Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:127188260-127538271

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1810024B03Rik 2 127186355 to 127208280 21925 - protein coding gene RIKEN cDNA 1810024B03 gene
Tssr26100 2 127188788 to 127188792 4 - TSS region transcription start site region 26100
Cpgi12216 2 127208125 to 127208844 719 CpG island CpG island 12216
Tssr26101 2 127208244 to 127208273 29 - TSS region transcription start site region 26101
Tssr26102 2 127208274 to 127208289 15 - TSS region transcription start site region 26102
Tssr19993 2 127208358 to 127208444 86 + TSS region transcription start site region 19993
Snrnp200 2 127208386 to 127240451 32065 + protein coding gene small nuclear ribonucleoprotein 200 (U5)
Tssr19994 2 127208464 to 127208475 11 + TSS region transcription start site region 19994
Tssr19995 2 127209078 to 127209103 25 + TSS region transcription start site region 19995
Tssr19996 2 127221848 to 127221869 21 + TSS region transcription start site region 19996
Tssr19997 2 127238417 to 127238440 23 + TSS region transcription start site region 19997
Ciao1 2 127240938 to 127247816 6878 - protein coding gene cytosolic iron-sulfur protein assembly 1
Cpgi12217 2 127247370 to 127248853 1483 CpG island CpG island 12217
Tssr26103 2 127247685 to 127247702 17 - TSS region transcription start site region 26103
Tssr26104 2 127247704 to 127247765 61 - TSS region transcription start site region 26104
Tssr26105 2 127247768 to 127247780 12 - TSS region transcription start site region 26105
Tssr19998 2 127247939 to 127247997 58 + TSS region transcription start site region 19998
Tmem127 2 127247975 to 127260764 12789 + protein coding gene transmembrane protein 127
Tssr19999 2 127247998 to 127248037 39 + TSS region transcription start site region 19999
Tssr20000 2 127248053 to 127248064 11 + TSS region transcription start site region 20000
Tssr20001 2 127258609 to 127258627 18 + TSS region transcription start site region 20001
Tssr20002 2 127262114 to 127262120 6 + TSS region transcription start site region 20002
Gm10766 2 127269449 to 127270054 605 - protein coding gene predicted gene 10766
Cpgi12218 2 127269672 to 127271130 1458 CpG island CpG island 12218
Tssr20003 2 127270208 to 127270271 63 + TSS region transcription start site region 20003
Stard7 2 127270218 to 127298932 28714 + protein coding gene START domain containing 7
Tssr20004 2 127270694 to 127270747 53 + TSS region transcription start site region 20004
Tssr20005 2 127270757 to 127270774 17 + TSS region transcription start site region 20005
Tssr26106 2 127272753 to 127272757 4 - TSS region transcription start site region 26106
Tssr20006 2 127277683 to 127277687 4 + TSS region transcription start site region 20006
Tssr26107 2 127277788 to 127277789 1 - TSS region transcription start site region 26107
Tssr636 2 127277932 to 127277941 9 + TSS region transcription start site region 636
Tssr26108 2 127300841 to 127300847 6 - TSS region transcription start site region 26108
Tssr26109 2 127302021 to 127302051 30 - TSS region transcription start site region 26109
Tssr26110 2 127314514 to 127314523 9 - TSS region transcription start site region 26110
Tssr26111 2 127314557 to 127314565 8 - TSS region transcription start site region 26111
Tssr26112 2 127315299 to 127315304 5 - TSS region transcription start site region 26112
Tssr26113 2 127318226 to 127318230 4 - TSS region transcription start site region 26113
Tssr26114 2 127319160 to 127319183 23 - TSS region transcription start site region 26114
Gm46762 2 127321665 to 127335551 13886 - lncRNA gene predicted gene, 46762
Tssr20007 2 127333499 to 127333510 11 + TSS region transcription start site region 20007
Tssr26115 2 127334040 to 127334055 15 - TSS region transcription start site region 26115
Cpgi12219 2 127335776 to 127337043 1267 CpG island CpG island 12219
Tssr26116 2 127335861 to 127335879 18 - TSS region transcription start site region 26116
Tssr637 2 127336036 to 127336046 10 + TSS region transcription start site region 637
Tssr20008 2 127336152 to 127336166 14 + TSS region transcription start site region 20008
Dusp2 2 127336159 to 127338376 2217 + protein coding gene dual specificity phosphatase 2
Tssr20009 2 127337554 to 127337557 3 + TSS region transcription start site region 20009
Tssr20010 2 127337721 to 127337730 9 + TSS region transcription start site region 20010
Tssr26117 2 127337768 to 127337793 25 - TSS region transcription start site region 26117
Tssr20011 2 127337901 to 127337920 19 + TSS region transcription start site region 20011
Tssr20012 2 127337953 to 127337978 25 + TSS region transcription start site region 20012
Astl 2 127338639 to 127357651 19012 + protein coding gene astacin-like metalloendopeptidase (M12 family)
Tssr20013 2 127357162 to 127357165 3 + TSS region transcription start site region 20013
Cpgi12220 2 127362572 to 127364179 1607 CpG island CpG island 12220
Tssr20014 2 127362811 to 127362818 7 + TSS region transcription start site region 20014
Tssr20015 2 127363169 to 127363193 24 + TSS region transcription start site region 20015
Tssr20016 2 127363197 to 127363217 20 + TSS region transcription start site region 20016
Tssr20017 2 127363224 to 127363242 18 + TSS region transcription start site region 20017
Tssr20018 2 127363260 to 127363271 11 + TSS region transcription start site region 20018
Adra2b 2 127363286 to 127367221 3935 + protein coding gene adrenergic receptor, alpha 2b
Tssr20019 2 127365362 to 127365366 4 + TSS region transcription start site region 20019
Gm39923 2 127380976 to 127390611 9635 + lncRNA gene predicted gene, 39923
Cpgi12221 2 127425004 to 127425331 327 CpG island CpG island 12221
Tssr20020 2 127425155 to 127425194 39 + TSS region transcription start site region 20020
Gpat2 2 127425199 to 127436092 10893 + protein coding gene glycerol-3-phosphate acyltransferase 2, mitochondrial
Gm39924 2 127428054 to 127435068 7014 - lncRNA gene predicted gene, 39924
Fahd2a 2 127436215 to 127444565 8350 - protein coding gene fumarylacetoacetate hydrolase domain containing 2A
Cpgi12222 2 127444203 to 127444753 550 CpG island CpG island 12222
Tssr26118 2 127444524 to 127444572 48 - TSS region transcription start site region 26118
Kcnip3 2 127456498 to 127522094 65596 - protein coding gene Kv channel interacting protein 3, calsenilin
Tssr26119 2 127458210 to 127458232 22 - TSS region transcription start site region 26119
Tssr26120 2 127458307 to 127458332 25 - TSS region transcription start site region 26120
Tssr20021 2 127462990 to 127462994 4 + TSS region transcription start site region 20021
Gm22613 2 127473017 to 127473308 291 - unclassified non-coding RNA gene predicted gene, 22613
Cpgi12223 2 127481745 to 127483422 1677 CpG island CpG island 12223
Tssr26121 2 127482541 to 127482577 36 - TSS region transcription start site region 26121
Tssr20022 2 127483627 to 127483633 6 + TSS region transcription start site region 20022
Cpgi12224 2 127484282 to 127484752 470 CpG island CpG island 12224
Tssr26122 2 127511109 to 127511120 11 - TSS region transcription start site region 26122
Tssr26123 2 127511135 to 127511140 5 - TSS region transcription start site region 26123
Tssr20023 2 127514743 to 127514756 13 + TSS region transcription start site region 20023
Tssr26124 2 127521273 to 127521282 9 - TSS region transcription start site region 26124
Tssr26125 2 127521306 to 127521322 16 - TSS region transcription start site region 26125
Tssr26126 2 127521331 to 127521357 26 - TSS region transcription start site region 26126
Tssr26127 2 127521358 to 127521375 17 - TSS region transcription start site region 26127
Gm35478 2 127521561 to 127531815 10254 + lncRNA gene predicted gene, 35478
Prom2 2 127526953 to 127541417 14464 - protein coding gene prominin 2