Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:126607738-128687887

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353 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Actre3 2 112194642 to 128331901 16137259 QTL activity response to ethanol 3
Actre4 2 112194642 to 128331901 16137259 QTL activity response to ethanol 4
Hdc 2 126593667 to 126619299 25632 - protein coding gene histidine decarboxylase
Tssr19958 2 126607728 to 126607739 11 + TSS region transcription start site region 19958
Tssr19959 2 126607752 to 126607807 55 + TSS region transcription start site region 19959
D2Mit256 2 126616674 to 126616816 142 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 256
Tssr26055 2 126618655 to 126618671 16 - TSS region transcription start site region 26055
Gabpb1 2 126628907 to 126676551 47644 - protein coding gene GA repeat binding protein, beta 1
Gm23753 2 126634539 to 126634687 148 - snRNA gene predicted gene, 23753
Tssr19960 2 126637095 to 126637098 3 + TSS region transcription start site region 19960
Gm18720 2 126643141 to 126645962 2821 - pseudogene predicted gene, 18720
A630026N12Rik 2 126669927 to 126672196 2269 unclassified gene RIKEN cDNA A630026N12 gene
Tssr26056 2 126670675 to 126670680 5 - TSS region transcription start site region 26056
Tssr19961 2 126673596 to 126673606 10 + TSS region transcription start site region 19961
Tssr19962 2 126673649 to 126673659 10 + TSS region transcription start site region 19962
Cpgi12207 2 126674544 to 126676256 1712 CpG island CpG island 12207
Tssr19963 2 126674642 to 126674646 4 + TSS region transcription start site region 19963
Tssr26057 2 126675195 to 126675217 22 - TSS region transcription start site region 26057
Tssr26058 2 126675224 to 126675268 44 - TSS region transcription start site region 26058
Tssr19964 2 126675297 to 126675347 50 + TSS region transcription start site region 19964
Tssr26059 2 126675448 to 126675460 12 - TSS region transcription start site region 26059
Tssr26060 2 126675461 to 126675509 48 - TSS region transcription start site region 26060
Tssr26061 2 126675517 to 126675532 15 - TSS region transcription start site region 26061
Tssr26062 2 126675538 to 126675572 34 - TSS region transcription start site region 26062
Tssr19965 2 126675898 to 126675910 12 + TSS region transcription start site region 19965
Gm27003 2 126675916 to 126683805 7889 + antisense lncRNA gene predicted gene, 27003
Tssr26063 2 126676063 to 126676096 33 - TSS region transcription start site region 26063
Tssr26064 2 126676111 to 126676140 29 - TSS region transcription start site region 26064
Cpgi12208 2 126706996 to 126707780 784 CpG island CpG island 12208
Tssr19966 2 126707183 to 126707235 52 + TSS region transcription start site region 19966
Tssr19967 2 126707319 to 126707411 92 + TSS region transcription start site region 19967
Usp8 2 126707328 to 126759297 51969 + protein coding gene ubiquitin specific peptidase 8
Tssr19968 2 126707412 to 126707423 11 + TSS region transcription start site region 19968
Gm10774 2 126709354 to 126709557 203 - pseudogene predicted pseudogene 10774
Tssr19969 2 126718041 to 126718058 17 + TSS region transcription start site region 19969
Tssr19970 2 126735972 to 126735978 6 + TSS region transcription start site region 19970
Tssr19971 2 126738008 to 126738047 39 + TSS region transcription start site region 19971
Tssr19972 2 126758696 to 126758732 36 + TSS region transcription start site region 19972
Usp50 2 126761050 to 126783460 22410 - protein coding gene ubiquitin specific peptidase 50
Tssr26065 2 126783416 to 126783452 36 - TSS region transcription start site region 26065
Trpm7 2 126791565 to 126876230 84665 - protein coding gene transient receptor potential cation channel, subfamily M, member 7
Tssr26066 2 126797810 to 126797826 16 - TSS region transcription start site region 26066
Tssr26067 2 126810238 to 126810241 3 - TSS region transcription start site region 26067
Tssr26068 2 126863270 to 126863274 4 - TSS region transcription start site region 26068
Gm14212 2 126864503 to 126865328 825 + pseudogene predicted gene 14212
Cpgi12209 2 126875323 to 126876603 1280 CpG island CpG island 12209
Tssr26069 2 126876149 to 126876171 22 - TSS region transcription start site region 26069
Tssr26070 2 126876179 to 126876205 26 - TSS region transcription start site region 26070
Tssr26071 2 126876209 to 126876267 58 - TSS region transcription start site region 26071
Gm19213 2 126881642 to 126882276 634 + pseudogene predicted gene, 19213
Sppl2a 2 126890391 to 126933235 42844 - protein coding gene signal peptide peptidase like 2A
Tssr26072 2 126890702 to 126890725 23 - TSS region transcription start site region 26072
Tssr26073 2 126890877 to 126890896 19 - TSS region transcription start site region 26073
Tssr26074 2 126890955 to 126890972 17 - TSS region transcription start site region 26074
Tssr26075 2 126890976 to 126890987 11 - TSS region transcription start site region 26075
Tssr26076 2 126892383 to 126892408 25 - TSS region transcription start site region 26076
Tssr26077 2 126894102 to 126894105 3 - TSS region transcription start site region 26077
Tssr26078 2 126897679 to 126897680 1 - TSS region transcription start site region 26078
Mir3473g 2 126902250 to 126902385 135 - miRNA gene microRNA 3473g
Gm46761 2 126909842 to 126910799 957 + pseudogene predicted gene, 46761
Tssr26079 2 126910366 to 126910387 21 - TSS region transcription start site region 26079
Tssr19973 2 126910374 to 126910376 2 + TSS region transcription start site region 19973
Tssr26080 2 126913103 to 126913122 19 - TSS region transcription start site region 26080
Tssr26081 2 126925804 to 126925815 11 - TSS region transcription start site region 26081
Tssr26082 2 126925827 to 126925838 11 - TSS region transcription start site region 26082
Tssr26083 2 126926845 to 126926865 20 - TSS region transcription start site region 26083
Tssr19974 2 126929025 to 126929030 5 + TSS region transcription start site region 19974
Tssr26084 2 126931901 to 126931906 5 - TSS region transcription start site region 26084
Cpgi12210 2 126932767 to 126933404 637 CpG island CpG island 12210
Tssr26085 2 126932993 to 126933090 97 - TSS region transcription start site region 26085
Tssr26086 2 126933122 to 126933133 11 - TSS region transcription start site region 26086
Tssr26087 2 126933153 to 126933164 11 - TSS region transcription start site region 26087
Tssr26088 2 126933215 to 126933227 12 - TSS region transcription start site region 26088
Tssr26089 2 126933229 to 126933241 12 - TSS region transcription start site region 26089
Tssr26090 2 126933867 to 126933880 13 - TSS region transcription start site region 26090
Tssr26091 2 126941988 to 126941993 5 - TSS region transcription start site region 26091
Cpgi12211 2 127004541 to 127004766 225 CpG island CpG island 12211
Cpgi12212 2 127008542 to 127009085 543 CpG island CpG island 12212
Tssr19975 2 127008711 to 127008756 45 + TSS region transcription start site region 19975
Ap4e1 2 127008717 to 127067909 59192 + protein coding gene adaptor-related protein complex AP-4, epsilon 1
Gm24081 2 127040561 to 127040685 124 + miRNA gene predicted gene, 24081
Cpgi12213 2 127070488 to 127070876 388 CpG island CpG island 12213
Tssr19976 2 127070646 to 127070709 63 + TSS region transcription start site region 19976
Blvra 2 127070665 to 127097084 26419 + protein coding gene biliverdin reductase A
Tssr19977 2 127078920 to 127078925 5 + TSS region transcription start site region 19977
Tssr19978 2 127080192 to 127080211 19 + TSS region transcription start site region 19978
Tssr19979 2 127080237 to 127080248 11 + TSS region transcription start site region 19979
Tssr19980 2 127080252 to 127080262 10 + TSS region transcription start site region 19980
Tssr19981 2 127080469 to 127080497 28 + TSS region transcription start site region 19981
Tssr19982 2 127080511 to 127080530 19 + TSS region transcription start site region 19982
Tssr19983 2 127080569 to 127080580 11 + TSS region transcription start site region 19983
Tssr19984 2 127081556 to 127081560 4 + TSS region transcription start site region 19984
Tssr19985 2 127083382 to 127083398 16 + TSS region transcription start site region 19985
Tssr19986 2 127086454 to 127086490 36 + TSS region transcription start site region 19986
Tssr19987 2 127087489 to 127087497 8 + TSS region transcription start site region 19987
Gm31414 2 127092320 to 127094324 2004 - pseudogene predicted gene, 31414
Gm39922 2 127098657 to 127103693 5036 + lncRNA gene predicted gene, 39922
Ncaph 2 127103809 to 127133954 30145 - protein coding gene non-SMC condensin I complex, subunit H
Tssr26092 2 127124950 to 127124966 16 - TSS region transcription start site region 26092
Cpgi12214 2 127133396 to 127134198 802 CpG island CpG island 12214
Tssr26093 2 127133884 to 127133908 24 - TSS region transcription start site region 26093
Tssr26094 2 127133909 to 127133952 43 - TSS region transcription start site region 26094
Tssr19988 2 127133949 to 127133960 11 + TSS region transcription start site region 19988
Tssr19989 2 127134008 to 127134028 20 + TSS region transcription start site region 19989
Gm35347 2 127134045 to 127138694 4649 + lncRNA gene predicted gene, 35347
Tssr19990 2 127135081 to 127135086 5 + TSS region transcription start site region 19990
Itpripl1 2 127138772 to 127143442 4670 - protein coding gene inositol 1,4,5-triphosphate receptor interacting protein-like 1
Tssr26095 2 127140964 to 127141004 40 - TSS region transcription start site region 26095
Tssr26096 2 127141200 to 127141246 46 - TSS region transcription start site region 26096
Tssr26097 2 127141579 to 127141589 10 - TSS region transcription start site region 26097
Tssr19991 2 127142737 to 127142749 12 + TSS region transcription start site region 19991
Cpgi12215 2 127143176 to 127143560 384 CpG island CpG island 12215
Tssr26098 2 127143313 to 127143330 17 - TSS region transcription start site region 26098
Tssr26099 2 127143410 to 127143479 69 - TSS region transcription start site region 26099
Tssr19992 2 127183017 to 127183068 51 + TSS region transcription start site region 19992
1810024B03Rik 2 127186355 to 127208280 21925 - protein coding gene RIKEN cDNA 1810024B03 gene
Tssr26100 2 127188788 to 127188792 4 - TSS region transcription start site region 26100
Cpgi12216 2 127208125 to 127208844 719 CpG island CpG island 12216
Tssr26101 2 127208244 to 127208273 29 - TSS region transcription start site region 26101
Tssr26102 2 127208274 to 127208289 15 - TSS region transcription start site region 26102
Tssr19993 2 127208358 to 127208444 86 + TSS region transcription start site region 19993
Snrnp200 2 127208386 to 127240451 32065 + protein coding gene small nuclear ribonucleoprotein 200 (U5)
Tssr19994 2 127208464 to 127208475 11 + TSS region transcription start site region 19994
Tssr19995 2 127209078 to 127209103 25 + TSS region transcription start site region 19995
Tssr19996 2 127221848 to 127221869 21 + TSS region transcription start site region 19996
Tssr19997 2 127238417 to 127238440 23 + TSS region transcription start site region 19997
Ciao1 2 127240938 to 127247816 6878 - protein coding gene cytosolic iron-sulfur protein assembly 1
Cpgi12217 2 127247370 to 127248853 1483 CpG island CpG island 12217
Tssr26103 2 127247685 to 127247702 17 - TSS region transcription start site region 26103
Tssr26104 2 127247704 to 127247765 61 - TSS region transcription start site region 26104
Tssr26105 2 127247768 to 127247780 12 - TSS region transcription start site region 26105
Tssr19998 2 127247939 to 127247997 58 + TSS region transcription start site region 19998
Tmem127 2 127247975 to 127260764 12789 + protein coding gene transmembrane protein 127
Tssr19999 2 127247998 to 127248037 39 + TSS region transcription start site region 19999
Tssr20000 2 127248053 to 127248064 11 + TSS region transcription start site region 20000
Tssr20001 2 127258609 to 127258627 18 + TSS region transcription start site region 20001
Tssr20002 2 127262114 to 127262120 6 + TSS region transcription start site region 20002
Gm10766 2 127269449 to 127270054 605 - protein coding gene predicted gene 10766
Cpgi12218 2 127269672 to 127271130 1458 CpG island CpG island 12218
Tssr20003 2 127270208 to 127270271 63 + TSS region transcription start site region 20003
Stard7 2 127270218 to 127298932 28714 + protein coding gene START domain containing 7
Tssr20004 2 127270694 to 127270747 53 + TSS region transcription start site region 20004
Tssr20005 2 127270757 to 127270774 17 + TSS region transcription start site region 20005
Tssr26106 2 127272753 to 127272757 4 - TSS region transcription start site region 26106
Tssr20006 2 127277683 to 127277687 4 + TSS region transcription start site region 20006
Tssr26107 2 127277788 to 127277789 1 - TSS region transcription start site region 26107
Tssr636 2 127277932 to 127277941 9 + TSS region transcription start site region 636
Tssr26108 2 127300841 to 127300847 6 - TSS region transcription start site region 26108
Tssr26109 2 127302021 to 127302051 30 - TSS region transcription start site region 26109
Tssr26110 2 127314514 to 127314523 9 - TSS region transcription start site region 26110
Tssr26111 2 127314557 to 127314565 8 - TSS region transcription start site region 26111
Tssr26112 2 127315299 to 127315304 5 - TSS region transcription start site region 26112
Tssr26113 2 127318226 to 127318230 4 - TSS region transcription start site region 26113
Tssr26114 2 127319160 to 127319183 23 - TSS region transcription start site region 26114
Gm46762 2 127321665 to 127335551 13886 - lncRNA gene predicted gene, 46762
Tssr20007 2 127333499 to 127333510 11 + TSS region transcription start site region 20007
Tssr26115 2 127334040 to 127334055 15 - TSS region transcription start site region 26115
Cpgi12219 2 127335776 to 127337043 1267 CpG island CpG island 12219
Tssr26116 2 127335861 to 127335879 18 - TSS region transcription start site region 26116
Tssr637 2 127336036 to 127336046 10 + TSS region transcription start site region 637
Tssr20008 2 127336152 to 127336166 14 + TSS region transcription start site region 20008
Dusp2 2 127336159 to 127338376 2217 + protein coding gene dual specificity phosphatase 2
Tssr20009 2 127337554 to 127337557 3 + TSS region transcription start site region 20009
Tssr20010 2 127337721 to 127337730 9 + TSS region transcription start site region 20010
Tssr26117 2 127337768 to 127337793 25 - TSS region transcription start site region 26117
Tssr20011 2 127337901 to 127337920 19 + TSS region transcription start site region 20011
Tssr20012 2 127337953 to 127337978 25 + TSS region transcription start site region 20012
Astl 2 127338639 to 127357651 19012 + protein coding gene astacin-like metalloendopeptidase (M12 family)
Tssr20013 2 127357162 to 127357165 3 + TSS region transcription start site region 20013
Cpgi12220 2 127362572 to 127364179 1607 CpG island CpG island 12220
Tssr20014 2 127362811 to 127362818 7 + TSS region transcription start site region 20014
Tssr20015 2 127363169 to 127363193 24 + TSS region transcription start site region 20015
Tssr20016 2 127363197 to 127363217 20 + TSS region transcription start site region 20016
Tssr20017 2 127363224 to 127363242 18 + TSS region transcription start site region 20017
Tssr20018 2 127363260 to 127363271 11 + TSS region transcription start site region 20018
Adra2b 2 127363286 to 127367221 3935 + protein coding gene adrenergic receptor, alpha 2b
Tssr20019 2 127365362 to 127365366 4 + TSS region transcription start site region 20019
Gm39923 2 127380976 to 127390611 9635 + lncRNA gene predicted gene, 39923
Cpgi12221 2 127425004 to 127425331 327 CpG island CpG island 12221
Tssr20020 2 127425155 to 127425194 39 + TSS region transcription start site region 20020
Gpat2 2 127425199 to 127436092 10893 + protein coding gene glycerol-3-phosphate acyltransferase 2, mitochondrial
Gm39924 2 127428054 to 127435068 7014 - lncRNA gene predicted gene, 39924
Fahd2a 2 127436215 to 127444565 8350 - protein coding gene fumarylacetoacetate hydrolase domain containing 2A
Cpgi12222 2 127444203 to 127444753 550 CpG island CpG island 12222
Tssr26118 2 127444524 to 127444572 48 - TSS region transcription start site region 26118
Kcnip3 2 127456498 to 127522094 65596 - protein coding gene Kv channel interacting protein 3, calsenilin
Tssr26119 2 127458210 to 127458232 22 - TSS region transcription start site region 26119
Tssr26120 2 127458307 to 127458332 25 - TSS region transcription start site region 26120
Tssr20021 2 127462990 to 127462994 4 + TSS region transcription start site region 20021
Gm22613 2 127473017 to 127473308 291 - unclassified non-coding RNA gene predicted gene, 22613
Cpgi12223 2 127481745 to 127483422 1677 CpG island CpG island 12223
Tssr26121 2 127482541 to 127482577 36 - TSS region transcription start site region 26121
Tssr20022 2 127483627 to 127483633 6 + TSS region transcription start site region 20022
Cpgi12224 2 127484282 to 127484752 470 CpG island CpG island 12224
Tssr26122 2 127511109 to 127511120 11 - TSS region transcription start site region 26122
Tssr26123 2 127511135 to 127511140 5 - TSS region transcription start site region 26123
Tssr20023 2 127514743 to 127514756 13 + TSS region transcription start site region 20023
Tssr26124 2 127521273 to 127521282 9 - TSS region transcription start site region 26124
Tssr26125 2 127521306 to 127521322 16 - TSS region transcription start site region 26125
Tssr26126 2 127521331 to 127521357 26 - TSS region transcription start site region 26126