Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:121435765-121966725

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pdia3 2 121413902 to 121438687 24785 + protein coding gene protein disulfide isomerase associated 3
Tssr19767 2 121435911 to 121435922 11 + TSS region transcription start site region 19767
Tssr19768 2 121436355 to 121436364 9 + TSS region transcription start site region 19768
Tssr19769 2 121437607 to 121437646 39 + TSS region transcription start site region 19769
Tssr19770 2 121437905 to 121437946 41 + TSS region transcription start site region 19770
Ell3 2 121439027 to 121442601 3574 - protein coding gene elongation factor RNA polymerase II-like 3
Cpgi12158 2 121442090 to 121442622 532 CpG island CpG island 12158
Tssr25935 2 121442574 to 121442614 40 - TSS region transcription start site region 25935
Cpgi12159 2 121448805 to 121450326 1521 CpG island CpG island 12159
Serf2 2 121449198 to 121453420 4222 + protein coding gene small EDRK-rich factor 2
Tssr19771 2 121449362 to 121449393 31 + TSS region transcription start site region 19771
Tssr25936 2 121450195 to 121450213 18 - TSS region transcription start site region 25936
Tssr19772 2 121450306 to 121450313 7 + TSS region transcription start site region 19772
Gm22953 2 121450670 to 121450770 100 - miRNA gene predicted gene, 22953
Serinc4 2 121451177 to 121456824 5647 - protein coding gene serine incorporator 4
Tssr25937 2 121456740 to 121456761 21 - TSS region transcription start site region 25937
Cpgi12160 2 121456945 to 121457369 424 CpG island CpG island 12160
Tssr19773 2 121457078 to 121457127 49 + TSS region transcription start site region 19773
Hypk 2 121457088 to 121458440 1352 + protein coding gene huntingtin interacting protein K
Tssr19774 2 121457437 to 121457491 54 + TSS region transcription start site region 19774
Mfap1b 2 121461666 to 121474023 12357 - protein coding gene microfibrillar-associated protein 1B
Cpgi12161 2 121473953 to 121474156 203 CpG island CpG island 12161
Tssr25938 2 121473993 to 121474037 44 - TSS region transcription start site region 25938
Tssr25939 2 121474041 to 121474048 7 - TSS region transcription start site region 25939
Gm14017 2 121481130 to 121481515 385 + pseudogene predicted gene 14017
Gm14018 2 121485432 to 121491512 6080 + pseudogene predicted gene 14018
Mfap1a 2 121492681 to 121506656 13975 - protein coding gene microfibrillar-associated protein 1A
Cpgi12162 2 121506581 to 121506854 273 CpG island CpG island 12162
Tssr25940 2 121506639 to 121506667 28 - TSS region transcription start site region 25940
Tssr19775 2 121506702 to 121506709 7 + TSS region transcription start site region 19775
Tssr19776 2 121506715 to 121506733 18 + TSS region transcription start site region 19776
Wdr76 2 121506723 to 121544860 38137 + protein coding gene WD repeat domain 76
Tssr19777 2 121506748 to 121506792 44 + TSS region transcription start site region 19777
Tssr19778 2 121509819 to 121509846 27 + TSS region transcription start site region 19778
Tssr19779 2 121509856 to 121509862 6 + TSS region transcription start site region 19779
Tssr25941 2 121541962 to 121541966 4 - TSS region transcription start site region 25941
Tssr19780 2 121544439 to 121544444 5 + TSS region transcription start site region 19780
Frmd5 2 121545529 to 121807087 261558 - protein coding gene FERM domain containing 5
Tssr25942 2 121549614 to 121549621 7 - TSS region transcription start site region 25942
Tssr25943 2 121551264 to 121551275 11 - TSS region transcription start site region 25943
Tssr25944 2 121551277 to 121551286 9 - TSS region transcription start site region 25944
Tssr25945 2 121551353 to 121551376 23 - TSS region transcription start site region 25945
Tssr25946 2 121551383 to 121551419 36 - TSS region transcription start site region 25946
Tssr25947 2 121569516 to 121569518 2 - TSS region transcription start site region 25947
Tssr19781 2 121621417 to 121621426 9 + TSS region transcription start site region 19781
Gm14021 2 121700765 to 121701725 960 - pseudogene predicted gene 14021
Tssr19782 2 121718505 to 121718509 4 + TSS region transcription start site region 19782
Gm14020 2 121718530 to 121719191 661 + pseudogene predicted gene 14020
4930402M22Rik 2 121778615 to 121779736 1121 unclassified gene RIKEN cDNA 4930402M22 gene
Tssr19783 2 121793636 to 121793638 2 + TSS region transcription start site region 19783
Cpgi12163 2 121806100 to 121807604 1504 CpG island CpG island 12163
Tssr19784 2 121806331 to 121806341 10 + TSS region transcription start site region 19784
Tssr25948 2 121806988 to 121807018 30 - TSS region transcription start site region 25948
Tssr25949 2 121807024 to 121807045 21 - TSS region transcription start site region 25949
Gm14019 2 121865781 to 121866717 936 - antisense lncRNA gene predicted gene 14019
Cpgi12164 2 121865996 to 121866237 241 CpG island CpG island 12164
Tssr19785 2 121866420 to 121866432 12 + TSS region transcription start site region 19785
Cpgi12165 2 121866429 to 121867834 1405 CpG island CpG island 12165
Tssr19786 2 121866918 to 121866997 79 + TSS region transcription start site region 19786
Casc4 2 121866970 to 121936220 69250 + protein coding gene cancer susceptibility candidate 4
Tssr19787 2 121867083 to 121867159 76 + TSS region transcription start site region 19787
Gm23983 2 121891571 to 121891684 113 - rRNA gene predicted gene, 23983
Tssr19788 2 121901188 to 121901220 32 + TSS region transcription start site region 19788
Tssr19789 2 121934751 to 121934777 26 + TSS region transcription start site region 19789
Tssr19790 2 121934823 to 121934842 19 + TSS region transcription start site region 19790
Gm39916 2 121937318 to 121943981 6663 - lncRNA gene predicted gene, 39916
Mageb3 2 121953771 to 121956092 2321 - protein coding gene melanoma antigen, family B, 3
Cpgi12166 2 121955623 to 121956939 1316 CpG island CpG island 12166
Tssr19791 2 121955964 to 121955982 18 + TSS region transcription start site region 19791
Ctdspl2 2 121956001 to 122013642 57641 + protein coding gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
Tssr19792 2 121956135 to 121956165 30 + TSS region transcription start site region 19792
Tssr19793 2 121956437 to 121956480 43 + TSS region transcription start site region 19793
Tssr19794 2 121956651 to 121956664 13 + TSS region transcription start site region 19794