Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:129987593-130807598

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147 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr20191 2 130012336 to 130012350 14 + TSS region transcription start site region 20191
Tgm3 2 130012349 to 130050399 38050 + protein coding gene transglutaminase 3, E polypeptide
Mir6339 2 130016292 to 130016408 116 - miRNA gene microRNA 6339
Tssr20192 2 130038450 to 130038476 26 + TSS region transcription start site region 20192
Tssr20193 2 130040415 to 130040448 33 + TSS region transcription start site region 20193
Tssr20194 2 130044531 to 130044540 9 + TSS region transcription start site region 20194
Tssr20195 2 130044616 to 130044621 5 + TSS region transcription start site region 20195
Tssr26281 2 130048343 to 130048348 5 - TSS region transcription start site region 26281
Tssr26282 2 130048533 to 130048550 17 - TSS region transcription start site region 26282
Tssr20196 2 130048544 to 130048569 25 + TSS region transcription start site region 20196
Tssr26283 2 130048588 to 130048599 11 - TSS region transcription start site region 26283
Gm22424 2 130071724 to 130071810 86 + snoRNA gene predicted gene, 22424
Gm24665 2 130086041 to 130086169 128 + snoRNA gene predicted gene, 24665
AU015228 2 130100524 to 130101843 1319 + pseudogene expressed sequence AU015228
Cpgi12255 2 130101400 to 130101621 221 CpG island CpG island 12255
Tgm6 2 130112416 to 130154232 41816 + protein coding gene transglutaminase 6
Tssr20197 2 130123275 to 130123293 18 + TSS region transcription start site region 20197
Tssr20198 2 130123310 to 130123314 4 + TSS region transcription start site region 20198
Cpgi12256 2 130145016 to 130145208 192 CpG island CpG island 12256
Snrpb 2 130171636 to 130179385 7749 - protein coding gene small nuclear ribonucleoprotein B
Tssr20199 2 130171883 to 130171905 22 + TSS region transcription start site region 20199
Cpgi12257 2 130178547 to 130179847 1300 CpG island CpG island 12257
Tssr26284 2 130179310 to 130179376 66 - TSS region transcription start site region 26284
Tmc2 2 130195194 to 130264445 69251 + protein coding gene transmembrane channel-like gene family 2
2810036E18Rik 2 130273773 to 130274268 495 unclassified gene RIKEN cDNA 2810036E18 gene
Cpgi12258 2 130273940 to 130274890 950 CpG island CpG island 12258
Tssr26285 2 130274227 to 130274284 57 - TSS region transcription start site region 26285
Tssr20200 2 130274424 to 130274435 11 + TSS region transcription start site region 20200
Nop56 2 130274430 to 130279313 4883 + protein coding gene NOP56 ribonucleoprotein
Tssr20201 2 130274437 to 130274454 17 + TSS region transcription start site region 20201
Tssr20202 2 130275507 to 130275509 2 + TSS region transcription start site region 20202
Snord110 2 130275515 to 130275573 58 + snoRNA gene small nucleolar RNA, C/D box 110
Gm24451 2 130276237 to 130276369 132 + snoRNA gene predicted gene, 24451
Gm23187 2 130277195 to 130277280 85 + snoRNA gene predicted gene, 23187
Tssr20203 2 130277197 to 130277201 4 + TSS region transcription start site region 20203
Tssr20204 2 130277696 to 130277700 4 + TSS region transcription start site region 20204
Gm23650 2 130277697 to 130277766 69 + snoRNA gene predicted gene, 23650
Snord57 2 130278026 to 130278088 62 + snoRNA gene small nucleolar RNA, C/D box 57
Idh3b 2 130279309 to 130284542 5233 - protein coding gene isocitrate dehydrogenase 3 (NAD+) beta
Tssr26286 2 130279358 to 130279374 16 - TSS region transcription start site region 26286
Tssr26287 2 130279375 to 130279423 48 - TSS region transcription start site region 26287
Tssr26288 2 130279475 to 130279492 17 - TSS region transcription start site region 26288
Tssr26289 2 130279629 to 130279652 23 - TSS region transcription start site region 26289
Cpgi12259 2 130283843 to 130284638 795 CpG island CpG island 12259
Tssr26290 2 130284422 to 130284451 29 - TSS region transcription start site region 26290
Tssr652 2 130292304 to 130292305 1 + TSS region transcription start site region 652
Gm30169 2 130293561 to 130295112 1551 - lncRNA gene predicted gene, 30169
Cpgi12260 2 130294628 to 130296564 1936 CpG island CpG island 12260
Tssr20205 2 130295148 to 130295236 88 + TSS region transcription start site region 20205
Ebf4 2 130295249 to 130370482 75233 + protein coding gene early B cell factor 4
Gm39936 2 130344471 to 130347244 2773 + lncRNA gene predicted gene, 39936
Cpgi12261 2 130361710 to 130362586 876 CpG island CpG island 12261
Cpgi12262 2 130365314 to 130365729 415 CpG island CpG island 12262
Tssr20206 2 130371346 to 130371349 3 + TSS region transcription start site region 20206
Gm14044 2 130384883 to 130385329 446 - pseudogene predicted gene 14044
C130063K03Rik 2 130388030 to 130389703 1673 unclassified gene RIKEN cDNA C130063K03 gene
Cpxm1 2 130390775 to 130397574 6799 - protein coding gene carboxypeptidase X 1 (M14 family)
Tssr26291 2 130393245 to 130393254 9 - TSS region transcription start site region 26291
Tssr26292 2 130393263 to 130393279 16 - TSS region transcription start site region 26292
Cpgi12263 2 130397172 to 130398191 1019 CpG island CpG island 12263
Tssr26293 2 130397525 to 130397587 62 - TSS region transcription start site region 26293
Tssr653 2 130397593 to 130397598 5 - TSS region transcription start site region 653
Gm14042 2 130400437 to 130401269 832 + pseudogene predicted gene 14042
Gm28372 2 130405239 to 130408256 3017 + protein coding gene predicted gene 28372
Tssr20207 2 130405256 to 130405296 40 + TSS region transcription start site region 20207
1700020A23Rik 2 130405259 to 130406074 815 + protein coding gene RIKEN cDNA 1700020A23 gene
Tssr20208 2 130405771 to 130405782 11 + TSS region transcription start site region 20208
Tssr20209 2 130406504 to 130406532 28 + TSS region transcription start site region 20209
Tmem239 2 130406522 to 130407794 1272 + protein coding gene transmembrane 239
D2Mit258 2 130407617 to 130407721 104 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 258
Pced1a 2 130417683 to 130424641 6958 - protein coding gene PC-esterase domain containing 1A
Cpgi12264 2 130423408 to 130424925 1517 CpG island CpG island 12264
Tssr26294 2 130423748 to 130423812 64 - TSS region transcription start site region 26294
Tssr26295 2 130424242 to 130424293 51 - TSS region transcription start site region 26295
Tssr26296 2 130424296 to 130424306 10 - TSS region transcription start site region 26296
Tssr20210 2 130424321 to 130424393 72 + TSS region transcription start site region 20210
Vps16 2 130424339 to 130444269 19930 + protein coding gene VSP16 CORVET/HOPS core subunit
Tssr26297 2 130424673 to 130424728 55 - TSS region transcription start site region 26297
Tssr26298 2 130424742 to 130424790 48 - TSS region transcription start site region 26298
D2Mit78 2 130449734 to 130449948 214 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 78
Cpgi12265 2 130449893 to 130450944 1051 CpG island CpG island 12265
Ptpra 2 130450251 to 130554300 104049 + protein coding gene protein tyrosine phosphatase, receptor type, A
Tssr20211 2 130450259 to 130450309 50 + TSS region transcription start site region 20211
Tssr20212 2 130450310 to 130450326 16 + TSS region transcription start site region 20212
Tssr20213 2 130450329 to 130450349 20 + TSS region transcription start site region 20213
Tssr20214 2 130450379 to 130450384 5 + TSS region transcription start site region 20214
Tssr20215 2 130479701 to 130479711 10 + TSS region transcription start site region 20215
Tssr20216 2 130482382 to 130482398 16 + TSS region transcription start site region 20216
Tssr26299 2 130488737 to 130488744 7 - TSS region transcription start site region 26299
Tssr20217 2 130490557 to 130490561 4 + TSS region transcription start site region 20217
Tssr20218 2 130503981 to 130503986 5 + TSS region transcription start site region 20218
Tssr20219 2 130504280 to 130504308 28 + TSS region transcription start site region 20219
9530056E24Rik 2 130523995 to 130527284 3289 + unclassified gene RIKEN cDNA 9530056E24 gene
Gm23876 2 130531678 to 130531744 66 - miRNA gene predicted gene, 23876
Tssr20220 2 130539410 to 130539424 14 + TSS region transcription start site region 20220
Tssr20221 2 130539429 to 130539438 9 + TSS region transcription start site region 20221
Tssr20222 2 130539526 to 130539534 8 + TSS region transcription start site region 20222
Tssr20223 2 130541295 to 130541323 28 + TSS region transcription start site region 20223
4930473A02Rik 2 130543791 to 130563749 19958 - antisense lncRNA gene RIKEN cDNA 4930473A02 gene
Cpgi12266 2 130563477 to 130564450 973 CpG island CpG island 12266
Tssr26300 2 130563717 to 130563726 9 - TSS region transcription start site region 26300
Tssr20224 2 130563732 to 130563798 66 + TSS region transcription start site region 20224
Mrps26 2 130563757 to 130565394 1637 + protein coding gene mitochondrial ribosomal protein S26
Tssr20225 2 130576170 to 130576176 6 + TSS region transcription start site region 20225
Oxt 2 130576173 to 130577054 881 + protein coding gene oxytocin
Cpgi12267 2 130576176 to 130577165 989 CpG island CpG island 12267
Avp 2 130580620 to 130582554 1934 - protein coding gene arginine vasopressin
Cpgi12268 2 130580640 to 130581547 907 CpG island CpG island 12268
Tssr26301 2 130582569 to 130582574 5 - TSS region transcription start site region 26301
Tssr20226 2 130589411 to 130589422 11 + TSS region transcription start site region 20226
Tssr20227 2 130589431 to 130589451 20 + TSS region transcription start site region 20227
Tssr20228 2 130589452 to 130589464 12 + TSS region transcription start site region 20228
Tssr20229 2 130589470 to 130589483 13 + TSS region transcription start site region 20229
Ubox5 2 130590002 to 130630038 40036 - protein coding gene U box domain containing 5
Fastkd5 2 130613840 to 130630027 16187 - protein coding gene FAST kinase domains 5
Tssr20230 2 130629342 to 130629345 3 + TSS region transcription start site region 20230
Cpgi12269 2 130629459 to 130630183 724 CpG island CpG island 12269
Tssr26302 2 130629972 to 130629990 18 - TSS region transcription start site region 26302
Tssr26303 2 130629994 to 130630032 38 - TSS region transcription start site region 26303
Lzts3 2 130632839 to 130642803 9964 - protein coding gene leucine zipper, putative tumor suppressor family member 3
Tssr20231 2 130633409 to 130633423 14 + TSS region transcription start site region 20231
Cpgi12270 2 130634682 to 130635532 850 CpG island CpG island 12270
Cpgi12271 2 130635885 to 130636161 276 CpG island CpG island 12271
Tssr26304 2 130638094 to 130638113 19 - TSS region transcription start site region 26304
Tssr26305 2 130638327 to 130638339 12 - TSS region transcription start site region 26305
Tssr26306 2 130638352 to 130638390 38 - TSS region transcription start site region 26306
Cpgi12272 2 130642248 to 130643159 911 CpG island CpG island 12272
Tssr26307 2 130642770 to 130642811 41 - TSS region transcription start site region 26307
Tssr26308 2 130642822 to 130642844 22 - TSS region transcription start site region 26308
Ddrgk1 2 130654035 to 130664645 10610 - protein coding gene DDRGK domain containing 1
Tssr26309 2 130662172 to 130662186 14 - TSS region transcription start site region 26309
Cpgi12273 2 130664104 to 130664890 786 CpG island CpG island 12273
Tssr26310 2 130664565 to 130664636 71 - TSS region transcription start site region 26310
Cpgi12274 2 130667388 to 130668139 751 CpG island CpG island 12274
Itpa 2 130667610 to 130681614 14004 + protein coding gene inosine triphosphatase (nucleoside triphosphate pyrophosphatase)
Tssr26311 2 130667720 to 130667750 30 - TSS region transcription start site region 26311
Tssr20232 2 130667791 to 130667848 57 + TSS region transcription start site region 20232
Slc4a11 2 130684113 to 130697519 13406 - protein coding gene solute carrier family 4, sodium bicarbonate transporter-like, member 11
Cpgi12275 2 130696514 to 130698215 1701 CpG island CpG island 12275
Tssr26312 2 130697462 to 130697481 19 - TSS region transcription start site region 26312
Gm24893 2 130705328 to 130705696 368 - unclassified non-coding RNA gene predicted gene, 24893
4930402H24Rik 2 130706200 to 130840788 134588 - protein coding gene RIKEN cDNA 4930402H24 gene
Tssr26313 2 130714294 to 130714298 4 - TSS region transcription start site region 26313
Gm19258 2 130766458 to 130766735 277 - pseudogene predicted gene, 19258
Tssr654 2 130768284 to 130768288 4 - TSS region transcription start site region 654
Tssr26314 2 130772065 to 130772069 4 - TSS region transcription start site region 26314
Gm14057 2 130803501 to 130803982 481 - pseudogene predicted gene 14057