Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:127980259-128830270

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Actre3 2 112194642 to 128331901 16137259 QTL activity response to ethanol 3
Actre4 2 112194642 to 128331901 16137259 QTL activity response to ethanol 4
Acoxl 2 127838876 to 128123873 284997 + protein coding gene acyl-Coenzyme A oxidase-like
Tssr20037 2 128015183 to 128015187 4 + TSS region transcription start site region 20037
Tssr26149 2 128054962 to 128054967 5 - TSS region transcription start site region 26149
Tssr20038 2 128055171 to 128055184 13 + TSS region transcription start site region 20038
Tssr20039 2 128055191 to 128055202 11 + TSS region transcription start site region 20039
Tssr20040 2 128063100 to 128063109 9 + TSS region transcription start site region 20040
Tssr20041 2 128063121 to 128063139 18 + TSS region transcription start site region 20041
Gm23101 2 128089924 to 128090060 136 + snRNA gene predicted gene, 23101
Tssr638 2 128114376 to 128114379 3 + TSS region transcription start site region 638
D2Mit487 2 128115674 to 128115768 94 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 487
Gm39926 2 128122229 to 128126230 4001 - lncRNA gene predicted gene, 39926
Cpgi12233 2 128122856 to 128123217 361 CpG island CpG island 12233
Cpgi12234 2 128123540 to 128123956 416 CpG island CpG island 12234
Cpgi12235 2 128125028 to 128128258 3230 CpG island CpG island 12235
Tssr20042 2 128126030 to 128126056 26 + TSS region transcription start site region 20042
Bcl2l11 2 128126038 to 128162547 36509 + protein coding gene BCL2-like 11 (apoptosis facilitator)
Tssr26150 2 128127400 to 128127412 12 - TSS region transcription start site region 26150
Tssr20043 2 128127558 to 128127572 14 + TSS region transcription start site region 20043
Tssr20044 2 128127587 to 128127643 56 + TSS region transcription start site region 20044
Tssr26151 2 128128024 to 128128032 8 - TSS region transcription start site region 26151
Tssr20045 2 128128111 to 128128124 13 + TSS region transcription start site region 20045
Tssr20046 2 128128125 to 128128152 27 + TSS region transcription start site region 20046
Tssr20047 2 128128717 to 128128735 18 + TSS region transcription start site region 20047
Tssr20048 2 128132618 to 128132622 4 + TSS region transcription start site region 20048
Tssr20049 2 128158691 to 128158697 6 + TSS region transcription start site region 20049
Tssr639 2 128159264 to 128159269 5 + TSS region transcription start site region 639
Tssr20050 2 128159285 to 128159295 10 + TSS region transcription start site region 20050
Tssr20051 2 128169750 to 128169759 9 + TSS region transcription start site region 20051
Tssr26152 2 128179148 to 128179172 24 - TSS region transcription start site region 26152
Gm14009 2 128189987 to 128204634 14647 + lincRNA gene predicted gene 14009
Tssr20052 2 128190429 to 128190461 32 + TSS region transcription start site region 20052
Tssr20053 2 128204258 to 128204265 7 + TSS region transcription start site region 20053
Tssr640 2 128204292 to 128204310 18 + TSS region transcription start site region 640
Tssr20054 2 128204332 to 128204347 15 + TSS region transcription start site region 20054
Gm14012 2 128237693 to 128239643 1950 - lincRNA gene predicted gene 14012
Tssr26153 2 128257705 to 128257743 38 - TSS region transcription start site region 26153
Tssr26154 2 128294999 to 128295008 9 - TSS region transcription start site region 26154
Tssr26155 2 128295035 to 128295044 9 - TSS region transcription start site region 26155
Morrbid 2 128298663 to 128429351 130688 - lincRNA gene myeloid RNA regulator of BCL2L11 induced cell death
Tssr26156 2 128306592 to 128306605 13 - TSS region transcription start site region 26156
Tssr641 2 128306973 to 128306982 9 + TSS region transcription start site region 641
Tssr642 2 128307005 to 128307010 5 + TSS region transcription start site region 642
Tssr26157 2 128318879 to 128318889 10 - TSS region transcription start site region 26157
Tssr643 2 128319211 to 128319243 32 + TSS region transcription start site region 643
Lgth2 2 128331784 to 128331901 117 QTL body length 2
Pcfm2 2 128331784 to 128331901 117 QTL periosteal circumference and femur length 2
D2Mit304 2 128331784 to 128331901 117 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 304
Skmw9 2 128331784 to 128331901 117 QTL skeletal muscle weight 9
Gnf4 2 128331784 to 132872237 4540453 QTL growth and fatness 4
Hrq1 2 128331784 to 128331901 117 QTL heart rate QTL 1
D2Dcr73 2 128331811 to 128331905 94 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 73
Tssr26158 2 128339489 to 128339491 2 - TSS region transcription start site region 26158
Tssr20055 2 128339901 to 128339914 13 + TSS region transcription start site region 20055
Tssr20056 2 128364416 to 128364439 23 + TSS region transcription start site region 20056
Tssr26159 2 128382607 to 128382621 14 - TSS region transcription start site region 26159
Tssr26160 2 128405259 to 128405270 11 - TSS region transcription start site region 26160
Tssr644 2 128406473 to 128406477 4 - TSS region transcription start site region 644
Tssr26161 2 128406636 to 128406640 4 - TSS region transcription start site region 26161
Tssr26162 2 128422218 to 128422241 23 - TSS region transcription start site region 26162
Gm14010 2 128423654 to 128424565 911 + lincRNA gene predicted gene 14010
Tssr20057 2 128428327 to 128428351 24 + TSS region transcription start site region 20057
Tssr645 2 128428916 to 128428933 17 - TSS region transcription start site region 645
Tssr26163 2 128429073 to 128429091 18 - TSS region transcription start site region 26163
Tssr26164 2 128429141 to 128429146 5 - TSS region transcription start site region 26164
Tssr26165 2 128429157 to 128429166 9 - TSS region transcription start site region 26165
Tssr26166 2 128429177 to 128429226 49 - TSS region transcription start site region 26166
Tssr26167 2 128429236 to 128429259 23 - TSS region transcription start site region 26167
Tssr26168 2 128429317 to 128429362 45 - TSS region transcription start site region 26168
Tssr26169 2 128429385 to 128429399 14 - TSS region transcription start site region 26169
Tssr646 2 128429480 to 128429490 10 + TSS region transcription start site region 646
Tssr647 2 128429547 to 128429579 32 + TSS region transcription start site region 647
Gm36154 2 128430437 to 128466515 36078 - lncRNA gene predicted gene, 36154
Gm29010 2 128433723 to 128460051 26328 + lincRNA gene predicted gene 29010
Tssr26170 2 128466468 to 128466478 10 - TSS region transcription start site region 26170
Tssr26171 2 128467513 to 128467522 9 - TSS region transcription start site region 26171
Tssr26172 2 128467525 to 128467531 6 - TSS region transcription start site region 26172
Gm39928 2 128490600 to 128549717 59117 - lncRNA gene predicted gene, 39928
Gm39927 2 128520024 to 128521888 1864 - lncRNA gene predicted gene, 39927
Gm14006 2 128557254 to 128558234 980 - pseudogene predicted gene 14006
Gm36203 2 128570156 to 128591162 21006 - lncRNA gene predicted gene, 36203
Gm14008 2 128587895 to 128588168 273 - pseudogene predicted gene 14008
Tssr20058 2 128591205 to 128591223 18 + TSS region transcription start site region 20058
Spdye4c 2 128591209 to 128598464 7255 + protein coding gene speedy/RINGO cell cycle regulator family, member E4C
Tssr20059 2 128591233 to 128591244 11 + TSS region transcription start site region 20059
Gm39929 2 128601515 to 128605384 3869 - lincRNA gene predicted gene, 39929
Gm14007 2 128606985 to 128607194 209 + pseudogene predicted gene 14007
Anapc1 2 128610104 to 128687391 77287 - protein coding gene anaphase promoting complex subunit 1
Cpgi12236 2 128686650 to 128687552 902 CpG island CpG island 12236
Tssr26173 2 128687357 to 128687396 39 - TSS region transcription start site region 26173
Tssr26174 2 128687400 to 128687411 11 - TSS region transcription start site region 26174
Gm39931 2 128687756 to 128698922 11166 - lncRNA gene predicted gene, 39931
Cpgi12237 2 128698725 to 128699612 887 CpG island CpG island 12237
Tssr20060 2 128698822 to 128698833 11 + TSS region transcription start site region 20060
Tssr20061 2 128698865 to 128698897 32 + TSS region transcription start site region 20061
Tssr20062 2 128698903 to 128698924 21 + TSS region transcription start site region 20062
Mertk 2 128698956 to 128802894 103938 + protein coding gene MER proto-oncogene tyrosine kinase
Tssr20063 2 128704801 to 128704819 18 + TSS region transcription start site region 20063
Tssr20064 2 128708716 to 128708734 18 + TSS region transcription start site region 20064
Tssr20065 2 128708756 to 128708783 27 + TSS region transcription start site region 20065
D2Mit305.1 2 128709021 to 128709130 109 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 305.1
Tssr20066 2 128709055 to 128709065 10 + TSS region transcription start site region 20066
Tssr20067 2 128709091 to 128709107 16 + TSS region transcription start site region 20067
Chab1 2 128709108 to 128709243 135 QTL cholesterol absorption 1
D2Mit305 2 128709108 to 128709243 135 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 305
Tssr20068 2 128729291 to 128729305 14 + TSS region transcription start site region 20068
Tssr20069 2 128738266 to 128738277 11 + TSS region transcription start site region 20069
Gm14011 2 128751271 to 128753705 2434 - antisense lncRNA gene predicted gene 14011
Tssr648 2 128751901 to 128751934 33 + TSS region transcription start site region 648
Tssr20070 2 128761814 to 128761818 4 + TSS region transcription start site region 20070
Tssr20071 2 128769218 to 128769224 6 + TSS region transcription start site region 20071
Gm23172 2 128780376 to 128780499 123 + snoRNA gene predicted gene, 23172
Nsv1 2 128781466 to 128781606 140 QTL Neuroadapted Sindbis viral RNA level 1
D2Mit447 2 128781466 to 128781606 140 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 447
nmf62 2 128781466 to 148620946 19839480 heritable phenotypic marker neuroscience mutagenesis facility, 62
Nmf220 2 128781606 to 80175610 -48605996 heritable phenotypic marker neuroscience mutagenesis facility, 220
Tssr20072 2 128792373 to 128792392 19 + TSS region transcription start site region 20072
Tssr20073 2 128796917 to 128796935 18 + TSS region transcription start site region 20073
Tssr20074 2 128796941 to 128796972 31 + TSS region transcription start site region 20074
Tssr20075 2 128798044 to 128798048 4 + TSS region transcription start site region 20075
Tssr20076 2 128801811 to 128801822 11 + TSS region transcription start site region 20076
Tssr20077 2 128801863 to 128801872 9 + TSS region transcription start site region 20077
Tssr20078 2 128802296 to 128802308 12 + TSS region transcription start site region 20078
Tssr20079 2 128802313 to 128802326 13 + TSS region transcription start site region 20079
Tssr20080 2 128802380 to 128802398 18 + TSS region transcription start site region 20080
Tssr26175 2 128802675 to 128802680 5 - TSS region transcription start site region 26175
Cpgi12238 2 128817857 to 128818899 1042 CpG island CpG island 12238
Tssr20081 2 128818104 to 128818135 31 + TSS region transcription start site region 20081
Tmem87b 2 128818118 to 128854261 36143 + protein coding gene transmembrane protein 87B
Tssr20082 2 128818295 to 128818351 56 + TSS region transcription start site region 20082
Tssr26176 2 128819077 to 128819097 20 - TSS region transcription start site region 26176
Tssr20083 2 128819502 to 128819506 4 + TSS region transcription start site region 20083
Tssr20084 2 128820698 to 128820718 20 + TSS region transcription start site region 20084