Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:130434035-130884645

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vps16 2 130424339 to 130444269 19930 + protein coding gene VSP16 CORVET/HOPS core subunit
D2Mit78 2 130449734 to 130449948 214 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 78
Cpgi12265 2 130449893 to 130450944 1051 CpG island CpG island 12265
Ptpra 2 130450251 to 130554300 104049 + protein coding gene protein tyrosine phosphatase, receptor type, A
Tssr20211 2 130450259 to 130450309 50 + TSS region transcription start site region 20211
Tssr20212 2 130450310 to 130450326 16 + TSS region transcription start site region 20212
Tssr20213 2 130450329 to 130450349 20 + TSS region transcription start site region 20213
Tssr20214 2 130450379 to 130450384 5 + TSS region transcription start site region 20214
Tssr20215 2 130479701 to 130479711 10 + TSS region transcription start site region 20215
Tssr20216 2 130482382 to 130482398 16 + TSS region transcription start site region 20216
Tssr26299 2 130488737 to 130488744 7 - TSS region transcription start site region 26299
Tssr20217 2 130490557 to 130490561 4 + TSS region transcription start site region 20217
Tssr20218 2 130503981 to 130503986 5 + TSS region transcription start site region 20218
Tssr20219 2 130504280 to 130504308 28 + TSS region transcription start site region 20219
9530056E24Rik 2 130523995 to 130527284 3289 + unclassified gene RIKEN cDNA 9530056E24 gene
Gm23876 2 130531678 to 130531744 66 - miRNA gene predicted gene, 23876
Tssr20220 2 130539410 to 130539424 14 + TSS region transcription start site region 20220
Tssr20221 2 130539429 to 130539438 9 + TSS region transcription start site region 20221
Tssr20222 2 130539526 to 130539534 8 + TSS region transcription start site region 20222
Tssr20223 2 130541295 to 130541323 28 + TSS region transcription start site region 20223
4930473A02Rik 2 130543791 to 130563749 19958 - antisense lncRNA gene RIKEN cDNA 4930473A02 gene
Cpgi12266 2 130563477 to 130564450 973 CpG island CpG island 12266
Tssr26300 2 130563717 to 130563726 9 - TSS region transcription start site region 26300
Tssr20224 2 130563732 to 130563798 66 + TSS region transcription start site region 20224
Mrps26 2 130563757 to 130565394 1637 + protein coding gene mitochondrial ribosomal protein S26
Tssr20225 2 130576170 to 130576176 6 + TSS region transcription start site region 20225
Oxt 2 130576173 to 130577054 881 + protein coding gene oxytocin
Cpgi12267 2 130576176 to 130577165 989 CpG island CpG island 12267
Avp 2 130580620 to 130582554 1934 - protein coding gene arginine vasopressin
Cpgi12268 2 130580640 to 130581547 907 CpG island CpG island 12268
Tssr26301 2 130582569 to 130582574 5 - TSS region transcription start site region 26301
Tssr20226 2 130589411 to 130589422 11 + TSS region transcription start site region 20226
Tssr20227 2 130589431 to 130589451 20 + TSS region transcription start site region 20227
Tssr20228 2 130589452 to 130589464 12 + TSS region transcription start site region 20228
Tssr20229 2 130589470 to 130589483 13 + TSS region transcription start site region 20229
Ubox5 2 130590002 to 130630038 40036 - protein coding gene U box domain containing 5
Fastkd5 2 130613840 to 130630027 16187 - protein coding gene FAST kinase domains 5
Tssr20230 2 130629342 to 130629345 3 + TSS region transcription start site region 20230
Cpgi12269 2 130629459 to 130630183 724 CpG island CpG island 12269
Tssr26302 2 130629972 to 130629990 18 - TSS region transcription start site region 26302
Tssr26303 2 130629994 to 130630032 38 - TSS region transcription start site region 26303
Lzts3 2 130632839 to 130642803 9964 - protein coding gene leucine zipper, putative tumor suppressor family member 3
Tssr20231 2 130633409 to 130633423 14 + TSS region transcription start site region 20231
Cpgi12270 2 130634682 to 130635532 850 CpG island CpG island 12270
Cpgi12271 2 130635885 to 130636161 276 CpG island CpG island 12271
Tssr26304 2 130638094 to 130638113 19 - TSS region transcription start site region 26304
Tssr26305 2 130638327 to 130638339 12 - TSS region transcription start site region 26305
Tssr26306 2 130638352 to 130638390 38 - TSS region transcription start site region 26306
Cpgi12272 2 130642248 to 130643159 911 CpG island CpG island 12272
Tssr26307 2 130642770 to 130642811 41 - TSS region transcription start site region 26307
Tssr26308 2 130642822 to 130642844 22 - TSS region transcription start site region 26308
Ddrgk1 2 130654035 to 130664645 10610 - protein coding gene DDRGK domain containing 1
Tssr26309 2 130662172 to 130662186 14 - TSS region transcription start site region 26309
Cpgi12273 2 130664104 to 130664890 786 CpG island CpG island 12273
Tssr26310 2 130664565 to 130664636 71 - TSS region transcription start site region 26310
Cpgi12274 2 130667388 to 130668139 751 CpG island CpG island 12274
Itpa 2 130667610 to 130681614 14004 + protein coding gene inosine triphosphatase (nucleoside triphosphate pyrophosphatase)
Tssr26311 2 130667720 to 130667750 30 - TSS region transcription start site region 26311
Tssr20232 2 130667791 to 130667848 57 + TSS region transcription start site region 20232
Slc4a11 2 130684113 to 130697519 13406 - protein coding gene solute carrier family 4, sodium bicarbonate transporter-like, member 11
Cpgi12275 2 130696514 to 130698215 1701 CpG island CpG island 12275
Tssr26312 2 130697462 to 130697481 19 - TSS region transcription start site region 26312
Gm24893 2 130705328 to 130705696 368 - unclassified non-coding RNA gene predicted gene, 24893
4930402H24Rik 2 130706200 to 130840788 134588 - protein coding gene RIKEN cDNA 4930402H24 gene
Tssr26313 2 130714294 to 130714298 4 - TSS region transcription start site region 26313
Gm19258 2 130766458 to 130766735 277 - pseudogene predicted gene, 19258
Tssr654 2 130768284 to 130768288 4 - TSS region transcription start site region 654
Tssr26314 2 130772065 to 130772069 4 - TSS region transcription start site region 26314
Gm14057 2 130803501 to 130803982 481 - pseudogene predicted gene 14057
D2Mit338 2 130829310 to 130829459 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 338
Cpgi12276 2 130839489 to 130840626 1137 CpG island CpG island 12276
Tssr26315 2 130839683 to 130839696 13 - TSS region transcription start site region 26315
Tssr26316 2 130840050 to 130840054 4 - TSS region transcription start site region 26316
Tssr26317 2 130840060 to 130840082 22 - TSS region transcription start site region 26317
Tssr26318 2 130840083 to 130840088 5 - TSS region transcription start site region 26318
Tssr26319 2 130840091 to 130840150 59 - TSS region transcription start site region 26319
C030014O09Rik 2 130840113 to 130840967 854 unclassified gene RIKEN cDNA C030014O09 gene
Tssr20233 2 130840214 to 130840232 18 + TSS region transcription start site region 20233
6330526H18Rik 2 130869504 to 130871130 1626 unclassified gene RIKEN cDNA 6330526H18 gene
A730017L22Rik 2 130873059 to 130906396 33337 - lncRNA gene RIKEN cDNA A730017L22 gene
Gm14048 2 130880866 to 130882133 1267 + pseudogene predicted gene 14048