Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:120861168-121508770

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173 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
AV039307 2 120850705 to 120866689 15984 + lncRNA gene expressed sequence AV039307
Ubr1 2 120860269 to 120970715 110446 - protein coding gene ubiquitin protein ligase E3 component n-recognin 1
Cpgi12147 2 120970299 to 120970966 667 CpG island CpG island 12147
Tssr25888 2 120970597 to 120970636 39 - TSS region transcription start site region 25888
Tssr25889 2 120970646 to 120970703 57 - TSS region transcription start site region 25889
Tssr25890 2 120970706 to 120970761 55 - TSS region transcription start site region 25890
Tssr19721 2 120971648 to 120971652 4 + TSS region transcription start site region 19721
Cpgi12148 2 120976942 to 120977881 939 CpG island CpG island 12148
Tmem62 2 120977017 to 121007852 30835 + protein coding gene transmembrane protein 62
Tssr19722 2 120977081 to 120977107 26 + TSS region transcription start site region 19722
Tssr19723 2 120977148 to 120977185 37 + TSS region transcription start site region 19723
Tssr19724 2 120977248 to 120977308 60 + TSS region transcription start site region 19724
Gm44325 2 120977651 to 120977727 76 - miRNA gene predicted gene, 44325
Rnu3b-ps2 2 121004089 to 121004303 214 + pseudogene U3B small nuclear RNA pseudogene 2
Gm22865 2 121004089 to 121004302 213 + snoRNA gene predicted gene, 22865
Cpgi12149 2 121008275 to 121008751 476 CpG island CpG island 12149
Ccndbp1 2 121008403 to 121016904 8501 + protein coding gene cyclin D-type binding-protein 1
Tssr19725 2 121008416 to 121008481 65 + TSS region transcription start site region 19725
Tssr19726 2 121008488 to 121008506 18 + TSS region transcription start site region 19726
Tssr19727 2 121015936 to 121015940 4 + TSS region transcription start site region 19727
Tssr19728 2 121016398 to 121016423 25 + TSS region transcription start site region 19728
Taste2 2 121017891 to 121036877 18986 QTL taste-saccharin preference 2
Epb42 2 121017891 to 121036877 18986 - protein coding gene erythrocyte membrane protein band 4.2
Tssr25891 2 121025742 to 121025744 2 - TSS region transcription start site region 25891
Tssr25892 2 121036674 to 121036689 15 - TSS region transcription start site region 25892
Tssr25893 2 121036695 to 121036735 40 - TSS region transcription start site region 25893
Tssr25894 2 121036750 to 121036774 24 - TSS region transcription start site region 25894
Tssr25895 2 121037048 to 121037067 19 - TSS region transcription start site region 25895
Tgm5 2 121046111 to 121085759 39648 - protein coding gene transglutaminase 5
Gm14213 2 121049799 to 121050566 767 + pseudogene predicted gene 14213
Tssr25896 2 121085733 to 121085744 11 - TSS region transcription start site region 25896
Tssr25897 2 121085746 to 121085753 7 - TSS region transcription start site region 25897
Tssr25898 2 121085778 to 121085794 16 - TSS region transcription start site region 25898
Tssr25899 2 121085835 to 121085846 11 - TSS region transcription start site region 25899
Tgm7 2 121093565 to 121109795 16230 - protein coding gene transglutaminase 7
Tssr25900 2 121101160 to 121101165 5 - TSS region transcription start site region 25900
Tssr25901 2 121116438 to 121116447 9 - TSS region transcription start site region 25901
Tssr25902 2 121116454 to 121116465 11 - TSS region transcription start site region 25902
D2Ertd616e 2 121121284 to 121121509 225 DNA segment DNA segment, Chr 2, ERATO Doi 616, expressed
Gm23858 2 121135191 to 121135296 105 - snRNA gene predicted gene, 23858
Lcmt2 2 121137292 to 121140698 3406 - protein coding gene leucine carboxyl methyltransferase 2
Cpgi12150 2 121139400 to 121140775 1375 CpG island CpG island 12150
Tssr25903 2 121140343 to 121140362 19 - TSS region transcription start site region 25903
Tssr25904 2 121140371 to 121140394 23 - TSS region transcription start site region 25904
Tssr19729 2 121140407 to 121140461 54 + TSS region transcription start site region 19729
Adal 2 121140428 to 121156680 16252 + protein coding gene adenosine deaminase-like
Tssr19730 2 121140501 to 121140530 29 + TSS region transcription start site region 19730
Tssr25905 2 121140622 to 121140632 10 - TSS region transcription start site region 25905
Tssr25906 2 121140649 to 121140690 41 - TSS region transcription start site region 25906
Tssr19731 2 121140739 to 121140767 28 + TSS region transcription start site region 19731
4921537I17Rik 2 121157427 to 121159436 2009 unclassified non-coding RNA gene RIKEN cDNA 4921537I17 gene
Zscan29 2 121158273 to 121171125 12852 - protein coding gene zinc finger SCAN domains 29
Tssr25907 2 121159735 to 121159749 14 - TSS region transcription start site region 25907
Tssr25908 2 121160156 to 121160171 15 - TSS region transcription start site region 25908
Tssr25909 2 121160207 to 121160219 12 - TSS region transcription start site region 25909
Tssr25910 2 121160302 to 121160324 22 - TSS region transcription start site region 25910
Tssr19732 2 121170178 to 121170180 2 + TSS region transcription start site region 19732
Cpgi12151 2 121170526 to 121171653 1127 CpG island CpG island 12151
Tssr19733 2 121170666 to 121170691 25 + TSS region transcription start site region 19733
Tssr25911 2 121171077 to 121171093 16 - TSS region transcription start site region 25911
Tssr25912 2 121171107 to 121171158 51 - TSS region transcription start site region 25912
Tssr19734 2 121171155 to 121171198 43 + TSS region transcription start site region 19734
Tubgcp4 2 121171168 to 121198770 27602 + protein coding gene tubulin, gamma complex associated protein 4
Tssr19735 2 121171204 to 121171279 75 + TSS region transcription start site region 19735
Tssr621 2 121171576 to 121171587 11 + TSS region transcription start site region 621
Tssr19736 2 121187440 to 121187471 31 + TSS region transcription start site region 19736
Trp53bp1 2 121193281 to 121271407 78126 - protein coding gene transformation related protein 53 binding protein 1
Tssr25913 2 121211967 to 121211977 10 - TSS region transcription start site region 25913
Tssr25914 2 121235802 to 121235846 44 - TSS region transcription start site region 25914
Tssr25915 2 121236056 to 121236102 46 - TSS region transcription start site region 25915
Tssr25916 2 121241831 to 121241835 4 - TSS region transcription start site region 25916
Cpgi12152 2 121270828 to 121271689 861 CpG island CpG island 12152
Tssr25917 2 121271315 to 121271322 7 - TSS region transcription start site region 25917
Tssr25918 2 121271355 to 121271397 42 - TSS region transcription start site region 25918
Tssr25919 2 121271403 to 121271410 7 - TSS region transcription start site region 25919
Cpgi12153 2 121289095 to 121290301 1206 CpG island CpG island 12153
Tssr19737 2 121289589 to 121289606 17 + TSS region transcription start site region 19737
Map1a 2 121289601 to 121310832 21231 + protein coding gene microtubule-associated protein 1 A
Tssr19738 2 121289699 to 121289710 11 + TSS region transcription start site region 19738
Tssr19739 2 121289722 to 121289736 14 + TSS region transcription start site region 19739
Tssr25920 2 121290298 to 121290309 11 - TSS region transcription start site region 25920
Gm14978 2 121293703 to 121296008 2305 - antisense lncRNA gene predicted gene 14978
Tssr19740 2 121295437 to 121295486 49 + TSS region transcription start site region 19740
D2Mit445 2 121297613 to 121297733 120 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 445
D2Dcr65 2 121297616 to 121297752 136 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 65
Tssr19741 2 121298592 to 121298608 16 + TSS region transcription start site region 19741
Tssr19742 2 121299483 to 121299501 18 + TSS region transcription start site region 19742
Cpgi12154 2 121299589 to 121299856 267 CpG island CpG island 12154
Tssr19743 2 121300363 to 121300374 11 + TSS region transcription start site region 19743
Tssr19744 2 121300633 to 121300642 9 + TSS region transcription start site region 19744
Tssr25921 2 121300667 to 121300737 70 - TSS region transcription start site region 25921
Tssr19745 2 121300942 to 121300956 14 + TSS region transcription start site region 19745
Tssr25922 2 121301265 to 121301298 33 - TSS region transcription start site region 25922
Tssr19746 2 121303394 to 121303406 12 + TSS region transcription start site region 19746
Tssr19747 2 121303409 to 121303421 12 + TSS region transcription start site region 19747
Tssr19748 2 121303725 to 121303743 18 + TSS region transcription start site region 19748
Tssr19749 2 121305985 to 121305991 6 + TSS region transcription start site region 19749
Ppip5k1 2 121310561 to 121355396 44835 - protein coding gene diphosphoinositol pentakisphosphate kinase 1
Tssr25923 2 121313741 to 121313745 4 - TSS region transcription start site region 25923
Tssr25924 2 121314731 to 121314734 3 - TSS region transcription start site region 25924
Cpgi12155 2 121354698 to 121355549 851 CpG island CpG island 12155
Tssr25925 2 121355066 to 121355084 18 - TSS region transcription start site region 25925
Tssr25926 2 121355320 to 121355367 47 - TSS region transcription start site region 25926
Ckmt1 2 121357751 to 121363737 5986 + protein coding gene creatine kinase, mitochondrial 1, ubiquitous
Tssr19750 2 121357768 to 121357782 14 + TSS region transcription start site region 19750
Gm33947 2 121357815 to 121358271 456 - lncRNA gene predicted gene, 33947
Cpgi12156 2 121358541 to 121359003 462 CpG island CpG island 12156
Tssr19751 2 121358591 to 121358713 122 + TSS region transcription start site region 19751
Tssr622 2 121358881 to 121358884 3 + TSS region transcription start site region 622
Tssr19752 2 121359273 to 121359278 5 + TSS region transcription start site region 19752
Tssr19753 2 121359558 to 121359569 11 + TSS region transcription start site region 19753
Strc 2 121363248 to 121381370 18122 - protein coding gene stereocilin
D2Mit134 2 121363292 to 121363495 203 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 134
Tssr19754 2 121363661 to 121363670 9 + TSS region transcription start site region 19754
Tssr25927 2 121380931 to 121380938 7 - TSS region transcription start site region 25927
Tssr25928 2 121380941 to 121380947 6 - TSS region transcription start site region 25928
Tssr25929 2 121380959 to 121380975 16 - TSS region transcription start site region 25929
Catsper2 2 121392631 to 121413792 21161 - protein coding gene cation channel, sperm associated 2
Gm14001 2 121401145 to 121401391 246 - pseudogene predicted gene 14001
Tssr623 2 121405146 to 121405147 1 + TSS region transcription start site region 623
Gm14000 2 121405241 to 121405473 232 + pseudogene predicted gene 14000
Tssr25930 2 121410004 to 121410009 5 - TSS region transcription start site region 25930
Tssr25931 2 121413051 to 121413055 4 - TSS region transcription start site region 25931
Cpgi12157 2 121413272 to 121414574 1302 CpG island CpG island 12157
Tssr25932 2 121413772 to 121413777 5 - TSS region transcription start site region 25932
Tssr25933 2 121413780 to 121413814 34 - TSS region transcription start site region 25933
Tssr25934 2 121413825 to 121413836 11 - TSS region transcription start site region 25934
Pdia3 2 121413902 to 121438687 24785 + protein coding gene protein disulfide isomerase associated 3
Tssr624 2 121413927 to 121413930 3 + TSS region transcription start site region 624
Tssr19755 2 121413933 to 121413959 26 + TSS region transcription start site region 19755
Tssr19756 2 121413965 to 121413970 5 + TSS region transcription start site region 19756
Tssr19757 2 121414641 to 121414651 10 + TSS region transcription start site region 19757
Tssr19758 2 121422440 to 121422493 53 + TSS region transcription start site region 19758
Tssr19759 2 121424552 to 121424580 28 + TSS region transcription start site region 19759
Tssr19760 2 121424582 to 121424593 11 + TSS region transcription start site region 19760
Tssr19761 2 121429449 to 121429540 91 + TSS region transcription start site region 19761
Tssr19762 2 121430871 to 121430873 2 + TSS region transcription start site region 19762
Tssr19763 2 121431648 to 121431661 13 + TSS region transcription start site region 19763
Tssr19764 2 121432311 to 121432349 38 + TSS region transcription start site region 19764
Tssr19765 2 121433515 to 121433537 22 + TSS region transcription start site region 19765
Tssr19766 2 121433975 to 121434011 36 + TSS region transcription start site region 19766
Tssr19767 2 121435911 to 121435922 11 + TSS region transcription start site region 19767
Tssr19768 2 121436355 to 121436364 9 + TSS region transcription start site region 19768
Tssr19769 2 121437607 to 121437646 39 + TSS region transcription start site region 19769
Tssr19770 2 121437905 to 121437946 41 + TSS region transcription start site region 19770
Ell3 2 121439027 to 121442601 3574 - protein coding gene elongation factor RNA polymerase II-like 3
Cpgi12158 2 121442090 to 121442622 532 CpG island CpG island 12158
Tssr25935 2 121442574 to 121442614 40 - TSS region transcription start site region 25935
Cpgi12159 2 121448805 to 121450326 1521 CpG island CpG island 12159
Serf2 2 121449198 to 121453420 4222 + protein coding gene small EDRK-rich factor 2
Tssr19771 2 121449362 to 121449393 31 + TSS region transcription start site region 19771
Tssr25936 2 121450195 to 121450213 18 - TSS region transcription start site region 25936
Tssr19772 2 121450306 to 121450313 7 + TSS region transcription start site region 19772
Gm22953 2 121450670 to 121450770 100 - miRNA gene predicted gene, 22953
Serinc4 2 121451177 to 121456824 5647 - protein coding gene serine incorporator 4
Tssr25937 2 121456740 to 121456761 21 - TSS region transcription start site region 25937
Cpgi12160 2 121456945 to 121457369 424 CpG island CpG island 12160
Tssr19773 2 121457078 to 121457127 49 + TSS region transcription start site region 19773
Hypk 2 121457088 to 121458440 1352 + protein coding gene huntingtin interacting protein K
Tssr19774 2 121457437 to 121457491 54 + TSS region transcription start site region 19774
Mfap1b 2 121461666 to 121474023 12357 - protein coding gene microfibrillar-associated protein 1B
Cpgi12161 2 121473953 to 121474156 203 CpG island CpG island 12161
Tssr25938 2 121473993 to 121474037 44 - TSS region transcription start site region 25938
Tssr25939 2 121474041 to 121474048 7 - TSS region transcription start site region 25939
Gm14017 2 121481130 to 121481515 385 + pseudogene predicted gene 14017
Gm14018 2 121485432 to 121491512 6080 + pseudogene predicted gene 14018
Mfap1a 2 121492681 to 121506656 13975 - protein coding gene microfibrillar-associated protein 1A
Cpgi12162 2 121506581 to 121506854 273 CpG island CpG island 12162
Tssr25940 2 121506639 to 121506667 28 - TSS region transcription start site region 25940
Tssr19775 2 121506702 to 121506709 7 + TSS region transcription start site region 19775
Tssr19776 2 121506715 to 121506733 18 + TSS region transcription start site region 19776
Wdr76 2 121506723 to 121544860 38137 + protein coding gene WD repeat domain 76
Tssr19777 2 121506748 to 121506792 44 + TSS region transcription start site region 19777