Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:120877048-121197067

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ubr1 2 120860269 to 120970715 110446 - protein coding gene ubiquitin protein ligase E3 component n-recognin 1
Cpgi12147 2 120970299 to 120970966 667 CpG island CpG island 12147
Tssr25888 2 120970597 to 120970636 39 - TSS region transcription start site region 25888
Tssr25889 2 120970646 to 120970703 57 - TSS region transcription start site region 25889
Tssr25890 2 120970706 to 120970761 55 - TSS region transcription start site region 25890
Tssr19721 2 120971648 to 120971652 4 + TSS region transcription start site region 19721
Cpgi12148 2 120976942 to 120977881 939 CpG island CpG island 12148
Tmem62 2 120977017 to 121007852 30835 + protein coding gene transmembrane protein 62
Tssr19722 2 120977081 to 120977107 26 + TSS region transcription start site region 19722
Tssr19723 2 120977148 to 120977185 37 + TSS region transcription start site region 19723
Tssr19724 2 120977248 to 120977308 60 + TSS region transcription start site region 19724
Gm44325 2 120977651 to 120977727 76 - miRNA gene predicted gene, 44325
Rnu3b-ps2 2 121004089 to 121004303 214 + pseudogene U3B small nuclear RNA pseudogene 2
Gm22865 2 121004089 to 121004302 213 + snoRNA gene predicted gene, 22865
Cpgi12149 2 121008275 to 121008751 476 CpG island CpG island 12149
Ccndbp1 2 121008403 to 121016904 8501 + protein coding gene cyclin D-type binding-protein 1
Tssr19725 2 121008416 to 121008481 65 + TSS region transcription start site region 19725
Tssr19726 2 121008488 to 121008506 18 + TSS region transcription start site region 19726
Tssr19727 2 121015936 to 121015940 4 + TSS region transcription start site region 19727
Tssr19728 2 121016398 to 121016423 25 + TSS region transcription start site region 19728
Epb42 2 121017891 to 121036877 18986 - protein coding gene erythrocyte membrane protein band 4.2
Taste2 2 121017891 to 121036877 18986 QTL taste-saccharin preference 2
Tssr25891 2 121025742 to 121025744 2 - TSS region transcription start site region 25891
Tssr25892 2 121036674 to 121036689 15 - TSS region transcription start site region 25892
Tssr25893 2 121036695 to 121036735 40 - TSS region transcription start site region 25893
Tssr25894 2 121036750 to 121036774 24 - TSS region transcription start site region 25894
Tssr25895 2 121037048 to 121037067 19 - TSS region transcription start site region 25895
Tgm5 2 121046111 to 121085759 39648 - protein coding gene transglutaminase 5
Gm14213 2 121049799 to 121050566 767 + pseudogene predicted gene 14213
Tssr25896 2 121085733 to 121085744 11 - TSS region transcription start site region 25896
Tssr25897 2 121085746 to 121085753 7 - TSS region transcription start site region 25897
Tssr25898 2 121085778 to 121085794 16 - TSS region transcription start site region 25898
Tssr25899 2 121085835 to 121085846 11 - TSS region transcription start site region 25899
Tgm7 2 121093565 to 121109795 16230 - protein coding gene transglutaminase 7
Tssr25900 2 121101160 to 121101165 5 - TSS region transcription start site region 25900
Tssr25901 2 121116438 to 121116447 9 - TSS region transcription start site region 25901
Tssr25902 2 121116454 to 121116465 11 - TSS region transcription start site region 25902
D2Ertd616e 2 121121284 to 121121509 225 DNA segment DNA segment, Chr 2, ERATO Doi 616, expressed
Gm23858 2 121135191 to 121135296 105 - snRNA gene predicted gene, 23858
Lcmt2 2 121137292 to 121140698 3406 - protein coding gene leucine carboxyl methyltransferase 2
Cpgi12150 2 121139400 to 121140775 1375 CpG island CpG island 12150
Tssr25903 2 121140343 to 121140362 19 - TSS region transcription start site region 25903
Tssr25904 2 121140371 to 121140394 23 - TSS region transcription start site region 25904
Tssr19729 2 121140407 to 121140461 54 + TSS region transcription start site region 19729
Adal 2 121140428 to 121156680 16252 + protein coding gene adenosine deaminase-like
Tssr19730 2 121140501 to 121140530 29 + TSS region transcription start site region 19730
Tssr25905 2 121140622 to 121140632 10 - TSS region transcription start site region 25905
Tssr25906 2 121140649 to 121140690 41 - TSS region transcription start site region 25906
Tssr19731 2 121140739 to 121140767 28 + TSS region transcription start site region 19731
4921537I17Rik 2 121157427 to 121159436 2009 unclassified non-coding RNA gene RIKEN cDNA 4921537I17 gene
Zscan29 2 121158273 to 121171125 12852 - protein coding gene zinc finger SCAN domains 29
Tssr25907 2 121159735 to 121159749 14 - TSS region transcription start site region 25907
Tssr25908 2 121160156 to 121160171 15 - TSS region transcription start site region 25908
Tssr25909 2 121160207 to 121160219 12 - TSS region transcription start site region 25909
Tssr25910 2 121160302 to 121160324 22 - TSS region transcription start site region 25910
Tssr19732 2 121170178 to 121170180 2 + TSS region transcription start site region 19732
Cpgi12151 2 121170526 to 121171653 1127 CpG island CpG island 12151
Tssr19733 2 121170666 to 121170691 25 + TSS region transcription start site region 19733
Tssr25911 2 121171077 to 121171093 16 - TSS region transcription start site region 25911
Tssr25912 2 121171107 to 121171158 51 - TSS region transcription start site region 25912
Tssr19734 2 121171155 to 121171198 43 + TSS region transcription start site region 19734
Tubgcp4 2 121171168 to 121198770 27602 + protein coding gene tubulin, gamma complex associated protein 4
Tssr19735 2 121171204 to 121171279 75 + TSS region transcription start site region 19735
Tssr621 2 121171576 to 121171587 11 + TSS region transcription start site region 621
Tssr19736 2 121187440 to 121187471 31 + TSS region transcription start site region 19736
Trp53bp1 2 121193281 to 121271407 78126 - protein coding gene transformation related protein 53 binding protein 1