Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:122621754-129261762

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762 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Actre3 2 112194642 to 128331901 16137259 QTL activity response to ethanol 3
Actre4 2 112194642 to 128331901 16137259 QTL activity response to ethanol 4
Tbvq2 2 115600000 to 124900000 9300000 QTL trabecular bone volume QTL 2
Cfq7 2 118526291 to 125206952 6680661 QTL conditioned fear QTL 7
pta 2 119524913 to 125725738 6200825 heritable phenotypic marker persistent truncus arteriosus
Cpgi12184 2 122630500 to 122631814 1314 CpG island CpG island 12184
Tssr19851 2 122630599 to 122630676 77 + TSS region transcription start site region 19851
Spata5l1 2 122630625 to 122632930 2305 + protein coding gene spermatogenesis associated 5-like 1
Tssr19852 2 122631195 to 122631226 31 + TSS region transcription start site region 19852
Tssr19853 2 122636962 to 122636973 11 + TSS region transcription start site region 19853
AA467197 2 122636968 to 122641085 4117 + protein coding gene expressed sequence AA467197
Cpgi12185 2 122637574 to 122638029 455 CpG island CpG island 12185
Tssr19854 2 122637844 to 122637864 20 + TSS region transcription start site region 19854
Tssr19855 2 122637867 to 122637923 56 + TSS region transcription start site region 19855
Mir147 2 122640803 to 122640881 78 + miRNA gene microRNA 147
Tssr19856 2 122640867 to 122640890 23 + TSS region transcription start site region 19856
Slc30a4 2 122681233 to 122702663 21430 - protein coding gene solute carrier family 30 (zinc transporter), member 4
Cpgi12186 2 122701860 to 122703019 1159 CpG island CpG island 12186
Tssr25986 2 122702615 to 122702717 102 - TSS region transcription start site region 25986
Tssr25987 2 122702727 to 122702785 58 - TSS region transcription start site region 25987
4930417H01Rik 2 122702828 to 122721456 18628 + lncRNA gene RIKEN cDNA 4930417H01 gene
1700056I18Rik 2 122703539 to 122704106 567 unclassified gene RIKEN cDNA 1700056I18 gene
Tssr25988 2 122704092 to 122704129 37 - TSS region transcription start site region 25988
Tssr19857 2 122704217 to 122704224 7 + TSS region transcription start site region 19857
Tssr19858 2 122704231 to 122704247 16 + TSS region transcription start site region 19858
Tssr19859 2 122704252 to 122704262 10 + TSS region transcription start site region 19859
Bloc1s6os 2 122733290 to 122738362 5072 - antisense lncRNA gene biogenesis of lysosomal organelles complex-1, subunit 6, pallidin, opposite strand
Cpgi12187 2 122738230 to 122738961 731 CpG island CpG island 12187
Tssr25989 2 122738345 to 122738365 20 - TSS region transcription start site region 25989
Tssr19860 2 122738495 to 122738600 105 + TSS region transcription start site region 19860
Bloc1s6 2 122738503 to 122749475 10972 + protein coding gene biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
Tssr19861 2 122738607 to 122738616 9 + TSS region transcription start site region 19861
Tssr19862 2 122738622 to 122738627 5 + TSS region transcription start site region 19862
Tssr19863 2 122738644 to 122738653 9 + TSS region transcription start site region 19863
Tssr19864 2 122746062 to 122746066 4 + TSS region transcription start site region 19864
Cpgi12188 2 122765043 to 122765819 776 CpG island CpG island 12188
Sqor 2 122765237 to 122809569 44332 + protein coding gene sulfide quinone oxidoreductase
Tssr19865 2 122765356 to 122765374 18 + TSS region transcription start site region 19865
Tssr19866 2 122765377 to 122765404 27 + TSS region transcription start site region 19866
Tssr628 2 122771285 to 122771327 42 + TSS region transcription start site region 628
Tssr19867 2 122771689 to 122771702 13 + TSS region transcription start site region 19867
Tssr19868 2 122771710 to 122771719 9 + TSS region transcription start site region 19868
Tssr19869 2 122798172 to 122798192 20 + TSS region transcription start site region 19869
D2Dcr66 2 122826603 to 122826753 150 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 66
D2Mit397 2 122826607 to 122826753 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 397
D2Dcr67 2 122826626 to 122826745 119 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 67
D2Mit396 2 122826627 to 122826745 118 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 396
Tssr25990 2 122930187 to 122930195 8 - TSS region transcription start site region 25990
Gm34430 2 122930371 to 122931340 969 + lncRNA gene predicted gene, 34430
Gm13988 2 123273924 to 123274211 287 + pseudogene predicted gene 13988
D2Mit164 2 123390053 to 123390195 142 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 164
Otx2m2 2 123390053 to 148858457 25468404 QTL orthodenticle homolog 2 modifier 2
D2Dcr68 2 123390095 to 123390214 119 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 68
Pbrgcsf1 2 123391660 to 123391809 149 QTL peripheral blood stem cell response to granulocyte colony stimulating factor 1
D2Mit255 2 123391660 to 123391809 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 255
D2Mit277 2 123430095 to 123430371 276 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 277
Tssr629 2 123487613 to 123487620 7 - TSS region transcription start site region 629
Gm39919 2 123774494 to 123798418 23924 - lncRNA gene predicted gene, 39919
D2Mit446 2 124038907 to 124039028 121 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 446
D2Mit485 2 124069227 to 124069350 123 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 485
Cpgi12189 2 124089777 to 124091054 1277 CpG island CpG island 12189
Tssr19870 2 124089961 to 124090018 57 + TSS region transcription start site region 19870
Sema6d 2 124089969 to 124667770 577801 + protein coding gene sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
4930517E11Rik 2 124123636 to 124129956 6320 - lincRNA gene RIKEN cDNA 4930517E11 gene
Tssr630 2 124174431 to 124174433 2 + TSS region transcription start site region 630
4930583P06Rik 2 124217679 to 124222331 4652 - lincRNA gene RIKEN cDNA 4930583P06 gene
Tssr25991 2 124222355 to 124222375 20 - TSS region transcription start site region 25991
Bw25 2 124413756 to 124413756 0 QTL body weight QTL 25
Tssr25992 2 124490181 to 124490183 2 - TSS region transcription start site region 25992
Cpgi12190 2 124609682 to 124611058 1376 CpG island CpG island 12190
Tssr19871 2 124609881 to 124609904 23 + TSS region transcription start site region 19871
Tssr631 2 124610068 to 124610131 63 + TSS region transcription start site region 631
Tssr19872 2 124610278 to 124610285 7 + TSS region transcription start site region 19872
Tssr19873 2 124610422 to 124610436 14 + TSS region transcription start site region 19873
Tssr19874 2 124610592 to 124610613 21 + TSS region transcription start site region 19874
Tssr19875 2 124649342 to 124649348 6 + TSS region transcription start site region 19875
Gm34484 2 124705850 to 124720962 15112 - lncRNA gene predicted gene, 34484
Gm13994 2 124708655 to 124711083 2428 + lincRNA gene predicted gene 13994
Tssr25993 2 124711095 to 124711106 11 - TSS region transcription start site region 25993
Tssr25994 2 124711537 to 124711542 5 - TSS region transcription start site region 25994
D2Mit16a 2 124727634 to 124727860 226 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 16a
D2Mit16b 2 124727695 to 124727860 165 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 16b
D2Mit16.1 2 124727844 to 124727971 127 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 16.1
Gm39920 2 124730386 to 124788925 58539 - lncRNA gene predicted gene, 39920
D2Mit337 2 124751798 to 124751921 123 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 337
D2Dcr69 2 124815209 to 124815307 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 69
Tssr19876 2 125018893 to 125018895 2 + TSS region transcription start site region 19876
Tssr19877 2 125068118 to 125068133 15 + TSS region transcription start site region 19877
Slc24a5 2 125068127 to 125088677 20550 + protein coding gene solute carrier family 24, member 5
Tssr19878 2 125068148 to 125068163 15 + TSS region transcription start site region 19878
Myef2 2 125084628 to 125123661 39033 - protein coding gene myelin basic protein expression factor 2, repressor
Tssr25995 2 125088671 to 125088678 7 - TSS region transcription start site region 25995
Tssr25996 2 125100888 to 125100892 4 - TSS region transcription start site region 25996
Gm22352 2 125105009 to 125105115 106 + snRNA gene predicted gene, 22352
Cpgi12191 2 125122884 to 125124127 1243 CpG island CpG island 12191
Tssr25997 2 125123581 to 125123617 36 - TSS region transcription start site region 25997
Tssr25998 2 125123618 to 125123648 30 - TSS region transcription start site region 25998
Gm46759 2 125123724 to 125126217 2493 + lncRNA gene predicted gene, 46759
Gm14004 2 125124356 to 125134327 9971 - unclassified non-coding RNA gene predicted gene 14004
Cpgi12192 2 125136263 to 125136772 509 CpG island CpG island 12192
Tssr19879 2 125136598 to 125136623 25 + TSS region transcription start site region 19879
Ctxn2 2 125136692 to 125147839 11147 + protein coding gene cortexin 2
Tssr19880 2 125136748 to 125136769 21 + TSS region transcription start site region 19880
Tssr19881 2 125151834 to 125151846 12 + TSS region transcription start site region 19881
Tssr19882 2 125152592 to 125152606 14 + TSS region transcription start site region 19882
Slc12a1 2 125152600 to 125230002 77402 + protein coding gene solute carrier family 12, member 1
Tssr19883 2 125154021 to 125154032 11 + TSS region transcription start site region 19883
Cpgi12193 2 125154157 to 125154404 247 CpG island CpG island 12193
Tssr19884 2 125158428 to 125158429 1 + TSS region transcription start site region 19884
Tssr19885 2 125158920 to 125158937 17 + TSS region transcription start site region 19885
Tssr19886 2 125161306 to 125161309 3 + TSS region transcription start site region 19886
Tssr19887 2 125162992 to 125163001 9 + TSS region transcription start site region 19887
Tssr19888 2 125164806 to 125164808 2 + TSS region transcription start site region 19888
Cpgi12194 2 125186321 to 125186536 215 CpG island CpG island 12194
Tssr19889 2 125188980 to 125188987 7 + TSS region transcription start site region 19889
Gm46760 2 125195148 to 125203407 8259 - lncRNA gene predicted gene, 46760
Gm14002 2 125207529 to 125217512 9983 - antisense lncRNA gene predicted gene 14002
Tssr19890 2 125218139 to 125218146 7 + TSS region transcription start site region 19890
Tssr19891 2 125229441 to 125229453 12 + TSS region transcription start site region 19891
Tssr19892 2 125229552 to 125229561 9 + TSS region transcription start site region 19892
Tssr19893 2 125235852 to 125235854 2 + TSS region transcription start site region 19893
Cpgi12195 2 125247102 to 125248138 1036 CpG island CpG island 12195
Dut 2 125247190 to 125258608 11418 + protein coding gene deoxyuridine triphosphatase
Tssr19894 2 125247226 to 125247287 61 + TSS region transcription start site region 19894
Tssr19895 2 125247709 to 125247743 34 + TSS region transcription start site region 19895
Tssr19896 2 125256434 to 125256445 11 + TSS region transcription start site region 19896
Tssr19897 2 125256470 to 125256476 6 + TSS region transcription start site region 19897
A530010F05Rik 2 125274564 to 125277172 2608 + antisense lncRNA gene RIKEN cDNA A530010F05 gene
Gm14003 2 125282688 to 125283978 1290 - lincRNA gene predicted gene 14003
Fbn1 2 125300594 to 125506485 205891 - protein coding gene fibrillin 1
Tssr25999 2 125301723 to 125301736 13 - TSS region transcription start site region 25999
D2Mit459 2 125365310 to 125365429 119 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 459
Tssr26000 2 125397811 to 125397842 31 - TSS region transcription start site region 26000
Gm9913 2 125505089 to 125507881 2792 + protein coding gene predicted gene 9913
Cpgi12196 2 125505221 to 125507031 1810 CpG island CpG island 12196
Tssr26001 2 125505937 to 125505944 7 - TSS region transcription start site region 26001
Tssr26002 2 125505957 to 125505977 20 - TSS region transcription start site region 26002
Tssr26003 2 125506023 to 125506047 24 - TSS region transcription start site region 26003
Tssr26004 2 125506052 to 125506084 32 - TSS region transcription start site region 26004
Tssr26005 2 125506395 to 125506408 13 - TSS region transcription start site region 26005
Tssr26006 2 125506419 to 125506445 26 - TSS region transcription start site region 26006
Cep152 2 125563088 to 125625113 62025 - protein coding gene centrosomal protein 152
Gm35029 2 125590246 to 125594940 4694 + lncRNA gene predicted gene, 35029
Tssr19898 2 125591641 to 125591656 15 + TSS region transcription start site region 19898
Gm34949 2 125596702 to 125598119 1417 + pseudogene predicted gene, 34949
Cpgi12197 2 125624773 to 125625392 619 CpG island CpG island 12197
Tssr26007 2 125625065 to 125625123 58 - TSS region transcription start site region 26007
Shc4 2 125627447 to 125724148 96701 - protein coding gene SHC (Src homology 2 domain containing) family, member 4
Cpgi12198 2 125660844 to 125661078 234 CpG island CpG island 12198
D2Mit105 2 125665713 to 125665820 107 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 105
Cpgi12199 2 125672655 to 125673710 1055 CpG island CpG island 12199
Tssr19899 2 125673077 to 125673133 56 + TSS region transcription start site region 19899
Eid1 2 125673095 to 125674785 1690 + protein coding gene EP300 interacting inhibitor of differentiation 1
Tssr19900 2 125673149 to 125673184 35 + TSS region transcription start site region 19900
Tssr19901 2 125673683 to 125673694 11 + TSS region transcription start site region 19901
Tssr19902 2 125674054 to 125674074 20 + TSS region transcription start site region 19902
Gm35231 2 125692933 to 125694813 1880 + lncRNA gene predicted gene, 35231
Cpgi12200 2 125723069 to 125723634 565 CpG island CpG island 12200
Tssr26008 2 125723524 to 125723537 13 - TSS region transcription start site region 26008
Tssr26009 2 125723657 to 125723691 34 - TSS region transcription start site region 26009
Tssr26010 2 125723707 to 125723723 16 - TSS region transcription start site region 26010
D2Mit398 2 125725594 to 125725738 144 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 398
D2Dcr70 2 125725636 to 125725735 99 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 70
Cpgi12201 2 125731797 to 125732134 337 CpG island CpG island 12201
BC026863 2 125732165 to 125733495 1330 unclassified gene cDNA sequence BC026863
Secisbp2l 2 125736986 to 125782870 45884 - protein coding gene SECIS binding protein 2-like
Tssr26011 2 125737885 to 125737890 5 - TSS region transcription start site region 26011
Tssr26012 2 125760382 to 125760403 21 - TSS region transcription start site region 26012
Tssr26013 2 125767984 to 125767988 4 - TSS region transcription start site region 26013
D2Dcr71 2 125772560 to 125772658 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 71
Tssr26014 2 125773412 to 125773470 58 - TSS region transcription start site region 26014
Tssr26015 2 125775607 to 125775629 22 - TSS region transcription start site region 26015
Tssr26016 2 125780563 to 125780586 23 - TSS region transcription start site region 26016
Cpgi12202 2 125782353 to 125783061 708 CpG island CpG island 12202
Tssr26017 2 125782712 to 125782730 18 - TSS region transcription start site region 26017
Tssr26018 2 125782734 to 125782772 38 - TSS region transcription start site region 26018
Tssr26019 2 125782774 to 125782802 28 - TSS region transcription start site region 26019
Tssr26020 2 125782815 to 125782826 11 - TSS region transcription start site region 26020
Tssr26021 2 125782834 to 125782845 11 - TSS region transcription start site region 26021
Tssr26022 2 125788358 to 125788364 6 - TSS region transcription start site region 26022
Tssr26023 2 125789469 to 125789491 22 - TSS region transcription start site region 26023
Tssr19903 2 125791695 to 125791706 11 + TSS region transcription start site region 19903
Tssr19904 2 125791725 to 125791782 57 + TSS region transcription start site region 19904
Tssr19905 2 125796852 to 125796869 17 + TSS region transcription start site region 19905
Cops2 2 125830302 to 125859082 28780 - protein coding gene COP9 signalosome subunit 2
Tssr26024 2 125831345 to 125831349 4 - TSS region transcription start site region 26024
Tssr19906 2 125838443 to 125838463 20 + TSS region transcription start site region 19906
Tssr26025 2 125839466 to 125839493 27 - TSS region transcription start site region 26025
Cpgi12203 2 125858475 to 125859396 921 CpG island CpG island 12203
Tssr26026 2 125858985 to 125859027 42 - TSS region transcription start site region 26026
Galk2 2 125859109 to 125984298 125189 + protein coding gene galactokinase 2
Tssr19907 2 125859163 to 125859225 62 + TSS region transcription start site region 19907
Tssr26027 2 125859198 to 125859221 23 - TSS region transcription start site region 26027
Cpgi12204 2 125866129 to 125866441 312 CpG island CpG island 12204
Tssr19908 2 125866224 to 125866282 58 + TSS region transcription start site region 19908
Tssr19909 2 125866283 to 125866305 22 + TSS region transcription start site region 19909
Tssr19910 2 125866319 to 125866330 11 + TSS region transcription start site region 19910
Tssr19911 2 125893335 to 125893342 7 + TSS region transcription start site region 19911
Tssr19912 2 125893345 to 125893368 23 + TSS region transcription start site region 19912
Tssr19913 2 125893377 to 125893388 11 + TSS region transcription start site region 19913