Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:121552024-122062045

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Frmd5 2 121545529 to 121807087 261558 - protein coding gene FERM domain containing 5
Tssr25947 2 121569516 to 121569518 2 - TSS region transcription start site region 25947
Tssr19781 2 121621417 to 121621426 9 + TSS region transcription start site region 19781
Gm14021 2 121700765 to 121701725 960 - pseudogene predicted gene 14021
Tssr19782 2 121718505 to 121718509 4 + TSS region transcription start site region 19782
Gm14020 2 121718530 to 121719191 661 + pseudogene predicted gene 14020
4930402M22Rik 2 121778615 to 121779736 1121 unclassified gene RIKEN cDNA 4930402M22 gene
Tssr19783 2 121793636 to 121793638 2 + TSS region transcription start site region 19783
Cpgi12163 2 121806100 to 121807604 1504 CpG island CpG island 12163
Tssr19784 2 121806331 to 121806341 10 + TSS region transcription start site region 19784
Tssr25948 2 121806988 to 121807018 30 - TSS region transcription start site region 25948
Tssr25949 2 121807024 to 121807045 21 - TSS region transcription start site region 25949
Gm14019 2 121865781 to 121866717 936 - antisense lncRNA gene predicted gene 14019
Cpgi12164 2 121865996 to 121866237 241 CpG island CpG island 12164
Tssr19785 2 121866420 to 121866432 12 + TSS region transcription start site region 19785
Cpgi12165 2 121866429 to 121867834 1405 CpG island CpG island 12165
Tssr19786 2 121866918 to 121866997 79 + TSS region transcription start site region 19786
Casc4 2 121866970 to 121936220 69250 + protein coding gene cancer susceptibility candidate 4
Tssr19787 2 121867083 to 121867159 76 + TSS region transcription start site region 19787
Gm23983 2 121891571 to 121891684 113 - rRNA gene predicted gene, 23983
Tssr19788 2 121901188 to 121901220 32 + TSS region transcription start site region 19788
Tssr19789 2 121934751 to 121934777 26 + TSS region transcription start site region 19789
Tssr19790 2 121934823 to 121934842 19 + TSS region transcription start site region 19790
Gm39916 2 121937318 to 121943981 6663 - lncRNA gene predicted gene, 39916
Mageb3 2 121953771 to 121956092 2321 - protein coding gene melanoma antigen, family B, 3
Cpgi12166 2 121955623 to 121956939 1316 CpG island CpG island 12166
Tssr19791 2 121955964 to 121955982 18 + TSS region transcription start site region 19791
Ctdspl2 2 121956001 to 122013642 57641 + protein coding gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
Tssr19792 2 121956135 to 121956165 30 + TSS region transcription start site region 19792
Tssr19793 2 121956437 to 121956480 43 + TSS region transcription start site region 19793
Tssr19794 2 121956651 to 121956664 13 + TSS region transcription start site region 19794
Tssr625 2 121985677 to 121985682 5 + TSS region transcription start site region 625
Tssr19795 2 121987978 to 121987982 4 + TSS region transcription start site region 19795
Tssr19796 2 122000658 to 122000663 5 + TSS region transcription start site region 19796
Tssr19797 2 122014805 to 122014809 4 + TSS region transcription start site region 19797
Cpgi12167 2 122028007 to 122029375 1368 CpG island CpG island 12167
Tssr19798 2 122028121 to 122028147 26 + TSS region transcription start site region 19798
Tssr19799 2 122028544 to 122028563 19 + TSS region transcription start site region 19799
Eif3j1 2 122028580 to 122053632 25052 + protein coding gene eukaryotic translation initiation factor 3, subunit J1
Tssr19800 2 122028586 to 122028598 12 + TSS region transcription start site region 19800
Tssr19801 2 122028601 to 122028664 63 + TSS region transcription start site region 19801
Gm47314 2 122028642 to 122028709 67 + miRNA gene predicted gene, 47314
Spg11 2 122053520 to 122118386 64866 - protein coding gene SPG11, spatacsin vesicle trafficking associated