Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:12279136-13569143

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Itga8 2 12106632 to 12301920 195288 - protein coding gene integrin alpha 8
Tssr16173 2 12300678 to 12300687 9 + TSS region transcription start site region 16173
Tssr16174 2 12300794 to 12300834 40 + TSS region transcription start site region 16174
Tssr16175 2 12301019 to 12301032 13 + TSS region transcription start site region 16175
Tssr22663 2 12301050 to 12301095 45 - TSS region transcription start site region 22663
Tssr16176 2 12301208 to 12301217 9 + TSS region transcription start site region 16176
Tssr16177 2 12301229 to 12301250 21 + TSS region transcription start site region 16177
E030013I19Rik 2 12301246 to 12312315 11069 + antisense lncRNA gene RIKEN cDNA E030013I19 gene
Tssr16178 2 12301255 to 12301266 11 + TSS region transcription start site region 16178
Tssr16179 2 12301303 to 12301313 10 + TSS region transcription start site region 16179
Cpgi11209 2 12301429 to 12302209 780 CpG island CpG island 11209
Tssr22664 2 12301894 to 12301903 9 - TSS region transcription start site region 22664
Tssr22665 2 12301914 to 12301922 8 - TSS region transcription start site region 22665
Tssr22666 2 12301934 to 12301987 53 - TSS region transcription start site region 22666
Tssr22667 2 12301988 to 12301991 3 - TSS region transcription start site region 22667
Tssr22668 2 12301996 to 12302005 9 - TSS region transcription start site region 22668
Mindy3 2 12347263 to 12419470 72207 - protein coding gene MINDY lysine 48 deubiquitinase 3
Gm37289 2 12357095 to 12358496 1401 - unclassified gene predicted gene, 37289
Gm37255 2 12372212 to 12375271 3059 - unclassified gene predicted gene, 37255
Gm38014 2 12389872 to 12392483 2611 - unclassified gene predicted gene, 38014
Cpgi11210 2 12418613 to 12419539 926 CpG island CpG island 11210
Tssr22669 2 12419387 to 12419399 12 - TSS region transcription start site region 22669
Tssr22670 2 12419401 to 12419419 18 - TSS region transcription start site region 22670
Tssr22671 2 12419427 to 12419448 21 - TSS region transcription start site region 22671
Tssr22672 2 12419456 to 12419474 18 - TSS region transcription start site region 22672
Gm13321 2 12421627 to 12422026 399 - pseudogene predicted gene 13321
D2Mit429 2 12474345 to 12474466 121 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 429
Gm37565 2 12697417 to 12706853 9436 + lincRNA gene predicted gene, 37565
Tssr22673 2 12877781 to 12877786 5 - TSS region transcription start site region 22673
Cpgi11211 2 12924007 to 12924274 267 CpG island CpG island 11211
Pter 2 12924041 to 13003455 79414 + protein coding gene phosphotriesterase related
Tssr16180 2 12924053 to 12924113 60 + TSS region transcription start site region 16180
Tssr16181 2 12924120 to 12924134 14 + TSS region transcription start site region 16181
Tssr16182 2 12924136 to 12924143 7 + TSS region transcription start site region 16182
Tssr16183 2 12938679 to 12938683 4 + TSS region transcription start site region 16183
Tssr22674 2 12979609 to 12979610 1 - TSS region transcription start site region 22674
C1ql3 2 13003457 to 13011806 8349 - protein coding gene C1q-like 3
Gm37824 2 13004365 to 13007600 3235 + unclassified gene predicted gene, 37824
Gm37811 2 13009886 to 13012486 2600 + unclassified gene predicted gene, 37811
Cpgi11212 2 13009906 to 13011728 1822 CpG island CpG island 11212
Tssr22675 2 13010815 to 13010864 49 - TSS region transcription start site region 22675
Tssr22676 2 13010899 to 13010919 20 - TSS region transcription start site region 22676
Tssr22677 2 13011039 to 13011048 9 - TSS region transcription start site region 22677
Tssr22678 2 13011074 to 13011107 33 - TSS region transcription start site region 22678
Tssr22679 2 13011566 to 13011577 11 - TSS region transcription start site region 22679
Tssr22680 2 13011600 to 13011629 29 - TSS region transcription start site region 22680
Tssr22681 2 13011630 to 13011657 27 - TSS region transcription start site region 22681
Tssr22682 2 13011672 to 13011686 14 - TSS region transcription start site region 22682
Tssr22683 2 13011756 to 13011778 22 - TSS region transcription start site region 22683
Gm37356 2 13012624 to 13014236 1612 + unclassified gene predicted gene, 37356
Gm37742 2 13036126 to 13040104 3978 + unclassified gene predicted gene, 37742
1700016C23Rik 2 13042600 to 13045492 2892 unclassified gene RIKEN cDNA 1700016C23 gene
Rsu1 2 13076967 to 13271416 194449 - protein coding gene Ras suppressor protein 1
Gm38156 2 13116176 to 13118435 2259 - unclassified gene predicted gene, 38156
D2Mit427 2 13122624 to 13122742 118 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 427
9330179A15Rik 2 13149538 to 13149961 423 unclassified gene RIKEN cDNA 9330179A15 gene
Tssr22684 2 13156694 to 13156727 33 - TSS region transcription start site region 22684
Gm37780 2 13161751 to 13163623 1872 - unclassified gene predicted gene, 37780
Tssr22685 2 13219056 to 13219071 15 - TSS region transcription start site region 22685
Tssr22686 2 13223333 to 13223334 1 - TSS region transcription start site region 22686
Tssr22687 2 13224351 to 13224370 19 - TSS region transcription start site region 22687
Tssr22688 2 13224707 to 13224723 16 - TSS region transcription start site region 22688
Gm27540 2 13226828 to 13227014 186 + unclassified non-coding RNA gene predicted gene, 27540
Gm37160 2 13238939 to 13240627 1688 - unclassified gene predicted gene, 37160
Tssr22689 2 13257911 to 13257917 6 - TSS region transcription start site region 22689
Cpgi11213 2 13271170 to 13271843 673 CpG island CpG island 11213
Tssr22690 2 13271268 to 13271348 80 - TSS region transcription start site region 22690
Tssr22691 2 13271419 to 13271437 18 - TSS region transcription start site region 22691
Tssr22692 2 13271438 to 13271446 8 - TSS region transcription start site region 22692
Gm13270 2 13271540 to 13310119 38579 + lncRNA gene predicted gene 13270
Tssr16184 2 13271579 to 13271630 51 + TSS region transcription start site region 16184
Cubn 2 13276338 to 13491813 215475 - protein coding gene cubilin (intrinsic factor-cobalamin receptor)
Tssr22693 2 13283265 to 13283273 8 - TSS region transcription start site region 22693
Tssr22694 2 13410800 to 13410805 5 - TSS region transcription start site region 22694
Tssr16185 2 13411015 to 13411019 4 + TSS region transcription start site region 16185
Tssr22695 2 13413584 to 13413597 13 - TSS region transcription start site region 22695
Tssr22696 2 13424752 to 13424763 11 - TSS region transcription start site region 22696
Tssr22697 2 13424768 to 13424785 17 - TSS region transcription start site region 22697
Tssr16186 2 13481070 to 13481101 31 + TSS region transcription start site region 16186
Tssr22698 2 13491847 to 13491890 43 - TSS region transcription start site region 22698
Tssr22699 2 13491891 to 13491896 5 - TSS region transcription start site region 22699
Tssr22700 2 13491900 to 13491940 40 - TSS region transcription start site region 22700
Tssr22701 2 13491953 to 13491958 5 - TSS region transcription start site region 22701
Tssr22702 2 13491960 to 13491974 14 - TSS region transcription start site region 22702
Tssr22703 2 13491977 to 13492025 48 - TSS region transcription start site region 22703
Tssr22704 2 13492034 to 13492046 12 - TSS region transcription start site region 22704
Tssr22705 2 13493651 to 13493657 6 - TSS region transcription start site region 22705
Tssr22706 2 13493660 to 13493670 10 - TSS region transcription start site region 22706
Tssr22707 2 13493674 to 13493690 16 - TSS region transcription start site region 22707
Tssr22708 2 13493695 to 13493705 10 - TSS region transcription start site region 22708
Trdmt1 2 13509014 to 13544668 35654 - protein coding gene tRNA aspartic acid methyltransferase 1
Cpgi11214 2 13544420 to 13544795 375 CpG island CpG island 11214
Tssr22709 2 13544651 to 13544673 22 - TSS region transcription start site region 22709
Gm9875 2 13558323 to 13571736 13413 + lncRNA gene predicted gene 9875
Tssr22710 2 13558505 to 13558512 7 - TSS region transcription start site region 22710