Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:125080594-125726485

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq7 2 118526291 to 125206952 6680661 QTL conditioned fear QTL 7
pta 2 119524913 to 125725738 6200825 heritable phenotypic marker persistent truncus arteriosus
Slc24a5 2 125068127 to 125088677 20550 + protein coding gene solute carrier family 24, member 5
Myef2 2 125084628 to 125123661 39033 - protein coding gene myelin basic protein expression factor 2, repressor
Tssr25995 2 125088671 to 125088678 7 - TSS region transcription start site region 25995
Tssr25996 2 125100888 to 125100892 4 - TSS region transcription start site region 25996
Gm22352 2 125105009 to 125105115 106 + snRNA gene predicted gene, 22352
Cpgi12191 2 125122884 to 125124127 1243 CpG island CpG island 12191
Tssr25997 2 125123581 to 125123617 36 - TSS region transcription start site region 25997
Tssr25998 2 125123618 to 125123648 30 - TSS region transcription start site region 25998
Gm46759 2 125123724 to 125126217 2493 + lncRNA gene predicted gene, 46759
Gm14004 2 125124356 to 125134327 9971 - unclassified non-coding RNA gene predicted gene 14004
Cpgi12192 2 125136263 to 125136772 509 CpG island CpG island 12192
Tssr19879 2 125136598 to 125136623 25 + TSS region transcription start site region 19879
Ctxn2 2 125136692 to 125147839 11147 + protein coding gene cortexin 2
Tssr19880 2 125136748 to 125136769 21 + TSS region transcription start site region 19880
Tssr19881 2 125151834 to 125151846 12 + TSS region transcription start site region 19881
Tssr19882 2 125152592 to 125152606 14 + TSS region transcription start site region 19882
Slc12a1 2 125152600 to 125230002 77402 + protein coding gene solute carrier family 12, member 1
Tssr19883 2 125154021 to 125154032 11 + TSS region transcription start site region 19883
Cpgi12193 2 125154157 to 125154404 247 CpG island CpG island 12193
Tssr19884 2 125158428 to 125158429 1 + TSS region transcription start site region 19884
Tssr19885 2 125158920 to 125158937 17 + TSS region transcription start site region 19885
Tssr19886 2 125161306 to 125161309 3 + TSS region transcription start site region 19886
Tssr19887 2 125162992 to 125163001 9 + TSS region transcription start site region 19887
Tssr19888 2 125164806 to 125164808 2 + TSS region transcription start site region 19888
Cpgi12194 2 125186321 to 125186536 215 CpG island CpG island 12194
Tssr19889 2 125188980 to 125188987 7 + TSS region transcription start site region 19889
Gm46760 2 125195148 to 125203407 8259 - lncRNA gene predicted gene, 46760
Gm14002 2 125207529 to 125217512 9983 - antisense lncRNA gene predicted gene 14002
Tssr19890 2 125218139 to 125218146 7 + TSS region transcription start site region 19890
Tssr19891 2 125229441 to 125229453 12 + TSS region transcription start site region 19891
Tssr19892 2 125229552 to 125229561 9 + TSS region transcription start site region 19892
Tssr19893 2 125235852 to 125235854 2 + TSS region transcription start site region 19893
Cpgi12195 2 125247102 to 125248138 1036 CpG island CpG island 12195
Dut 2 125247190 to 125258608 11418 + protein coding gene deoxyuridine triphosphatase
Tssr19894 2 125247226 to 125247287 61 + TSS region transcription start site region 19894
Tssr19895 2 125247709 to 125247743 34 + TSS region transcription start site region 19895
Tssr19896 2 125256434 to 125256445 11 + TSS region transcription start site region 19896
Tssr19897 2 125256470 to 125256476 6 + TSS region transcription start site region 19897
A530010F05Rik 2 125274564 to 125277172 2608 + antisense lncRNA gene RIKEN cDNA A530010F05 gene
Gm14003 2 125282688 to 125283978 1290 - lincRNA gene predicted gene 14003
Fbn1 2 125300594 to 125506485 205891 - protein coding gene fibrillin 1
Tssr25999 2 125301723 to 125301736 13 - TSS region transcription start site region 25999
D2Mit459 2 125365310 to 125365429 119 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 459
Tssr26000 2 125397811 to 125397842 31 - TSS region transcription start site region 26000
Gm9913 2 125505089 to 125507881 2792 + protein coding gene predicted gene 9913
Cpgi12196 2 125505221 to 125507031 1810 CpG island CpG island 12196
Tssr26001 2 125505937 to 125505944 7 - TSS region transcription start site region 26001
Tssr26002 2 125505957 to 125505977 20 - TSS region transcription start site region 26002
Tssr26003 2 125506023 to 125506047 24 - TSS region transcription start site region 26003
Tssr26004 2 125506052 to 125506084 32 - TSS region transcription start site region 26004
Tssr26005 2 125506395 to 125506408 13 - TSS region transcription start site region 26005
Tssr26006 2 125506419 to 125506445 26 - TSS region transcription start site region 26006
Cep152 2 125563088 to 125625113 62025 - protein coding gene centrosomal protein 152
Gm35029 2 125590246 to 125594940 4694 + lncRNA gene predicted gene, 35029
Tssr19898 2 125591641 to 125591656 15 + TSS region transcription start site region 19898
Gm34949 2 125596702 to 125598119 1417 + pseudogene predicted gene, 34949
Cpgi12197 2 125624773 to 125625392 619 CpG island CpG island 12197
Tssr26007 2 125625065 to 125625123 58 - TSS region transcription start site region 26007
Shc4 2 125627447 to 125724148 96701 - protein coding gene SHC (Src homology 2 domain containing) family, member 4
Cpgi12198 2 125660844 to 125661078 234 CpG island CpG island 12198
D2Mit105 2 125665713 to 125665820 107 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 105
Cpgi12199 2 125672655 to 125673710 1055 CpG island CpG island 12199
Tssr19899 2 125673077 to 125673133 56 + TSS region transcription start site region 19899
Eid1 2 125673095 to 125674785 1690 + protein coding gene EP300 interacting inhibitor of differentiation 1
Tssr19900 2 125673149 to 125673184 35 + TSS region transcription start site region 19900
Tssr19901 2 125673683 to 125673694 11 + TSS region transcription start site region 19901
Tssr19902 2 125674054 to 125674074 20 + TSS region transcription start site region 19902
Gm35231 2 125692933 to 125694813 1880 + lncRNA gene predicted gene, 35231
Cpgi12200 2 125723069 to 125723634 565 CpG island CpG island 12200
Tssr26008 2 125723524 to 125723537 13 - TSS region transcription start site region 26008
Tssr26009 2 125723657 to 125723691 34 - TSS region transcription start site region 26009
Tssr26010 2 125723707 to 125723723 16 - TSS region transcription start site region 26010
D2Mit398 2 125725594 to 125725738 144 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 398
D2Dcr70 2 125725636 to 125725735 99 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 70