Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:131470342-132019227

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D2Mit307 2 131471753 to 131471901 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 307
Gm30679 2 131481838 to 131491749 9911 - lncRNA gene predicted gene, 30679
Cpgi12292 2 131491499 to 131492859 1360 CpG island CpG island 12292
Tssr26400 2 131491684 to 131491714 30 - TSS region transcription start site region 26400
Tssr20265 2 131491751 to 131491760 9 + TSS region transcription start site region 20265
Smox 2 131491784 to 131525183 33399 + protein coding gene spermine oxidase
Tssr20266 2 131491883 to 131491940 57 + TSS region transcription start site region 20266
Tssr20267 2 131491958 to 131491969 11 + TSS region transcription start site region 20267
Tssr20268 2 131495670 to 131495675 5 + TSS region transcription start site region 20268
Tssr20269 2 131498628 to 131498635 7 + TSS region transcription start site region 20269
Tssr20270 2 131499265 to 131499269 4 + TSS region transcription start site region 20270
Tssr20271 2 131505658 to 131505661 3 + TSS region transcription start site region 20271
Tssr20272 2 131506601 to 131506609 8 + TSS region transcription start site region 20272
Tssr20273 2 131508967 to 131508979 12 + TSS region transcription start site region 20273
Tssr20274 2 131514531 to 131514551 20 + TSS region transcription start site region 20274
Tssr20275 2 131514860 to 131514865 5 + TSS region transcription start site region 20275
Cpgi12293 2 131520519 to 131521165 646 CpG island CpG island 12293
Gm30732 2 131527212 to 131530344 3132 + protein coding gene predicted gene, 30732
Gm39938 2 131537662 to 131561060 23398 + lncRNA gene predicted gene, 39938
Tssr20276 2 131538503 to 131538511 8 + TSS region transcription start site region 20276
Cpgi12294 2 131545781 to 131546759 978 CpG island CpG island 12294
Adra1d 2 131545850 to 131562283 16433 - protein coding gene adrenergic receptor, alpha 1d
Cpgi12295 2 131561032 to 131563141 2109 CpG island CpG island 12295
Tssr20277 2 131561605 to 131561619 14 + TSS region transcription start site region 20277
Gm14285 2 131561614 to 131563179 1565 + antisense lncRNA gene predicted gene 14285
Tssr20278 2 131561638 to 131561651 13 + TSS region transcription start site region 20278
Tssr26401 2 131562488 to 131562502 14 - TSS region transcription start site region 26401
Tssr26402 2 131562515 to 131562535 20 - TSS region transcription start site region 26402
Tssr26403 2 131562755 to 131562773 18 - TSS region transcription start site region 26403
D2Mit77 2 131602630 to 131602799 169 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 77
Gm14280 2 131652897 to 131721838 68941 - antisense lncRNA gene predicted gene 14280
D2Dcr74 2 131684204 to 131684312 108 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 74
D2Mit525 2 131684211 to 131684329 118 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 525
Gm30986 2 131740342 to 131749227 8885 + lncRNA gene predicted gene, 30986
Tssr657 2 131807222 to 131807223 1 + TSS region transcription start site region 657
5330413P13Rik 2 131820006 to 131847656 27650 - lincRNA gene RIKEN cDNA 5330413P13 gene
Tssr20279 2 131843122 to 131843138 16 + TSS region transcription start site region 20279
Gm14282 2 131845356 to 131845595 239 - pseudogene predicted gene 14282
Gm14281 2 131846405 to 131847674 1269 + pseudogene predicted gene 14281
Tssr26404 2 131847607 to 131847678 71 - TSS region transcription start site region 26404
Erv3 2 131853678 to 131859747 6069 - protein coding gene endogenous retroviral sequence 3
Tssr26405 2 131853703 to 131853753 50 - TSS region transcription start site region 26405
Tssr26406 2 131854456 to 131854467 11 - TSS region transcription start site region 26406
Tssr26407 2 131855028 to 131855067 39 - TSS region transcription start site region 26407
Tssr26408 2 131855134 to 131855155 21 - TSS region transcription start site region 26408
Tssr658 2 131855246 to 131855273 27 - TSS region transcription start site region 658
Tssr20280 2 131855368 to 131855378 10 + TSS region transcription start site region 20280
Tssr26409 2 131855389 to 131855398 9 - TSS region transcription start site region 26409
Tssr659 2 131855398 to 131855407 9 - TSS region transcription start site region 659
Tssr26410 2 131855413 to 131855440 27 - TSS region transcription start site region 26410
Tssr26411 2 131855452 to 131855490 38 - TSS region transcription start site region 26411
Tssr26412 2 131855531 to 131855544 13 - TSS region transcription start site region 26412
Tssr26413 2 131855621 to 131855630 9 - TSS region transcription start site region 26413
Tssr660 2 131855644 to 131855645 1 - TSS region transcription start site region 660
Tssr26414 2 131855807 to 131855818 11 - TSS region transcription start site region 26414
Tssr26415 2 131855829 to 131855840 11 - TSS region transcription start site region 26415
Tssr20281 2 131856543 to 131856553 10 + TSS region transcription start site region 20281
Tssr26416 2 131859739 to 131859755 16 - TSS region transcription start site region 26416
Tssr26417 2 131859826 to 131859827 1 - TSS region transcription start site region 26417
Lamr1-ps1 2 131904086 to 131904959 873 + pseudogene laminin receptor 1 (ribosomal protein SA), pseudogene 1
Tssr26418 2 131909775 to 131909781 6 - TSS region transcription start site region 26418
Cpgi12296 2 131909781 to 131910407 626 CpG island CpG island 12296
Prnp 2 131909928 to 131938429 28501 + protein coding gene prion protein
Tssr20282 2 131909931 to 131909948 17 + TSS region transcription start site region 20282
Tssr20283 2 131909951 to 131909979 28 + TSS region transcription start site region 20283
Prn 2 131909957 to 131956130 46173 + protein coding gene prion protein readthrough transcript
Tssr26419 2 131910698 to 131910701 3 - TSS region transcription start site region 26419
Tssr20284 2 131936698 to 131936714 16 + TSS region transcription start site region 20284
Tssr20285 2 131936792 to 131936804 12 + TSS region transcription start site region 20285
Tssr661 2 131936814 to 131936826 12 + TSS region transcription start site region 661
Tssr20286 2 131937005 to 131937018 13 + TSS region transcription start site region 20286
Tssr20287 2 131937127 to 131937146 19 + TSS region transcription start site region 20287
Tssr20288 2 131937458 to 131937476 18 + TSS region transcription start site region 20288
Tssr20289 2 131950855 to 131950867 12 + TSS region transcription start site region 20289
Prnd 2 131950861 to 131956130 5269 + protein coding gene prion like protein doppel
Tssr20290 2 131951011 to 131951028 17 + TSS region transcription start site region 20290
Cpgi12297 2 131953092 to 131953549 457 CpG island CpG island 12297
Tssr26420 2 131954993 to 131955008 15 - TSS region transcription start site region 26420
Cpgi12298 2 131955343 to 131955565 222 CpG island CpG island 12298
Mdq14 2 131981644 to 131981644 0 QTL mammary ductal QTL 14
Tssr26421 2 131991649 to 131991695 46 - TSS region transcription start site region 26421
Rassf2 2 131992850 to 132030319 37469 - protein coding gene Ras association (RalGDS/AF-6) domain family member 2
Tssr26422 2 131993055 to 131993060 5 - TSS region transcription start site region 26422
Tssr26423 2 131993589 to 131993601 12 - TSS region transcription start site region 26423
Tssr26424 2 131994184 to 131994207 23 - TSS region transcription start site region 26424
Tssr26425 2 131994315 to 131994336 21 - TSS region transcription start site region 26425
Tssr26426 2 131994614 to 131994640 26 - TSS region transcription start site region 26426
Tssr26427 2 132002678 to 132002684 6 - TSS region transcription start site region 26427
Tssr662 2 132006782 to 132006811 29 + TSS region transcription start site region 662
Tssr26428 2 132007456 to 132007478 22 - TSS region transcription start site region 26428