Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:130625091-131055150

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ubox5 2 130590002 to 130630038 40036 - protein coding gene U box domain containing 5
Fastkd5 2 130613840 to 130630027 16187 - protein coding gene FAST kinase domains 5
Tssr20230 2 130629342 to 130629345 3 + TSS region transcription start site region 20230
Cpgi12269 2 130629459 to 130630183 724 CpG island CpG island 12269
Tssr26302 2 130629972 to 130629990 18 - TSS region transcription start site region 26302
Tssr26303 2 130629994 to 130630032 38 - TSS region transcription start site region 26303
Lzts3 2 130632839 to 130642803 9964 - protein coding gene leucine zipper, putative tumor suppressor family member 3
Tssr20231 2 130633409 to 130633423 14 + TSS region transcription start site region 20231
Cpgi12270 2 130634682 to 130635532 850 CpG island CpG island 12270
Cpgi12271 2 130635885 to 130636161 276 CpG island CpG island 12271
Tssr26304 2 130638094 to 130638113 19 - TSS region transcription start site region 26304
Tssr26305 2 130638327 to 130638339 12 - TSS region transcription start site region 26305
Tssr26306 2 130638352 to 130638390 38 - TSS region transcription start site region 26306
Cpgi12272 2 130642248 to 130643159 911 CpG island CpG island 12272
Tssr26307 2 130642770 to 130642811 41 - TSS region transcription start site region 26307
Tssr26308 2 130642822 to 130642844 22 - TSS region transcription start site region 26308
Ddrgk1 2 130654035 to 130664645 10610 - protein coding gene DDRGK domain containing 1
Tssr26309 2 130662172 to 130662186 14 - TSS region transcription start site region 26309
Cpgi12273 2 130664104 to 130664890 786 CpG island CpG island 12273
Tssr26310 2 130664565 to 130664636 71 - TSS region transcription start site region 26310
Cpgi12274 2 130667388 to 130668139 751 CpG island CpG island 12274
Itpa 2 130667610 to 130681614 14004 + protein coding gene inosine triphosphatase (nucleoside triphosphate pyrophosphatase)
Tssr26311 2 130667720 to 130667750 30 - TSS region transcription start site region 26311
Tssr20232 2 130667791 to 130667848 57 + TSS region transcription start site region 20232
Slc4a11 2 130684113 to 130697519 13406 - protein coding gene solute carrier family 4, sodium bicarbonate transporter-like, member 11
Cpgi12275 2 130696514 to 130698215 1701 CpG island CpG island 12275
Tssr26312 2 130697462 to 130697481 19 - TSS region transcription start site region 26312
Gm24893 2 130705328 to 130705696 368 - unclassified non-coding RNA gene predicted gene, 24893
4930402H24Rik 2 130706200 to 130840788 134588 - protein coding gene RIKEN cDNA 4930402H24 gene
Tssr26313 2 130714294 to 130714298 4 - TSS region transcription start site region 26313
Gm19258 2 130766458 to 130766735 277 - pseudogene predicted gene, 19258
Tssr654 2 130768284 to 130768288 4 - TSS region transcription start site region 654
Tssr26314 2 130772065 to 130772069 4 - TSS region transcription start site region 26314
Gm14057 2 130803501 to 130803982 481 - pseudogene predicted gene 14057
D2Mit338 2 130829310 to 130829459 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 338
Cpgi12276 2 130839489 to 130840626 1137 CpG island CpG island 12276
Tssr26315 2 130839683 to 130839696 13 - TSS region transcription start site region 26315
Tssr26316 2 130840050 to 130840054 4 - TSS region transcription start site region 26316
Tssr26317 2 130840060 to 130840082 22 - TSS region transcription start site region 26317
Tssr26318 2 130840083 to 130840088 5 - TSS region transcription start site region 26318
Tssr26319 2 130840091 to 130840150 59 - TSS region transcription start site region 26319
C030014O09Rik 2 130840113 to 130840967 854 unclassified gene RIKEN cDNA C030014O09 gene
Tssr20233 2 130840214 to 130840232 18 + TSS region transcription start site region 20233
6330526H18Rik 2 130869504 to 130871130 1626 unclassified gene RIKEN cDNA 6330526H18 gene
A730017L22Rik 2 130873059 to 130906396 33337 - lncRNA gene RIKEN cDNA A730017L22 gene
Gm14048 2 130880866 to 130882133 1267 + pseudogene predicted gene 14048
Cpgi12277 2 130906105 to 130907151 1046 CpG island CpG island 12277
Tssr26320 2 130906285 to 130906294 9 - TSS region transcription start site region 26320
Tssr26321 2 130906319 to 130906333 14 - TSS region transcription start site region 26321
Tssr26322 2 130906338 to 130906393 55 - TSS region transcription start site region 26322
Tssr20234 2 130906461 to 130906500 39 + TSS region transcription start site region 20234
Atrn 2 130906495 to 131030333 123838 + protein coding gene attractin
Tssr20235 2 130906505 to 130906558 53 + TSS region transcription start site region 20235
Tssr20236 2 130910831 to 130910837 6 + TSS region transcription start site region 20236
Tssr20237 2 130933079 to 130933114 35 + TSS region transcription start site region 20237
Tssr20238 2 130933129 to 130933146 17 + TSS region transcription start site region 20238
Tssr20239 2 130933149 to 130933158 9 + TSS region transcription start site region 20239
Gm14049 2 130987984 to 130988619 635 + pseudogene predicted gene 14049
Tssr26323 2 131012369 to 131012372 3 - TSS region transcription start site region 26323
Gm30286 2 131014185 to 131025161 10976 - lncRNA gene predicted gene, 30286
Tssr26324 2 131025106 to 131025125 19 - TSS region transcription start site region 26324
Tssr26325 2 131025147 to 131025159 12 - TSS region transcription start site region 26325
Gm39937 2 131031593 to 131034627 3034 + lncRNA gene predicted gene, 39937
Gfra4 2 131039632 to 131043088 3456 - protein coding gene glial cell line derived neurotrophic factor family receptor alpha 4
Mir6973b 2 131040319 to 131040398 79 - miRNA gene microRNA 6973b
Cpgi12278 2 131040791 to 131042149 1358 CpG island CpG island 12278
Tssr26326 2 131041293 to 131041313 20 - TSS region transcription start site region 26326
Tssr26327 2 131041317 to 131041356 39 - TSS region transcription start site region 26327
Tssr26328 2 131041357 to 131041368 11 - TSS region transcription start site region 26328
Tssr26329 2 131041388 to 131041471 83 - TSS region transcription start site region 26329
Tssr26330 2 131041477 to 131041554 77 - TSS region transcription start site region 26330
Adam33 2 131050819 to 131063814 12995 - protein coding gene a disintegrin and metallopeptidase domain 33
Cpgi12279 2 131053817 to 131055634 1817 CpG island CpG island 12279
Tssr26331 2 131054512 to 131054553 41 - TSS region transcription start site region 26331