Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:131542676-132662691

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180 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm39938 2 131537662 to 131561060 23398 + lncRNA gene predicted gene, 39938
Cpgi12294 2 131545781 to 131546759 978 CpG island CpG island 12294
Adra1d 2 131545850 to 131562283 16433 - protein coding gene adrenergic receptor, alpha 1d
Cpgi12295 2 131561032 to 131563141 2109 CpG island CpG island 12295
Tssr20277 2 131561605 to 131561619 14 + TSS region transcription start site region 20277
Gm14285 2 131561614 to 131563179 1565 + antisense lncRNA gene predicted gene 14285
Tssr20278 2 131561638 to 131561651 13 + TSS region transcription start site region 20278
Tssr26401 2 131562488 to 131562502 14 - TSS region transcription start site region 26401
Tssr26402 2 131562515 to 131562535 20 - TSS region transcription start site region 26402
Tssr26403 2 131562755 to 131562773 18 - TSS region transcription start site region 26403
D2Mit77 2 131602630 to 131602799 169 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 77
Gm14280 2 131652897 to 131721838 68941 - antisense lncRNA gene predicted gene 14280
D2Dcr74 2 131684204 to 131684312 108 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 74
D2Mit525 2 131684211 to 131684329 118 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 525
Gm30986 2 131740342 to 131749227 8885 + lncRNA gene predicted gene, 30986
Tssr657 2 131807222 to 131807223 1 + TSS region transcription start site region 657
5330413P13Rik 2 131820006 to 131847656 27650 - lincRNA gene RIKEN cDNA 5330413P13 gene
Tssr20279 2 131843122 to 131843138 16 + TSS region transcription start site region 20279
Gm14282 2 131845356 to 131845595 239 - pseudogene predicted gene 14282
Gm14281 2 131846405 to 131847674 1269 + pseudogene predicted gene 14281
Tssr26404 2 131847607 to 131847678 71 - TSS region transcription start site region 26404
Erv3 2 131853678 to 131859747 6069 - protein coding gene endogenous retroviral sequence 3
Tssr26405 2 131853703 to 131853753 50 - TSS region transcription start site region 26405
Tssr26406 2 131854456 to 131854467 11 - TSS region transcription start site region 26406
Tssr26407 2 131855028 to 131855067 39 - TSS region transcription start site region 26407
Tssr26408 2 131855134 to 131855155 21 - TSS region transcription start site region 26408
Tssr658 2 131855246 to 131855273 27 - TSS region transcription start site region 658
Tssr20280 2 131855368 to 131855378 10 + TSS region transcription start site region 20280
Tssr26409 2 131855389 to 131855398 9 - TSS region transcription start site region 26409
Tssr659 2 131855398 to 131855407 9 - TSS region transcription start site region 659
Tssr26410 2 131855413 to 131855440 27 - TSS region transcription start site region 26410
Tssr26411 2 131855452 to 131855490 38 - TSS region transcription start site region 26411
Tssr26412 2 131855531 to 131855544 13 - TSS region transcription start site region 26412
Tssr26413 2 131855621 to 131855630 9 - TSS region transcription start site region 26413
Tssr660 2 131855644 to 131855645 1 - TSS region transcription start site region 660
Tssr26414 2 131855807 to 131855818 11 - TSS region transcription start site region 26414
Tssr26415 2 131855829 to 131855840 11 - TSS region transcription start site region 26415
Tssr20281 2 131856543 to 131856553 10 + TSS region transcription start site region 20281
Tssr26416 2 131859739 to 131859755 16 - TSS region transcription start site region 26416
Tssr26417 2 131859826 to 131859827 1 - TSS region transcription start site region 26417
Lamr1-ps1 2 131904086 to 131904959 873 + pseudogene laminin receptor 1 (ribosomal protein SA), pseudogene 1
Tssr26418 2 131909775 to 131909781 6 - TSS region transcription start site region 26418
Cpgi12296 2 131909781 to 131910407 626 CpG island CpG island 12296
Prnp 2 131909928 to 131938429 28501 + protein coding gene prion protein
Tssr20282 2 131909931 to 131909948 17 + TSS region transcription start site region 20282
Tssr20283 2 131909951 to 131909979 28 + TSS region transcription start site region 20283
Prn 2 131909957 to 131956130 46173 + protein coding gene prion protein readthrough transcript
Tssr26419 2 131910698 to 131910701 3 - TSS region transcription start site region 26419
Tssr20284 2 131936698 to 131936714 16 + TSS region transcription start site region 20284
Tssr20285 2 131936792 to 131936804 12 + TSS region transcription start site region 20285
Tssr661 2 131936814 to 131936826 12 + TSS region transcription start site region 661
Tssr20286 2 131937005 to 131937018 13 + TSS region transcription start site region 20286
Tssr20287 2 131937127 to 131937146 19 + TSS region transcription start site region 20287
Tssr20288 2 131937458 to 131937476 18 + TSS region transcription start site region 20288
Tssr20289 2 131950855 to 131950867 12 + TSS region transcription start site region 20289
Prnd 2 131950861 to 131956130 5269 + protein coding gene prion like protein doppel
Tssr20290 2 131951011 to 131951028 17 + TSS region transcription start site region 20290
Cpgi12297 2 131953092 to 131953549 457 CpG island CpG island 12297
Tssr26420 2 131954993 to 131955008 15 - TSS region transcription start site region 26420
Cpgi12298 2 131955343 to 131955565 222 CpG island CpG island 12298
Mdq14 2 131981644 to 131981644 0 QTL mammary ductal QTL 14
Tssr26421 2 131991649 to 131991695 46 - TSS region transcription start site region 26421
Rassf2 2 131992850 to 132030319 37469 - protein coding gene Ras association (RalGDS/AF-6) domain family member 2
Tssr26422 2 131993055 to 131993060 5 - TSS region transcription start site region 26422
Tssr26423 2 131993589 to 131993601 12 - TSS region transcription start site region 26423
Tssr26424 2 131994184 to 131994207 23 - TSS region transcription start site region 26424
Tssr26425 2 131994315 to 131994336 21 - TSS region transcription start site region 26425
Tssr26426 2 131994614 to 131994640 26 - TSS region transcription start site region 26426
Tssr26427 2 132002678 to 132002684 6 - TSS region transcription start site region 26427
Tssr662 2 132006782 to 132006811 29 + TSS region transcription start site region 662
Tssr26428 2 132007456 to 132007478 22 - TSS region transcription start site region 26428
Tssr26429 2 132019414 to 132019456 42 - TSS region transcription start site region 26429
Tssr26430 2 132019468 to 132019476 8 - TSS region transcription start site region 26430
Tssr26431 2 132020731 to 132020779 48 - TSS region transcription start site region 26431
Tssr26432 2 132021109 to 132021120 11 - TSS region transcription start site region 26432
Tssr26433 2 132021135 to 132021178 43 - TSS region transcription start site region 26433
Tssr26434 2 132021193 to 132021204 11 - TSS region transcription start site region 26434
Tssr26435 2 132021228 to 132021238 10 - TSS region transcription start site region 26435
Gm39939 2 132021258 to 132025798 4540 + lncRNA gene predicted gene, 39939
Tssr20291 2 132021284 to 132021297 13 + TSS region transcription start site region 20291
Tssr20292 2 132027660 to 132027684 24 + TSS region transcription start site region 20292
Tssr20293 2 132028344 to 132028354 10 + TSS region transcription start site region 20293
Cpgi12299 2 132029063 to 132030522 1459 CpG island CpG island 12299
Tssr26436 2 132029161 to 132029184 23 - TSS region transcription start site region 26436
Tssr26437 2 132029188 to 132029205 17 - TSS region transcription start site region 26437
Tssr26438 2 132029788 to 132029804 16 - TSS region transcription start site region 26438
Tssr26439 2 132029808 to 132029813 5 - TSS region transcription start site region 26439
Tssr26440 2 132029815 to 132029822 7 - TSS region transcription start site region 26440
Tssr26441 2 132029824 to 132029844 20 - TSS region transcription start site region 26441
Tssr26442 2 132029845 to 132029901 56 - TSS region transcription start site region 26442
Tssr20294 2 132029980 to 132029986 6 + TSS region transcription start site region 20294
Gm31179 2 132030405 to 132040385 9980 + lncRNA gene predicted gene, 31179
Slc23a2 2 132052496 to 132145108 92612 - protein coding gene solute carrier family 23 (nucleobase transporters), member 2
Tssr26443 2 132053289 to 132053302 13 - TSS region transcription start site region 26443
Tssr26444 2 132055927 to 132055944 17 - TSS region transcription start site region 26444
Tssr26445 2 132060780 to 132060792 12 - TSS region transcription start site region 26445
Tssr26446 2 132094175 to 132094204 29 - TSS region transcription start site region 26446
Tssr26447 2 132094587 to 132094608 21 - TSS region transcription start site region 26447
Tssr20295 2 132094718 to 132094744 26 + TSS region transcription start site region 20295
Gm14052 2 132099860 to 132100812 952 + pseudogene predicted gene 14052
Tssr26448 2 132102676 to 132102691 15 - TSS region transcription start site region 26448
Tssr26449 2 132103418 to 132103446 28 - TSS region transcription start site region 26449
Tssr26450 2 132103454 to 132103465 11 - TSS region transcription start site region 26450
Tssr26451 2 132111440 to 132111465 25 - TSS region transcription start site region 26451
Tssr26452 2 132111467 to 132111478 11 - TSS region transcription start site region 26452
Tssr26453 2 132111497 to 132111508 11 - TSS region transcription start site region 26453
Tssr26454 2 132112338 to 132112354 16 - TSS region transcription start site region 26454
Tssr26455 2 132114597 to 132114611 14 - TSS region transcription start site region 26455
Tssr26456 2 132118517 to 132118525 8 - TSS region transcription start site region 26456
Tssr26457 2 132118764 to 132118775 11 - TSS region transcription start site region 26457
Tssr26458 2 132120137 to 132120154 17 - TSS region transcription start site region 26458
Tssr26459 2 132127422 to 132127426 4 - TSS region transcription start site region 26459
Tssr26460 2 132128698 to 132128704 6 - TSS region transcription start site region 26460
Cpgi12300 2 132144303 to 132145548 1245 CpG island CpG island 12300
Gm14051 2 132144533 to 132220250 75717 + antisense lncRNA gene predicted gene 14051
Tssr26461 2 132145057 to 132145118 61 - TSS region transcription start site region 26461
Tssr26462 2 132145339 to 132145368 29 - TSS region transcription start site region 26462
Tssr26463 2 132146253 to 132146255 2 - TSS region transcription start site region 26463
Tssr20296 2 132151937 to 132151951 14 + TSS region transcription start site region 20296
Tssr20297 2 132212581 to 132212628 47 + TSS region transcription start site region 20297
Gm29720 2 132214953 to 132215329 376 - protein coding gene predicted gene, 29720
Tmem230 2 132239492 to 132247807 8315 - protein coding gene transmembrane protein 230
Cpgi12301 2 132247275 to 132248251 976 CpG island CpG island 12301
Tssr26464 2 132247623 to 132247644 21 - TSS region transcription start site region 26464
Tssr26465 2 132247667 to 132247698 31 - TSS region transcription start site region 26465
Tssr26466 2 132247747 to 132247787 40 - TSS region transcription start site region 26466
Tssr20298 2 132247843 to 132247863 20 + TSS region transcription start site region 20298
Pcna 2 132249286 to 132253180 3894 - protein coding gene proliferating cell nuclear antigen
Cpgi12302 2 132252505 to 132253560 1055 CpG island CpG island 12302
Tssr20299 2 132252785 to 132252819 34 + TSS region transcription start site region 20299
Tssr26467 2 132253077 to 132253103 26 - TSS region transcription start site region 26467
Tssr26468 2 132253174 to 132253217 43 - TSS region transcription start site region 26468
Tssr26469 2 132253227 to 132253236 9 - TSS region transcription start site region 26469
AV099323 2 132253246 to 132260927 7681 + antisense lncRNA gene expressed sequence AV099323
Tssr20300 2 132253349 to 132253388 39 + TSS region transcription start site region 20300
Tssr20301 2 132253391 to 132253435 44 + TSS region transcription start site region 20301
Cpgi12303 2 132262797 to 132263959 1162 CpG island CpG island 12303
Tssr20302 2 132263136 to 132263268 132 + TSS region transcription start site region 20302
Cds2 2 132263148 to 132312050 48902 + protein coding gene CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2
Tssr20303 2 132263273 to 132263318 45 + TSS region transcription start site region 20303
Tssr20304 2 132263322 to 132263334 12 + TSS region transcription start site region 20304
Tssr20305 2 132263436 to 132263445 9 + TSS region transcription start site region 20305
Gm46766 2 132263504 to 132267647 4143 + lncRNA gene predicted gene, 46766
Cpgi12304 2 132264100 to 132264332 232 CpG island CpG island 12304
Tssr26470 2 132264213 to 132264224 11 - TSS region transcription start site region 26470
Tssr20306 2 132281154 to 132281197 43 + TSS region transcription start site region 20306
Tssr20307 2 132289398 to 132289410 12 + TSS region transcription start site region 20307
Prokr2 2 132369705 to 132385501 15796 - protein coding gene prokineticin receptor 2
D2Mit257 2 132370937 to 132371074 137 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 257
Ltpr2g 2 132370937 to 132371074 137 QTL Leishmania tropica response 2g
Ltpr2f 2 132370937 to 132371074 137 QTL Leishmania tropica response 2f
D2Dcr75 2 132370945 to 132371047 102 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 75
Cpgi12305 2 132373455 to 132374011 556 CpG island CpG island 12305
Cpgi12306 2 132384617 to 132385488 871 CpG island CpG island 12306
Tssr26471 2 132385392 to 132385434 42 - TSS region transcription start site region 26471
Tssr26472 2 132385435 to 132385448 13 - TSS region transcription start site region 26472
4921508D12Rik 2 132424741 to 132452499 27758 + lincRNA gene RIKEN cDNA 4921508D12 gene
Tssr26473 2 132455292 to 132455302 10 - TSS region transcription start site region 26473
Gm14095 2 132482516 to 132486590 4074 - lincRNA gene predicted gene 14095
1700058J15Rik 2 132489671 to 132490622 951 unclassified gene RIKEN cDNA 1700058J15 gene
Tssr20308 2 132490697 to 132490707 10 + TSS region transcription start site region 20308
Tssr20309 2 132490711 to 132490736 25 + TSS region transcription start site region 20309
1700026D11Rik 2 132490728 to 132524057 33329 + antisense lncRNA gene RIKEN cDNA 1700026D11 gene
Tssr26474 2 132512489 to 132512509 20 - TSS region transcription start site region 26474
Tssr26475 2 132513902 to 132513919 17 - TSS region transcription start site region 26475
Gpcpd1 2 132529082 to 132578258 49176 - protein coding gene glycerophosphocholine phosphodiesterase 1
E030016H06Rik 2 132559005 to 132561681 2676 unclassified gene RIKEN cDNA E030016H06 gene
Tssr26476 2 132574143 to 132574147 4 - TSS region transcription start site region 26476
Tssr20310 2 132576054 to 132576069 15 + TSS region transcription start site region 20310
Cpgi12307 2 132577460 to 132578526 1066 CpG island CpG island 12307
Tssr20311 2 132578022 to 132578034 12 + TSS region transcription start site region 20311
Tssr26477 2 132578128 to 132578153 25 - TSS region transcription start site region 26477
Tssr26478 2 132578155 to 132578222 67 - TSS region transcription start site region 26478
Tssr26479 2 132578244 to 132578255 11 - TSS region transcription start site region 26479
Tssr20312 2 132597448 to 132597461 13 + TSS region transcription start site region 20312
AU019990 2 132598196 to 132653067 54871 + lincRNA gene expressed sequence AU019990
Tssr20313 2 132599442 to 132599462 20 + TSS region transcription start site region 20313
Tssr663 2 132599504 to 132599525 21 + TSS region transcription start site region 663
Tssr26480 2 132601168 to 132601171 3 - TSS region transcription start site region 26480
Rpl23a-ps4 2 132662242 to 132662696 454 + pseudogene ribosomal protein L23A, pseudogene 4