Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:131174531-131854551

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spef1 2 131170261 to 131174810 4549 - protein coding gene sperm flagellar 1
Tssr26387 2 131174764 to 131174779 15 - TSS region transcription start site region 26387
Tssr26388 2 131174788 to 131174815 27 - TSS region transcription start site region 26388
Tssr26389 2 131174821 to 131174837 16 - TSS region transcription start site region 26389
Cenpb 2 131177289 to 131180067 2778 - protein coding gene centromere protein B
Cpgi12286 2 131178693 to 131180353 1660 CpG island CpG island 12286
Tssr26390 2 131179985 to 131180092 107 - TSS region transcription start site region 26390
Cpgi12287 2 131186579 to 131187533 954 CpG island CpG island 12287
Tssr20247 2 131186942 to 131186971 29 + TSS region transcription start site region 20247
Cdc25b 2 131186949 to 131198497 11548 + protein coding gene cell division cycle 25B
Tssr20248 2 131186983 to 131187001 18 + TSS region transcription start site region 20248
Tssr20249 2 131187004 to 131187027 23 + TSS region transcription start site region 20249
Tssr20250 2 131187077 to 131187118 41 + TSS region transcription start site region 20250
Tssr20251 2 131189079 to 131189096 17 + TSS region transcription start site region 20251
Tssr20252 2 131193268 to 131193276 8 + TSS region transcription start site region 20252
Tssr20253 2 131207031 to 131207049 18 + TSS region transcription start site region 20253
Tssr20254 2 131207078 to 131207095 17 + TSS region transcription start site region 20254
Cpgi12288 2 131209908 to 131210724 816 CpG island CpG island 12288
Ap5s1 2 131210360 to 131213514 3154 + protein coding gene adaptor-related protein 5 complex, sigma 1 subunit
Tssr20255 2 131210363 to 131210476 113 + TSS region transcription start site region 20255
Tssr20256 2 131210501 to 131210552 51 + TSS region transcription start site region 20256
Tssr20257 2 131232751 to 131232769 18 + TSS region transcription start site region 20257
Cpgi12289 2 131233773 to 131234522 749 CpG island CpG island 12289
Tssr20258 2 131234043 to 131234136 93 + TSS region transcription start site region 20258
Mavs 2 131234063 to 131248025 13962 + protein coding gene mitochondrial antiviral signaling protein
Cpgi12290 2 131262012 to 131263187 1175 CpG island CpG island 12290
Tssr20259 2 131262042 to 131262047 5 + TSS region transcription start site region 20259
Tssr20260 2 131262469 to 131262563 94 + TSS region transcription start site region 20260
Pank2 2 131262495 to 131299188 36693 + protein coding gene pantothenate kinase 2
Tssr20261 2 131280351 to 131280367 16 + TSS region transcription start site region 20261
Tssr20262 2 131287321 to 131287324 3 + TSS region transcription start site region 20262
Mir103-2 2 131288052 to 131288137 85 + miRNA gene microRNA 103-2
Rnf24 2 131298488 to 131352892 54404 - protein coding gene ring finger protein 24
Gm14233 2 131298545 to 131299835 1290 + unclassified non-coding RNA gene predicted gene 14233
Snrpert 2 131322088 to 131322366 278 - pseudogene small nuclear ribonucleoprotein E, pseudogene
Tssr26391 2 131328982 to 131328989 7 - TSS region transcription start site region 26391
Tssr26392 2 131337634 to 131337643 9 - TSS region transcription start site region 26392
Cpgi12291 2 131352330 to 131353184 854 CpG island CpG island 12291
Tssr26393 2 131352813 to 131352832 19 - TSS region transcription start site region 26393
Tssr26394 2 131352834 to 131352856 22 - TSS region transcription start site region 26394
Tssr26395 2 131352857 to 131352889 32 - TSS region transcription start site region 26395
Tssr20263 2 131352996 to 131353022 26 + TSS region transcription start site region 20263
Gm30590 2 131353113 to 131363938 10825 + lncRNA gene predicted gene, 30590
Gm46765 2 131353158 to 131394652 41494 - lncRNA gene predicted gene, 46765
Tssr20264 2 131393089 to 131393100 11 + TSS region transcription start site region 20264
Gm22902 2 131413661 to 131413962 301 - ribozyme gene predicted gene, 22902
Gm14283 2 131414921 to 131415245 324 - pseudogene predicted gene 14283
Tssr656 2 131430646 to 131430676 30 + TSS region transcription start site region 656
Tssr26396 2 131434371 to 131434381 10 - TSS region transcription start site region 26396
Tssr26397 2 131434389 to 131434396 7 - TSS region transcription start site region 26397
Tssr26398 2 131443447 to 131443458 11 - TSS region transcription start site region 26398
Gm14304 2 131454128 to 131454640 512 - pseudogene predicted gene 14304
Tssr26399 2 131454399 to 131454413 14 - TSS region transcription start site region 26399
D2Mit307 2 131471753 to 131471901 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 307
Gm30679 2 131481838 to 131491749 9911 - lncRNA gene predicted gene, 30679
Cpgi12292 2 131491499 to 131492859 1360 CpG island CpG island 12292
Tssr26400 2 131491684 to 131491714 30 - TSS region transcription start site region 26400
Tssr20265 2 131491751 to 131491760 9 + TSS region transcription start site region 20265
Smox 2 131491784 to 131525183 33399 + protein coding gene spermine oxidase
Tssr20266 2 131491883 to 131491940 57 + TSS region transcription start site region 20266
Tssr20267 2 131491958 to 131491969 11 + TSS region transcription start site region 20267
Tssr20268 2 131495670 to 131495675 5 + TSS region transcription start site region 20268
Tssr20269 2 131498628 to 131498635 7 + TSS region transcription start site region 20269
Tssr20270 2 131499265 to 131499269 4 + TSS region transcription start site region 20270
Tssr20271 2 131505658 to 131505661 3 + TSS region transcription start site region 20271
Tssr20272 2 131506601 to 131506609 8 + TSS region transcription start site region 20272
Tssr20273 2 131508967 to 131508979 12 + TSS region transcription start site region 20273
Tssr20274 2 131514531 to 131514551 20 + TSS region transcription start site region 20274
Tssr20275 2 131514860 to 131514865 5 + TSS region transcription start site region 20275
Cpgi12293 2 131520519 to 131521165 646 CpG island CpG island 12293
Gm30732 2 131527212 to 131530344 3132 + protein coding gene predicted gene, 30732
Gm39938 2 131537662 to 131561060 23398 + lncRNA gene predicted gene, 39938
Tssr20276 2 131538503 to 131538511 8 + TSS region transcription start site region 20276
Cpgi12294 2 131545781 to 131546759 978 CpG island CpG island 12294
Adra1d 2 131545850 to 131562283 16433 - protein coding gene adrenergic receptor, alpha 1d
Cpgi12295 2 131561032 to 131563141 2109 CpG island CpG island 12295
Tssr20277 2 131561605 to 131561619 14 + TSS region transcription start site region 20277
Gm14285 2 131561614 to 131563179 1565 + antisense lncRNA gene predicted gene 14285
Tssr20278 2 131561638 to 131561651 13 + TSS region transcription start site region 20278
Tssr26401 2 131562488 to 131562502 14 - TSS region transcription start site region 26401
Tssr26402 2 131562515 to 131562535 20 - TSS region transcription start site region 26402
Tssr26403 2 131562755 to 131562773 18 - TSS region transcription start site region 26403
D2Mit77 2 131602630 to 131602799 169 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 77
Gm14280 2 131652897 to 131721838 68941 - antisense lncRNA gene predicted gene 14280
D2Dcr74 2 131684204 to 131684312 108 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 74
D2Mit525 2 131684211 to 131684329 118 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 525
Gm30986 2 131740342 to 131749227 8885 + lncRNA gene predicted gene, 30986
Tssr657 2 131807222 to 131807223 1 + TSS region transcription start site region 657
5330413P13Rik 2 131820006 to 131847656 27650 - lincRNA gene RIKEN cDNA 5330413P13 gene
Tssr20279 2 131843122 to 131843138 16 + TSS region transcription start site region 20279
Gm14282 2 131845356 to 131845595 239 - pseudogene predicted gene 14282
Gm14281 2 131846405 to 131847674 1269 + pseudogene predicted gene 14281
Tssr26404 2 131847607 to 131847678 71 - TSS region transcription start site region 26404
Erv3 2 131853678 to 131859747 6069 - protein coding gene endogenous retroviral sequence 3
Tssr26405 2 131853703 to 131853753 50 - TSS region transcription start site region 26405
Tssr26406 2 131854456 to 131854467 11 - TSS region transcription start site region 26406