Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:127398727-130329367

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552 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmr28a 2 103265371 to 129371085 26105714 QTL leishmaniasis resistance 28a
Actre4 2 112194642 to 128331901 16137259 QTL activity response to ethanol 4
Actre3 2 112194642 to 128331901 16137259 QTL activity response to ethanol 3
Cpgi12221 2 127425004 to 127425331 327 CpG island CpG island 12221
Tssr20020 2 127425155 to 127425194 39 + TSS region transcription start site region 20020
Gpat2 2 127425199 to 127436092 10893 + protein coding gene glycerol-3-phosphate acyltransferase 2, mitochondrial
Gm39924 2 127428054 to 127435068 7014 - lncRNA gene predicted gene, 39924
Fahd2a 2 127436215 to 127444565 8350 - protein coding gene fumarylacetoacetate hydrolase domain containing 2A
Cpgi12222 2 127444203 to 127444753 550 CpG island CpG island 12222
Tssr26118 2 127444524 to 127444572 48 - TSS region transcription start site region 26118
Kcnip3 2 127456498 to 127522094 65596 - protein coding gene Kv channel interacting protein 3, calsenilin
Tssr26119 2 127458210 to 127458232 22 - TSS region transcription start site region 26119
Tssr26120 2 127458307 to 127458332 25 - TSS region transcription start site region 26120
Tssr20021 2 127462990 to 127462994 4 + TSS region transcription start site region 20021
Gm22613 2 127473017 to 127473308 291 - unclassified non-coding RNA gene predicted gene, 22613
Cpgi12223 2 127481745 to 127483422 1677 CpG island CpG island 12223
Tssr26121 2 127482541 to 127482577 36 - TSS region transcription start site region 26121
Tssr20022 2 127483627 to 127483633 6 + TSS region transcription start site region 20022
Cpgi12224 2 127484282 to 127484752 470 CpG island CpG island 12224
Tssr26122 2 127511109 to 127511120 11 - TSS region transcription start site region 26122
Tssr26123 2 127511135 to 127511140 5 - TSS region transcription start site region 26123
Tssr20023 2 127514743 to 127514756 13 + TSS region transcription start site region 20023
Tssr26124 2 127521273 to 127521282 9 - TSS region transcription start site region 26124
Tssr26125 2 127521306 to 127521322 16 - TSS region transcription start site region 26125
Tssr26126 2 127521331 to 127521357 26 - TSS region transcription start site region 26126
Tssr26127 2 127521358 to 127521375 17 - TSS region transcription start site region 26127
Gm35478 2 127521561 to 127531815 10254 + lncRNA gene predicted gene, 35478
Prom2 2 127526953 to 127541417 14464 - protein coding gene prominin 2
Tssr26128 2 127538980 to 127538999 19 - TSS region transcription start site region 26128
Cpgi12225 2 127541061 to 127541620 559 CpG island CpG island 12225
Tssr26129 2 127541389 to 127541405 16 - TSS region transcription start site region 26129
Tssr26130 2 127541412 to 127541454 42 - TSS region transcription start site region 26130
Gm14229 2 127568577 to 127569426 849 - pseudogene predicted gene 14229
Zfp661 2 127574662 to 127587094 12432 - protein coding gene zinc finger protein 661
Cpgi12226 2 127584348 to 127584906 558 CpG island CpG island 12226
Tssr26131 2 127584668 to 127584703 35 - TSS region transcription start site region 26131
Cpgi12227 2 127587061 to 127588024 963 CpG island CpG island 12227
Tssr20024 2 127587214 to 127587263 49 + TSS region transcription start site region 20024
Tssr20025 2 127587268 to 127587279 11 + TSS region transcription start site region 20025
Tssr20026 2 127587395 to 127587430 35 + TSS region transcription start site region 20026
Mrps5 2 127587426 to 127603986 16560 + protein coding gene mitochondrial ribosomal protein S5
Tssr20027 2 127590321 to 127590369 48 + TSS region transcription start site region 20027
Tssr20028 2 127590742 to 127590759 17 + TSS region transcription start site region 20028
Mal 2 127633226 to 127656695 23469 - protein coding gene myelin and lymphocyte protein, T cell differentiation protein
Tssr26132 2 127633600 to 127633617 17 - TSS region transcription start site region 26132
Bbaa15 2 127647738 to 127647887 149 QTL B.burgdorferi-associated arthritis 15
D2Mit278 2 127647738 to 127647887 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 278
Cpgi12228 2 127656018 to 127656679 661 CpG island CpG island 12228
Tssr26133 2 127656157 to 127656166 9 - TSS region transcription start site region 26133
Tssr26134 2 127656182 to 127656196 14 - TSS region transcription start site region 26134
Tssr26135 2 127656209 to 127656232 23 - TSS region transcription start site region 26135
Tssr26136 2 127656245 to 127656256 11 - TSS region transcription start site region 26136
Gm22889 2 127677670 to 127677727 57 + snoRNA gene predicted gene, 22889
Gm14245 2 127688405 to 127690247 1842 + pseudogene predicted gene 14245
Tssr20029 2 127691831 to 127691842 11 + TSS region transcription start site region 20029
Tssr20030 2 127691846 to 127691878 32 + TSS region transcription start site region 20030
Tssr20031 2 127691893 to 127691906 13 + TSS region transcription start site region 20031
Gm14244 2 127691899 to 127700488 8589 + antisense lncRNA gene predicted gene 14244
Tssr20032 2 127695857 to 127695875 18 + TSS region transcription start site region 20032
Tssr20033 2 127695898 to 127695903 5 + TSS region transcription start site region 20033
Tssr20034 2 127702413 to 127702421 8 + TSS region transcription start site region 20034
D2Dcr72 2 127702508 to 127702609 101 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 72
Mall 2 127704390 to 127729897 25507 - protein coding gene mal, T cell differentiation protein-like
Tssr26137 2 127705485 to 127705515 30 - TSS region transcription start site region 26137
Tssr26138 2 127705667 to 127705681 14 - TSS region transcription start site region 26138
Tssr26139 2 127705746 to 127705753 7 - TSS region transcription start site region 26139
Tssr26140 2 127705769 to 127705780 11 - TSS region transcription start site region 26140
Cpgi12229 2 127729652 to 127730065 413 CpG island CpG island 12229
Tssr26141 2 127729872 to 127729936 64 - TSS region transcription start site region 26141
Nphp1 2 127740732 to 127788897 48165 - protein coding gene nephronophthisis 1 (juvenile) homolog (human)
Tssr26142 2 127744513 to 127744560 47 - TSS region transcription start site region 26142
Tssr26143 2 127755717 to 127755718 1 - TSS region transcription start site region 26143
Cpgi12230 2 127788580 to 127788969 389 CpG island CpG island 12230
Tssr26144 2 127788854 to 127788900 46 - TSS region transcription start site region 26144
Mtln 2 127791388 to 127792488 1100 - protein coding gene mitoregulin
Cpgi12231 2 127792068 to 127792704 636 CpG island CpG island 12231
Tssr26145 2 127792467 to 127792505 38 - TSS region transcription start site region 26145
Bub1 2 127801122 to 127831865 30743 - protein coding gene BUB1, mitotic checkpoint serine/threonine kinase
Tssr26146 2 127811888 to 127811905 17 - TSS region transcription start site region 26146
Cpgi12232 2 127831430 to 127832076 646 CpG island CpG island 12232
Tssr26147 2 127831817 to 127831875 58 - TSS region transcription start site region 26147
Tssr20035 2 127838784 to 127838799 15 + TSS region transcription start site region 20035
Tssr20036 2 127838814 to 127838836 22 + TSS region transcription start site region 20036
Acoxl 2 127838876 to 128123873 284997 + protein coding gene acyl-Coenzyme A oxidase-like
Gm22411 2 127891988 to 127892113 125 + miRNA gene predicted gene, 22411
Gm19501 2 127909591 to 127911285 1694 + unclassified gene predicted gene, 19501
0610042E11Rik 2 127920241 to 127922792 2551 unclassified gene RIKEN cDNA 0610042E11 gene
Tssr26148 2 127975630 to 127975653 23 - TSS region transcription start site region 26148
Tssr20037 2 128015183 to 128015187 4 + TSS region transcription start site region 20037
Tssr26149 2 128054962 to 128054967 5 - TSS region transcription start site region 26149
Tssr20038 2 128055171 to 128055184 13 + TSS region transcription start site region 20038
Tssr20039 2 128055191 to 128055202 11 + TSS region transcription start site region 20039
Tssr20040 2 128063100 to 128063109 9 + TSS region transcription start site region 20040
Tssr20041 2 128063121 to 128063139 18 + TSS region transcription start site region 20041
Gm23101 2 128089924 to 128090060 136 + snRNA gene predicted gene, 23101
Tssr638 2 128114376 to 128114379 3 + TSS region transcription start site region 638
D2Mit487 2 128115674 to 128115768 94 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 487
Gm39926 2 128122229 to 128126230 4001 - lncRNA gene predicted gene, 39926
Cpgi12233 2 128122856 to 128123217 361 CpG island CpG island 12233
Cpgi12234 2 128123540 to 128123956 416 CpG island CpG island 12234
Cpgi12235 2 128125028 to 128128258 3230 CpG island CpG island 12235
Tssr20042 2 128126030 to 128126056 26 + TSS region transcription start site region 20042
Bcl2l11 2 128126038 to 128162547 36509 + protein coding gene BCL2-like 11 (apoptosis facilitator)
Tssr26150 2 128127400 to 128127412 12 - TSS region transcription start site region 26150
Tssr20043 2 128127558 to 128127572 14 + TSS region transcription start site region 20043
Tssr20044 2 128127587 to 128127643 56 + TSS region transcription start site region 20044
Tssr26151 2 128128024 to 128128032 8 - TSS region transcription start site region 26151
Tssr20045 2 128128111 to 128128124 13 + TSS region transcription start site region 20045
Tssr20046 2 128128125 to 128128152 27 + TSS region transcription start site region 20046
Tssr20047 2 128128717 to 128128735 18 + TSS region transcription start site region 20047
Tssr20048 2 128132618 to 128132622 4 + TSS region transcription start site region 20048
Tssr20049 2 128158691 to 128158697 6 + TSS region transcription start site region 20049
Tssr639 2 128159264 to 128159269 5 + TSS region transcription start site region 639
Tssr20050 2 128159285 to 128159295 10 + TSS region transcription start site region 20050
Tssr20051 2 128169750 to 128169759 9 + TSS region transcription start site region 20051
Tssr26152 2 128179148 to 128179172 24 - TSS region transcription start site region 26152
Gm14009 2 128189987 to 128204634 14647 + lincRNA gene predicted gene 14009
Tssr20052 2 128190429 to 128190461 32 + TSS region transcription start site region 20052
Tssr20053 2 128204258 to 128204265 7 + TSS region transcription start site region 20053
Tssr640 2 128204292 to 128204310 18 + TSS region transcription start site region 640
Tssr20054 2 128204332 to 128204347 15 + TSS region transcription start site region 20054
Gm14012 2 128237693 to 128239643 1950 - lincRNA gene predicted gene 14012
Tssr26153 2 128257705 to 128257743 38 - TSS region transcription start site region 26153
Tssr26154 2 128294999 to 128295008 9 - TSS region transcription start site region 26154
Tssr26155 2 128295035 to 128295044 9 - TSS region transcription start site region 26155
Morrbid 2 128298663 to 128429351 130688 - lincRNA gene myeloid RNA regulator of BCL2L11 induced cell death
Tssr26156 2 128306592 to 128306605 13 - TSS region transcription start site region 26156
Tssr641 2 128306973 to 128306982 9 + TSS region transcription start site region 641
Tssr642 2 128307005 to 128307010 5 + TSS region transcription start site region 642
Tssr26157 2 128318879 to 128318889 10 - TSS region transcription start site region 26157
Tssr643 2 128319211 to 128319243 32 + TSS region transcription start site region 643
Hrq1 2 128331784 to 128331901 117 QTL heart rate QTL 1
D2Mit304 2 128331784 to 128331901 117 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 304
Skmw9 2 128331784 to 128331901 117 QTL skeletal muscle weight 9
Pcfm2 2 128331784 to 128331901 117 QTL periosteal circumference and femur length 2
Lgth2 2 128331784 to 128331901 117 QTL body length 2
Gnf4 2 128331784 to 132872237 4540453 QTL growth and fatness 4
D2Dcr73 2 128331811 to 128331905 94 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 73
Tssr26158 2 128339489 to 128339491 2 - TSS region transcription start site region 26158
Tssr20055 2 128339901 to 128339914 13 + TSS region transcription start site region 20055
Tssr20056 2 128364416 to 128364439 23 + TSS region transcription start site region 20056
Tssr26159 2 128382607 to 128382621 14 - TSS region transcription start site region 26159
Tssr26160 2 128405259 to 128405270 11 - TSS region transcription start site region 26160
Tssr644 2 128406473 to 128406477 4 - TSS region transcription start site region 644
Tssr26161 2 128406636 to 128406640 4 - TSS region transcription start site region 26161
Tssr26162 2 128422218 to 128422241 23 - TSS region transcription start site region 26162
Gm14010 2 128423654 to 128424565 911 + lincRNA gene predicted gene 14010
Tssr20057 2 128428327 to 128428351 24 + TSS region transcription start site region 20057
Tssr645 2 128428916 to 128428933 17 - TSS region transcription start site region 645
Tssr26163 2 128429073 to 128429091 18 - TSS region transcription start site region 26163
Tssr26164 2 128429141 to 128429146 5 - TSS region transcription start site region 26164
Tssr26165 2 128429157 to 128429166 9 - TSS region transcription start site region 26165
Tssr26166 2 128429177 to 128429226 49 - TSS region transcription start site region 26166
Tssr26167 2 128429236 to 128429259 23 - TSS region transcription start site region 26167
Tssr26168 2 128429317 to 128429362 45 - TSS region transcription start site region 26168
Tssr26169 2 128429385 to 128429399 14 - TSS region transcription start site region 26169
Tssr646 2 128429480 to 128429490 10 + TSS region transcription start site region 646
Tssr647 2 128429547 to 128429579 32 + TSS region transcription start site region 647
Gm36154 2 128430437 to 128466515 36078 - lncRNA gene predicted gene, 36154
Gm29010 2 128433723 to 128460051 26328 + lincRNA gene predicted gene 29010
Tssr26170 2 128466468 to 128466478 10 - TSS region transcription start site region 26170
Tssr26171 2 128467513 to 128467522 9 - TSS region transcription start site region 26171
Tssr26172 2 128467525 to 128467531 6 - TSS region transcription start site region 26172
Gm39928 2 128490600 to 128549717 59117 - lncRNA gene predicted gene, 39928
Gm39927 2 128520024 to 128521888 1864 - lncRNA gene predicted gene, 39927
Gm14006 2 128557254 to 128558234 980 - pseudogene predicted gene 14006
Gm36203 2 128570156 to 128591162 21006 - lncRNA gene predicted gene, 36203
Gm14008 2 128587895 to 128588168 273 - pseudogene predicted gene 14008
Tssr20058 2 128591205 to 128591223 18 + TSS region transcription start site region 20058
Spdye4c 2 128591209 to 128598464 7255 + protein coding gene speedy/RINGO cell cycle regulator family, member E4C
Tssr20059 2 128591233 to 128591244 11 + TSS region transcription start site region 20059
Gm39929 2 128601515 to 128605384 3869 - lincRNA gene predicted gene, 39929
Gm14007 2 128606985 to 128607194 209 + pseudogene predicted gene 14007
Anapc1 2 128610104 to 128687391 77287 - protein coding gene anaphase promoting complex subunit 1
Cpgi12236 2 128686650 to 128687552 902 CpG island CpG island 12236
Tssr26173 2 128687357 to 128687396 39 - TSS region transcription start site region 26173
Tssr26174 2 128687400 to 128687411 11 - TSS region transcription start site region 26174
Gm39931 2 128687756 to 128698922 11166 - lncRNA gene predicted gene, 39931
Cpgi12237 2 128698725 to 128699612 887 CpG island CpG island 12237
Tssr20060 2 128698822 to 128698833 11 + TSS region transcription start site region 20060
Tssr20061 2 128698865 to 128698897 32 + TSS region transcription start site region 20061
Tssr20062 2 128698903 to 128698924 21 + TSS region transcription start site region 20062
Mertk 2 128698956 to 128802894 103938 + protein coding gene MER proto-oncogene tyrosine kinase
Tssr20063 2 128704801 to 128704819 18 + TSS region transcription start site region 20063
Tssr20064 2 128708716 to 128708734 18 + TSS region transcription start site region 20064
Tssr20065 2 128708756 to 128708783 27 + TSS region transcription start site region 20065
D2Mit305.1 2 128709021 to 128709130 109 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 305.1
Tssr20066 2 128709055 to 128709065 10 + TSS region transcription start site region 20066
Tssr20067 2 128709091 to 128709107 16 + TSS region transcription start site region 20067
D2Mit305 2 128709108 to 128709243 135 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 305
Chab1 2 128709108 to 128709243 135 QTL cholesterol absorption 1
Tssr20068 2 128729291 to 128729305 14 + TSS region transcription start site region 20068
Tssr20069 2 128738266 to 128738277 11 + TSS region transcription start site region 20069
Gm14011 2 128751271 to 128753705 2434 - antisense lncRNA gene predicted gene 14011
Tssr648 2 128751901 to 128751934 33 + TSS region transcription start site region 648
Tssr20070 2 128761814 to 128761818 4 + TSS region transcription start site region 20070
Tssr20071 2 128769218 to 128769224 6 + TSS region transcription start site region 20071
Gm23172 2 128780376 to 128780499 123 + snoRNA gene predicted gene, 23172
D2Mit447 2 128781466 to 128781606 140 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 447
Nsv1 2 128781466 to 128781606 140 QTL Neuroadapted Sindbis viral RNA level 1