Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:121797862-122507875

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146 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aabpr 2 116202748 to 122377053 6174305 QTL aberrant activation of B cell proliferation
Frmd5 2 121545529 to 121807087 261558 - protein coding gene FERM domain containing 5
Cpgi12163 2 121806100 to 121807604 1504 CpG island CpG island 12163
Tssr19784 2 121806331 to 121806341 10 + TSS region transcription start site region 19784
Tssr25948 2 121806988 to 121807018 30 - TSS region transcription start site region 25948
Tssr25949 2 121807024 to 121807045 21 - TSS region transcription start site region 25949
Gm14019 2 121865781 to 121866717 936 - antisense lncRNA gene predicted gene 14019
Cpgi12164 2 121865996 to 121866237 241 CpG island CpG island 12164
Tssr19785 2 121866420 to 121866432 12 + TSS region transcription start site region 19785
Cpgi12165 2 121866429 to 121867834 1405 CpG island CpG island 12165
Tssr19786 2 121866918 to 121866997 79 + TSS region transcription start site region 19786
Casc4 2 121866970 to 121936220 69250 + protein coding gene cancer susceptibility candidate 4
Tssr19787 2 121867083 to 121867159 76 + TSS region transcription start site region 19787
Gm23983 2 121891571 to 121891684 113 - rRNA gene predicted gene, 23983
Tssr19788 2 121901188 to 121901220 32 + TSS region transcription start site region 19788
Tssr19789 2 121934751 to 121934777 26 + TSS region transcription start site region 19789
Tssr19790 2 121934823 to 121934842 19 + TSS region transcription start site region 19790
Gm39916 2 121937318 to 121943981 6663 - lncRNA gene predicted gene, 39916
Mageb3 2 121953771 to 121956092 2321 - protein coding gene melanoma antigen, family B, 3
Cpgi12166 2 121955623 to 121956939 1316 CpG island CpG island 12166
Tssr19791 2 121955964 to 121955982 18 + TSS region transcription start site region 19791
Ctdspl2 2 121956001 to 122013642 57641 + protein coding gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
Tssr19792 2 121956135 to 121956165 30 + TSS region transcription start site region 19792
Tssr19793 2 121956437 to 121956480 43 + TSS region transcription start site region 19793
Tssr19794 2 121956651 to 121956664 13 + TSS region transcription start site region 19794
Tssr625 2 121985677 to 121985682 5 + TSS region transcription start site region 625
Tssr19795 2 121987978 to 121987982 4 + TSS region transcription start site region 19795
Tssr19796 2 122000658 to 122000663 5 + TSS region transcription start site region 19796
Tssr19797 2 122014805 to 122014809 4 + TSS region transcription start site region 19797
Cpgi12167 2 122028007 to 122029375 1368 CpG island CpG island 12167
Tssr19798 2 122028121 to 122028147 26 + TSS region transcription start site region 19798
Tssr19799 2 122028544 to 122028563 19 + TSS region transcription start site region 19799
Eif3j1 2 122028580 to 122053632 25052 + protein coding gene eukaryotic translation initiation factor 3, subunit J1
Tssr19800 2 122028586 to 122028598 12 + TSS region transcription start site region 19800
Tssr19801 2 122028601 to 122028664 63 + TSS region transcription start site region 19801
Gm47314 2 122028642 to 122028709 67 + miRNA gene predicted gene, 47314
Spg11 2 122053520 to 122118386 64866 - protein coding gene SPG11, spatacsin vesicle trafficking associated
5830407F19Rik 2 122098497 to 122100333 1836 unclassified gene RIKEN cDNA 5830407F19 gene
Tssr19802 2 122116924 to 122116935 11 + TSS region transcription start site region 19802
Cpgi12168 2 122117957 to 122118596 639 CpG island CpG island 12168
Tssr25950 2 122118317 to 122118349 32 - TSS region transcription start site region 25950
Tssr25951 2 122118364 to 122118397 33 - TSS region transcription start site region 25951
Tssr19803 2 122118539 to 122118554 15 + TSS region transcription start site region 19803
Patl2 2 122120108 to 122186189 66081 - protein coding gene protein associated with topoisomerase II homolog 2 (yeast)
Tssr25952 2 122125813 to 122125828 15 - TSS region transcription start site region 25952
Tssr25953 2 122146954 to 122146957 3 - TSS region transcription start site region 25953
Tssr19804 2 122147475 to 122147494 19 + TSS region transcription start site region 19804
Tssr25954 2 122147502 to 122147520 18 - TSS region transcription start site region 25954
Cpgi12169 2 122147592 to 122148244 652 CpG island CpG island 12169
Tssr19805 2 122147680 to 122147696 16 + TSS region transcription start site region 19805
B2m 2 122147687 to 122153082 5395 + protein coding gene beta-2 microglobulin
Tssr19806 2 122147722 to 122147728 6 + TSS region transcription start site region 19806
Tssr19807 2 122149164 to 122149184 20 + TSS region transcription start site region 19807
Tssr19808 2 122149217 to 122149258 41 + TSS region transcription start site region 19808
Tssr19809 2 122149561 to 122149574 13 + TSS region transcription start site region 19809
Tssr19810 2 122150562 to 122150609 47 + TSS region transcription start site region 19810
Tssr19811 2 122150875 to 122150886 11 + TSS region transcription start site region 19811
Tssr25955 2 122150910 to 122150922 12 - TSS region transcription start site region 25955
Tssr19812 2 122150910 to 122150930 20 + TSS region transcription start site region 19812
Tssr19813 2 122150934 to 122150948 14 + TSS region transcription start site region 19813
Tssr19814 2 122150957 to 122150966 9 + TSS region transcription start site region 19814
Tssr19815 2 122150973 to 122150980 7 + TSS region transcription start site region 19815
Tssr25956 2 122150987 to 122150998 11 - TSS region transcription start site region 25956
Tssr19816 2 122150989 to 122151001 12 + TSS region transcription start site region 19816
Tssr19817 2 122151012 to 122151026 14 + TSS region transcription start site region 19817
Tssr19818 2 122151035 to 122151085 50 + TSS region transcription start site region 19818
Tssr19819 2 122151092 to 122151104 12 + TSS region transcription start site region 19819
Tssr25957 2 122151105 to 122151130 25 - TSS region transcription start site region 25957
Tssr19820 2 122152608 to 122152619 11 + TSS region transcription start site region 19820
Tssr19821 2 122152639 to 122152750 111 + TSS region transcription start site region 19821
Tssr19822 2 122152751 to 122152762 11 + TSS region transcription start site region 19822
Tssr19823 2 122152784 to 122152835 51 + TSS region transcription start site region 19823
Tssr19824 2 122152839 to 122152846 7 + TSS region transcription start site region 19824
Tssr19825 2 122152862 to 122152895 33 + TSS region transcription start site region 19825
Tssr25958 2 122152862 to 122152875 13 - TSS region transcription start site region 25958
Tssr19826 2 122152902 to 122152926 24 + TSS region transcription start site region 19826
Tssr19827 2 122152931 to 122152943 12 + TSS region transcription start site region 19827
Tssr19828 2 122152968 to 122153001 33 + TSS region transcription start site region 19828
Tssr19829 2 122153012 to 122153047 35 + TSS region transcription start site region 19829
Tssr25959 2 122153062 to 122153086 24 - TSS region transcription start site region 25959
Tssr19830 2 122160683 to 122160693 10 + TSS region transcription start site region 19830
Tssr626 2 122160696 to 122160697 1 + TSS region transcription start site region 626
Trim69 2 122160700 to 122179027 18327 + protein coding gene tripartite motif-containing 69
Tssr19831 2 122160701 to 122160737 36 + TSS region transcription start site region 19831
Tssr19832 2 122161542 to 122161559 17 + TSS region transcription start site region 19832
Tssr19833 2 122186268 to 122186285 17 + TSS region transcription start site region 19833
Terb2 2 122186272 to 122206393 20121 + protein coding gene telomere repeat binding bouquet formation protein 2
Cpgi12170 2 122186278 to 122186562 284 CpG island CpG island 12170
Gm14050 2 122207920 to 122208265 345 + pseudogene predicted gene 14050
Gm14058 2 122214620 to 122215354 734 - pseudogene predicted gene 14058
Tssr25960 2 122215355 to 122215376 21 - TSS region transcription start site region 25960
Rps12-ps10 2 122219993 to 122220391 398 + pseudogene ribosomal protein S12, pseudogene 10
Cpgi12171 2 122234513 to 122234990 477 CpG island CpG island 12171
Tssr19834 2 122234778 to 122234822 44 + TSS region transcription start site region 19834
Tssr19835 2 122234833 to 122234841 8 + TSS region transcription start site region 19835
Sord 2 122234839 to 122265337 30498 + protein coding gene sorbitol dehydrogenase
Tssr19836 2 122258584 to 122258601 17 + TSS region transcription start site region 19836
Tssr19837 2 122264751 to 122264764 13 + TSS region transcription start site region 19837
Tssr19838 2 122264815 to 122264824 9 + TSS region transcription start site region 19838
Tssr19839 2 122264854 to 122264874 20 + TSS region transcription start site region 19839
Duox2 2 122279247 to 122298165 18918 - protein coding gene dual oxidase 2
Cpgi12172 2 122297403 to 122297828 425 CpG island CpG island 12172
Cpgi12173 2 122298265 to 122299193 928 CpG island CpG island 12173
Tssr25961 2 122298718 to 122298737 19 - TSS region transcription start site region 25961
Tssr19840 2 122298898 to 122298903 5 + TSS region transcription start site region 19840
Duoxa2 2 122298900 to 122302885 3985 + protein coding gene dual oxidase maturation factor 2
Cpgi12174 2 122300755 to 122302099 1344 CpG island CpG island 12174
Tssr19841 2 122301131 to 122301150 19 + TSS region transcription start site region 19841
Duoxa1 2 122303540 to 122313746 10206 - protein coding gene dual oxidase maturation factor 1
Tssr25962 2 122305621 to 122305628 7 - TSS region transcription start site region 25962
Tssr25963 2 122305671 to 122305680 9 - TSS region transcription start site region 25963
Tssr25964 2 122305706 to 122305715 9 - TSS region transcription start site region 25964
Tssr25965 2 122306365 to 122306375 10 - TSS region transcription start site region 25965
Cpgi12175 2 122312842 to 122313331 489 CpG island CpG island 12175
Cpgi12176 2 122313602 to 122313847 245 CpG island CpG island 12176
Tssr25966 2 122313714 to 122313736 22 - TSS region transcription start site region 25966
Tssr19842 2 122313789 to 122313806 17 + TSS region transcription start site region 19842
Tssr19843 2 122313826 to 122313835 9 + TSS region transcription start site region 19843
Duox1 2 122315672 to 122347972 32300 + protein coding gene dual oxidase 1
Cpgi12177 2 122337614 to 122337838 224 CpG island CpG island 12177
Cpgi12178 2 122348197 to 122349408 1211 CpG island CpG island 12178
Shf 2 122348892 to 122369162 20270 - protein coding gene Src homology 2 domain containing F
Cpgi12179 2 122368390 to 122369748 1358 CpG island CpG island 12179
Tssr25967 2 122369130 to 122369154 24 - TSS region transcription start site region 25967
Tssr627 2 122369165 to 122369166 1 - TSS region transcription start site region 627
Gm39918 2 122369242 to 122389004 19762 + lncRNA gene predicted gene, 39918
Cpgi12180 2 122375457 to 122376464 1007 CpG island CpG island 12180
n-THgtg4 2 122375494 to 122375565 71 - tRNA gene nuclear encoded tRNA histidine 4 (anticodon GTG)
Tssr19844 2 122375694 to 122375721 27 + TSS region transcription start site region 19844
D2Mit30 2 122376665 to 122377053 388 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 30
El2 2 122376665 to 142690215 20313550 QTL epilepsy 2
Cpgi12181 2 122377307 to 122378216 909 CpG island CpG island 12181
n-THgtg3 2 122377363 to 122377434 71 - tRNA gene nuclear encoded tRNA histidine 3 (anticodon GTG)
Tssr19845 2 122377575 to 122377597 22 + TSS region transcription start site region 19845
n-THgtg5 2 122377968 to 122378039 71 + tRNA gene nuclear encoded tRNA histidine 5 (anticodon GTG)
Tssr19846 2 122382937 to 122382952 15 + TSS region transcription start site region 19846
Gm24409 2 122385489 to 122385640 151 - snRNA gene predicted gene, 24409
Tssr25968 2 122396215 to 122396217 2 - TSS region transcription start site region 25968
Tssr19847 2 122426432 to 122426461 29 + TSS region transcription start site region 19847
Slc28a2 2 122426477 to 122461137 34660 + protein coding gene solute carrier family 28 (sodium-coupled nucleoside transporter), member 2
Gm14086 2 122427194 to 122427469 275 + pseudogene predicted gene 14086
Bambi-ps1 2 122466935 to 122467526 591 - pseudogene BMP and activin membrane-bound inhibitor, pseudogene (Xenopus laevis)
Cpgi12182 2 122467152 to 122468198 1046 CpG island CpG island 12182
Tssr25969 2 122467724 to 122467750 26 - TSS region transcription start site region 25969
Tssr25970 2 122469131 to 122469138 7 - TSS region transcription start site region 25970
Gm14085 2 122484941 to 122528040 43099 + protein coding gene predicted gene 14085