, 39942
D2Mit136 2 136353842 to 136353991 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 136
Cpgi12324 2 136387214 to 136387779 565 CpG island CpG island 12324
Tssr26515 2 136387691 to 136387698 7 - TSS region transcription start site region 26515
Tssr26516 2 136387740 to 136387798 58 - TSS region transcription start site region 26516
Tssr26517 2 136387804 to 136387820 16 - TSS region transcription start site region 26517
Tssr26518 2 136387929 to 136387985 56 - TSS region transcription start site region 26518
Tssr26519 2 136387994 to 136388005 11 - TSS region transcription start site region 26519
Gm14056 2 136399062 to 136399703 641 + pseudogene predicted gene 14056
Gm14054 2 136402719 to 136403422 703 - pseudogene predicted gene 14054
Gm32546 2 136445260 to 136486403 41143 - lncRNA gene predicted gene, 32546
Tssr20395 2 136501904 to 136501917 13 + TSS region transcription start site region 20395
Tssr20396 2 136501951 to 136501959 8 + TSS region transcription start site region 20396
Tssr20397 2 136501966 to 136501977 11 + TSS region transcription start site region 20397
Tssr20398 2 136501978 to 136501997 19 + TSS region transcription start site region 20398
Tssr668 2 136502036 to 136502039 3 + TSS region transcription start site region 668
Tssr20399 2 136502046 to 136502047 1 + TSS region transcription start site region 20399
Tssr20400 2 136502050 to 136502061 11 + TSS region transcription start site region 20400
Tssr20401 2 136502243 to 136502260 17 + TSS region transcription start site region 20401
Gm32746 2 136508158 to 136512187 4029 - lncRNA gene predicted gene, 32746
Tssr26520 2 136512015 to 136512062 47 - TSS region transcription start site region 26520
Cpgi12325 2 136532036 to 136532433 397 CpG island CpG island 12325
Tssr20402 2 136532180 to 136532215 35 + TSS region transcription start site region 20402
Tssr20403 2 136532243 to 136532259 16 + TSS region transcription start site region 20403
Tssr20404 2 136532266 to 136532287 21 + TSS region transcription start site region 20404
Ankef1 2 136532321 to 136555854 23533 + protein coding gene ankyrin repeat and EF-hand domain containing 1
Gm32659 2 136533833 to 136714163 180330 - lncRNA gene predicted gene, 32659
Cpgi12326 2 136549764 to 136550049 285 CpG island CpG island 12326
Tssr669 2 136552912 to 136552920 8 + TSS region transcription start site region 669
Cpgi12327 2 136678590 to 136679118 528 CpG island CpG island 12327
Gm36967 2 136679961 to 136680226 265 + unclassified gene predicted gene, 36967
Cpgi12328 2 136712002 to 136712385 383 CpG island CpG island 12328
Tssr20405 2 136713295 to 136713313 18 + TSS region transcription start site region 20405
Tssr20406 2 136713444 to 136713492 48 + TSS region transcription start site region 20406
Snap25 2 136713453 to 136782428 68975 + protein coding gene synaptosomal-associated protein 25
Tssr20407 2 136713507 to 136713528 21 + TSS region transcription start site region 20407
Tssr20408 2 136713540 to 136713556 16 + TSS region transcription start site region 20408
Cpgi12329 2 136714075 to 136714433 358 CpG island CpG island 12329
Tssr20409 2 136723774 to 136723778 4 + TSS region transcription start site region 20409
Gm14053 2 136744146 to 136744615 469 - pseudogene predicted gene 14053
Tssr20410 2 136756071 to 136756142 71 + TSS region transcription start site region 20410
Tssr20411 2 136758304 to 136758330 26 + TSS region transcription start site region 20411
Tssr20412 2 136764036 to 136764055 19 + TSS region transcription start site region 20412
Tssr20413 2 136765389 to 136765402 13 + TSS region transcription start site region 20413
Tssr20414 2 136770127 to 136770142 15 + TSS region transcription start site region 20414
Tssr20415 2 136770146 to 136770152 6 + TSS region transcription start site region 20415
Tssr20416 2 136772979 to 136772982 3 + TSS region transcription start site region 20416
Tssr20417 2 136773924 to 136773961 37 + TSS region transcription start site region 20417
Tssr20418 2 136773973 to 136773999 26 + TSS region transcription start site region 20418
Tssr20419 2 136777330 to 136777341 11 + TSS region transcription start site region 20419
Tssr20420 2 136777377 to 136777448 71 + TSS region transcription start site region 20420
Tssr20421 2 136781071 to 136781081 10 + TSS region transcription start site region 20421
Tssr20422 2 136781127 to 136781164 37 + TSS region transcription start site region 20422
Tssr20423 2 136781172 to 136781224 52 + TSS region transcription start site region 20423
Tssr26521 2 136781228 to 136781274 46 - TSS region transcription start site region 26521
Tssr20424 2 136781286 to 136781293 7 + TSS region transcription start site region 20424
Tssr20425 2 136781361 to 136781370 9 + TSS region transcription start site region 20425
Tssr20426 2 136781398 to 136781420 22 + TSS region transcription start site region 20426
Tssr20427 2 136781457 to 136781472 15 + TSS region transcription start site region 20427
Tssr20428 2 136781589 to 136781607 18 + TSS region transcription start site region 20428
Tssr20429 2 136781761 to 136781770 9 + TSS region transcription start site region 20429
Tssr20430 2 136781822 to 136781827 5 + TSS region transcription start site region 20430
Tssr20431 2 136781837 to 136781842 5 + TSS region transcription start site region 20431
Tssr20432 2 136781881 to 136781888 7 + TSS region transcription start site region 20432
Tssr20433 2 136781935 to 136781942 7 + TSS region transcription start site region 20433
Gm39943 2 136793417 to 136805072 11655 - lncRNA gene predicted gene, 39943
Gm46767 2 136805208 to 136828496 23288 - lncRNA gene predicted gene, 46767
Tssr20434 2 136809344 to 136809350 6 + TSS region transcription start site region 20434
Mkks 2 136873780 to 136891389 17609 - protein coding gene McKusick-Kaufman syndrome
Cpgi12330 2 136890863 to 136891685 822 CpG island CpG island 12330
Tssr26522 2 136891115 to 136891122 7 - TSS region transcription start site region 26522
Tssr26523 2 136891131 to 136891186 55 - TSS region transcription start site region 26523
Slx4ip 2 136891218 to 137071950 180732 + protein coding gene SLX4 interacting protein
Tssr26524 2 136891363 to 136891413 50 - TSS region transcription start site region 26524
Tssr20435 2 136891563 to 136891599 36 + TSS region transcription start site region 20435
Tssr20436 2 136891601 to 136891615 14 + TSS region transcription start site region 20436
Cpgi12331 2 136892026 to 136892438 412 CpG island CpG island 12331
Tssr20437 2 136892208 to 136892241 33 + TSS region transcription start site region 20437
Tssr20438 2 136892249 to 136892272 23 + TSS region transcription start site region 20438
Tssr20439 2 136892280 to 136892294 14 + TSS region transcription start site region 20439
Tssr20440 2 136910151 to 136910171 20 + TSS region transcription start site region 20440
Tssr20441 2 136910177 to 136910188 11 + TSS region transcription start site region 20441
Tssr20442 2 136910625 to 136910638 13 + TSS region transcription start site region 20442
Tssr20443 2 136911009 to 136911029 20 + TSS region transcription start site region 20443
Tssr20444 2 136911231 to 136911243 12 + TSS region transcription start site region 20444
Tssr20445 2 136911392 to 136911403 11 + TSS region transcription start site region 20445
Tssr20446 2 136915361 to 136915381 20 + TSS region transcription start site region 20446
Tssr20447 2 136922291 to 136922298 7 + TSS region transcription start site region 20447
Tssr20448 2 136935027 to 136935030 3 + TSS region transcription start site region 20448
Tssr20449 2 136944043 to 136944047 4 + TSS region transcription start site region 20449
Gm38479 2 136944077 to 136947476 3399 + lncRNA gene predicted gene, 38479
D2Dcr81 2 136961903 to 136962017 114 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 81
Vclq1 2 137000000 to 62000000 -75000000 QTL curvilinear velocity QTL 1
Tssr20450 2 137028101 to 137028112 11 + TSS region transcription start site region 20450
Jag1 2 137081451 to 137116520 35069 - protein coding gene jagged 1
Tssr26525 2 137082008 to 137082022 14 - TSS region transcription start site region 26525
Tssr26526 2 137082148 to 137082153 5 - TSS region transcription start site region 26526
Tssr26527 2 137093450 to 137093461 11 - TSS region transcription start site region 26527
Tssr26528 2 137095568 to 137095572 4 - TSS region transcription start site region 26528
Tssr670 2 137095738 to 137095776 38 - TSS region transcription start site region 670