Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:128744904-129104905

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mertk 2 128698956 to 128802894 103938 + protein coding gene MER proto-oncogene tyrosine kinase
Gm14011 2 128751271 to 128753705 2434 - antisense lncRNA gene predicted gene 14011
Tssr648 2 128751901 to 128751934 33 + TSS region transcription start site region 648
Tssr20070 2 128761814 to 128761818 4 + TSS region transcription start site region 20070
Tssr20071 2 128769218 to 128769224 6 + TSS region transcription start site region 20071
Gm23172 2 128780376 to 128780499 123 + snoRNA gene predicted gene, 23172
Nsv1 2 128781466 to 128781606 140 QTL Neuroadapted Sindbis viral RNA level 1
D2Mit447 2 128781466 to 128781606 140 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 447
nmf62 2 128781466 to 148620946 19839480 heritable phenotypic marker neuroscience mutagenesis facility, 62
Nmf220 2 128781606 to 80175610 -48605996 heritable phenotypic marker neuroscience mutagenesis facility, 220
Tssr20072 2 128792373 to 128792392 19 + TSS region transcription start site region 20072
Tssr20073 2 128796917 to 128796935 18 + TSS region transcription start site region 20073
Tssr20074 2 128796941 to 128796972 31 + TSS region transcription start site region 20074
Tssr20075 2 128798044 to 128798048 4 + TSS region transcription start site region 20075
Tssr20076 2 128801811 to 128801822 11 + TSS region transcription start site region 20076
Tssr20077 2 128801863 to 128801872 9 + TSS region transcription start site region 20077
Tssr20078 2 128802296 to 128802308 12 + TSS region transcription start site region 20078
Tssr20079 2 128802313 to 128802326 13 + TSS region transcription start site region 20079
Tssr20080 2 128802380 to 128802398 18 + TSS region transcription start site region 20080
Tssr26175 2 128802675 to 128802680 5 - TSS region transcription start site region 26175
Cpgi12238 2 128817857 to 128818899 1042 CpG island CpG island 12238
Tssr20081 2 128818104 to 128818135 31 + TSS region transcription start site region 20081
Tmem87b 2 128818118 to 128854261 36143 + protein coding gene transmembrane protein 87B
Tssr20082 2 128818295 to 128818351 56 + TSS region transcription start site region 20082
Tssr26176 2 128819077 to 128819097 20 - TSS region transcription start site region 26176
Tssr20083 2 128819502 to 128819506 4 + TSS region transcription start site region 20083
Tssr20084 2 128820698 to 128820718 20 + TSS region transcription start site region 20084
Tssr20085 2 128833717 to 128833721 4 + TSS region transcription start site region 20085
Tssr20086 2 128845577 to 128845583 6 + TSS region transcription start site region 20086
Tssr20087 2 128862947 to 128862958 11 + TSS region transcription start site region 20087
Cpgi12239 2 128863727 to 128864367 640 CpG island CpG island 12239
Fbln7 2 128863855 to 128897034 33179 + protein coding gene fibulin 7
Tssr20088 2 128863921 to 128863999 78 + TSS region transcription start site region 20088
Tssr20089 2 128864008 to 128864021 13 + TSS region transcription start site region 20089
Cpgi12240 2 128892206 to 128892656 450 CpG island CpG island 12240
Gm46763 2 128907296 to 128923214 15918 - lncRNA gene predicted gene, 46763
Tssr20090 2 128924904 to 128924905 1 + TSS region transcription start site region 20090
Gm22859 2 128925571 to 128925692 121 - miRNA gene predicted gene, 22859
Zc3h8 2 128926268 to 128944077 17809 - protein coding gene zinc finger CCCH type containing 8
Cpgi12241 2 128943528 to 128944321 793 CpG island CpG island 12241
Tssr26177 2 128943960 to 128943976 16 - TSS region transcription start site region 26177
Tssr26178 2 128943985 to 128944034 49 - TSS region transcription start site region 26178
Gm14028 2 128952972 to 128953450 478 - pseudogene predicted gene 14028
4933427J07Rik 2 128955671 to 128957861 2190 - antisense lncRNA gene RIKEN cDNA 4933427J07 gene
Gm10762 2 128966593 to 128967725 1132 - protein coding gene predicted gene 10762
Cpgi12242 2 128966957 to 128968571 1614 CpG island CpG island 12242
Tssr26179 2 128967233 to 128967262 29 - TSS region transcription start site region 26179
Tssr20091 2 128967349 to 128967380 31 + TSS region transcription start site region 20091
Tssr20092 2 128967383 to 128967443 60 + TSS region transcription start site region 20092
Zc3h6 2 128967402 to 129018563 51161 + protein coding gene zinc finger CCCH type containing 6
Tssr20093 2 128967778 to 128967811 33 + TSS region transcription start site region 20093
Tssr26180 2 128967996 to 128968030 34 - TSS region transcription start site region 26180
Tssr26181 2 128968043 to 128968064 21 - TSS region transcription start site region 26181
Tssr26182 2 128968225 to 128968241 16 - TSS region transcription start site region 26182
Gm14027 2 129016952 to 129021756 4804 + unclassified non-coding RNA gene predicted gene 14027
Tssr26183 2 129019684 to 129019687 3 - TSS region transcription start site region 26183
Vinac1 2 129025073 to 129048172 23099 - protein coding gene vinculin/alpha-catenin family member 1
4930402C16Rik 2 129038545 to 129039979 1434 unclassified gene RIKEN cDNA 4930402C16 gene
Cpgi12243 2 129038708 to 129039668 960 CpG island CpG island 12243
Tssr26184 2 129055810 to 129055817 7 - TSS region transcription start site region 26184
Gm14022 2 129060946 to 129065686 4740 - unclassified non-coding RNA gene predicted gene 14022
Cpgi12244 2 129065347 to 129066608 1261 CpG island CpG island 12244
Tssr26185 2 129065900 to 129065916 16 - TSS region transcription start site region 26185
Tssr20094 2 129065934 to 129065994 60 + TSS region transcription start site region 20094
Ttl 2 129065947 to 129096283 30336 + protein coding gene tubulin tyrosine ligase
Tssr20095 2 129066003 to 129066015 12 + TSS region transcription start site region 20095
D2Mit399.2 2 129089728 to 129089839 111 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 399.2
D2Mit399.1 2 129089906 to 129090015 109 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 399.1
Gm46764 2 129094408 to 129100949 6541 - lncRNA gene predicted gene, 46764
Cpgi12245 2 129100870 to 129101326 456 CpG island CpG island 12245
Tssr26186 2 129100907 to 129100957 50 - TSS region transcription start site region 26186
Tssr20096 2 129100982 to 129100989 7 + TSS region transcription start site region 20096
Polr1b 2 129100995 to 129126594 25599 + protein coding gene polymerase (RNA) I polypeptide B
Tssr20097 2 129101000 to 129101066 66 + TSS region transcription start site region 20097
Tssr20098 2 129101074 to 129101083 9 + TSS region transcription start site region 20098