Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:122387613-124587620

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm39918 2 122369242 to 122389004 19762 + lncRNA gene predicted gene, 39918
Tssr25968 2 122396215 to 122396217 2 - TSS region transcription start site region 25968
Tssr19847 2 122426432 to 122426461 29 + TSS region transcription start site region 19847
Slc28a2 2 122426477 to 122461137 34660 + protein coding gene solute carrier family 28 (sodium-coupled nucleoside transporter), member 2
Gm14086 2 122427194 to 122427469 275 + pseudogene predicted gene 14086
Bambi-ps1 2 122466935 to 122467526 591 - pseudogene BMP and activin membrane-bound inhibitor, pseudogene (Xenopus laevis)
Cpgi12182 2 122467152 to 122468198 1046 CpG island CpG island 12182
Tssr25969 2 122467724 to 122467750 26 - TSS region transcription start site region 25969
Tssr25970 2 122469131 to 122469138 7 - TSS region transcription start site region 25970
Gm14085 2 122484941 to 122528040 43099 + protein coding gene predicted gene 14085
Tssr19848 2 122561457 to 122561476 19 + TSS region transcription start site region 19848
Tssr25971 2 122562348 to 122562357 9 - TSS region transcription start site region 25971
Gm34325 2 122569693 to 122585020 15327 + lncRNA gene predicted gene, 34325
Gm17958 2 122570964 to 122571793 829 - pseudogene predicted gene, 17958
Tssr19849 2 122572149 to 122572157 8 + TSS region transcription start site region 19849
Gatm 2 122594473 to 122611277 16804 - protein coding gene glycine amidinotransferase (L-arginine:glycine amidinotransferase)
Tssr25972 2 122594905 to 122594913 8 - TSS region transcription start site region 25972
Tssr25973 2 122594981 to 122594989 8 - TSS region transcription start site region 25973
Tssr25974 2 122595124 to 122595142 18 - TSS region transcription start site region 25974
Tssr25975 2 122595206 to 122595228 22 - TSS region transcription start site region 25975
Tssr25976 2 122598883 to 122598923 40 - TSS region transcription start site region 25976
Tssr25977 2 122599671 to 122599698 27 - TSS region transcription start site region 25977
Tssr25978 2 122600407 to 122600417 10 - TSS region transcription start site region 25978
Tssr25979 2 122600498 to 122600530 32 - TSS region transcription start site region 25979
Tssr25980 2 122602542 to 122602562 20 - TSS region transcription start site region 25980
Tssr25981 2 122606903 to 122606915 12 - TSS region transcription start site region 25981
Tssr19850 2 122609704 to 122609723 19 + TSS region transcription start site region 19850
Tssr25982 2 122609842 to 122609853 11 - TSS region transcription start site region 25982
Tssr25983 2 122610008 to 122610015 7 - TSS region transcription start site region 25983
Cpgi12183 2 122610851 to 122611509 658 CpG island CpG island 12183
Tssr25984 2 122611222 to 122611233 11 - TSS region transcription start site region 25984
Tssr25985 2 122611238 to 122611283 45 - TSS region transcription start site region 25985
Cpgi12184 2 122630500 to 122631814 1314 CpG island CpG island 12184
Tssr19851 2 122630599 to 122630676 77 + TSS region transcription start site region 19851
Spata5l1 2 122630625 to 122632930 2305 + protein coding gene spermatogenesis associated 5-like 1
Tssr19852 2 122631195 to 122631226 31 + TSS region transcription start site region 19852
Tssr19853 2 122636962 to 122636973 11 + TSS region transcription start site region 19853
AA467197 2 122636968 to 122641085 4117 + protein coding gene expressed sequence AA467197
Cpgi12185 2 122637574 to 122638029 455 CpG island CpG island 12185
Tssr19854 2 122637844 to 122637864 20 + TSS region transcription start site region 19854
Tssr19855 2 122637867 to 122637923 56 + TSS region transcription start site region 19855
Mir147 2 122640803 to 122640881 78 + miRNA gene microRNA 147
Tssr19856 2 122640867 to 122640890 23 + TSS region transcription start site region 19856
Slc30a4 2 122681233 to 122702663 21430 - protein coding gene solute carrier family 30 (zinc transporter), member 4
Cpgi12186 2 122701860 to 122703019 1159 CpG island CpG island 12186
Tssr25986 2 122702615 to 122702717 102 - TSS region transcription start site region 25986
Tssr25987 2 122702727 to 122702785 58 - TSS region transcription start site region 25987
4930417H01Rik 2 122702828 to 122721456 18628 + lncRNA gene RIKEN cDNA 4930417H01 gene
1700056I18Rik 2 122703539 to 122704106 567 unclassified gene RIKEN cDNA 1700056I18 gene
Tssr25988 2 122704092 to 122704129 37 - TSS region transcription start site region 25988
Tssr19857 2 122704217 to 122704224 7 + TSS region transcription start site region 19857
Tssr19858 2 122704231 to 122704247 16 + TSS region transcription start site region 19858
Tssr19859 2 122704252 to 122704262 10 + TSS region transcription start site region 19859
Bloc1s6os 2 122733290 to 122738362 5072 - antisense lncRNA gene biogenesis of lysosomal organelles complex-1, subunit 6, pallidin, opposite strand
Cpgi12187 2 122738230 to 122738961 731 CpG island CpG island 12187
Tssr25989 2 122738345 to 122738365 20 - TSS region transcription start site region 25989
Tssr19860 2 122738495 to 122738600 105 + TSS region transcription start site region 19860
Bloc1s6 2 122738503 to 122749475 10972 + protein coding gene biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
Tssr19861 2 122738607 to 122738616 9 + TSS region transcription start site region 19861
Tssr19862 2 122738622 to 122738627 5 + TSS region transcription start site region 19862
Tssr19863 2 122738644 to 122738653 9 + TSS region transcription start site region 19863
Tssr19864 2 122746062 to 122746066 4 + TSS region transcription start site region 19864
Cpgi12188 2 122765043 to 122765819 776 CpG island CpG island 12188
Sqor 2 122765237 to 122809569 44332 + protein coding gene sulfide quinone oxidoreductase
Tssr19865 2 122765356 to 122765374 18 + TSS region transcription start site region 19865
Tssr19866 2 122765377 to 122765404 27 + TSS region transcription start site region 19866
Tssr628 2 122771285 to 122771327 42 + TSS region transcription start site region 628
Tssr19867 2 122771689 to 122771702 13 + TSS region transcription start site region 19867
Tssr19868 2 122771710 to 122771719 9 + TSS region transcription start site region 19868
Tssr19869 2 122798172 to 122798192 20 + TSS region transcription start site region 19869
D2Dcr66 2 122826603 to 122826753 150 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 66
D2Mit397 2 122826607 to 122826753 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 397
D2Dcr67 2 122826626 to 122826745 119 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 67
D2Mit396 2 122826627 to 122826745 118 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 396
Tssr25990 2 122930187 to 122930195 8 - TSS region transcription start site region 25990
Gm34430 2 122930371 to 122931340 969 + lncRNA gene predicted gene, 34430
Gm13988 2 123273924 to 123274211 287 + pseudogene predicted gene 13988
Otx2m2 2 123390053 to 148858457 25468404 QTL orthodenticle homolog 2 modifier 2
D2Mit164 2 123390053 to 123390195 142 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 164
D2Dcr68 2 123390095 to 123390214 119 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 68
D2Mit255 2 123391660 to 123391809 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 255
Pbrgcsf1 2 123391660 to 123391809 149 QTL peripheral blood stem cell response to granulocyte colony stimulating factor 1
D2Mit277 2 123430095 to 123430371 276 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 277
Tssr629 2 123487613 to 123487620 7 - TSS region transcription start site region 629
Gm39919 2 123774494 to 123798418 23924 - lncRNA gene predicted gene, 39919
D2Mit446 2 124038907 to 124039028 121 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 446
D2Mit485 2 124069227 to 124069350 123 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 485
Cpgi12189 2 124089777 to 124091054 1277 CpG island CpG island 12189
Tssr19870 2 124089961 to 124090018 57 + TSS region transcription start site region 19870
Sema6d 2 124089969 to 124667770 577801 + protein coding gene sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
4930517E11Rik 2 124123636 to 124129956 6320 - lincRNA gene RIKEN cDNA 4930517E11 gene
Tssr630 2 124174431 to 124174433 2 + TSS region transcription start site region 630
4930583P06Rik 2 124217679 to 124222331 4652 - lincRNA gene RIKEN cDNA 4930583P06 gene
Tssr25991 2 124222355 to 124222375 20 - TSS region transcription start site region 25991
Bw25 2 124413756 to 124413756 0 QTL body weight QTL 25
Tssr25992 2 124490181 to 124490183 2 - TSS region transcription start site region 25992