Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:120487993-120898009

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Capn3 2 120463593 to 120504919 41326 + protein coding gene calpain 3
Tssr19701 2 120490083 to 120490113 30 + TSS region transcription start site region 19701
Tssr19702 2 120500054 to 120500066 12 + TSS region transcription start site region 19702
Tssr19703 2 120500457 to 120500468 11 + TSS region transcription start site region 19703
Tssr19704 2 120501211 to 120501253 42 + TSS region transcription start site region 19704
Tssr620 2 120501260 to 120501270 10 + TSS region transcription start site region 620
Tssr19705 2 120501307 to 120501335 28 + TSS region transcription start site region 19705
Tssr19706 2 120501818 to 120501829 11 + TSS region transcription start site region 19706
Tssr19707 2 120502319 to 120502332 13 + TSS region transcription start site region 19707
Tssr19708 2 120502510 to 120502532 22 + TSS region transcription start site region 19708
Zfp106 2 120506830 to 120563853 57023 - protein coding gene zinc finger protein 106
Gm26899 2 120532904 to 120539846 6942 + lincRNA gene predicted gene, 26899
Tssr25865 2 120534878 to 120534912 34 - TSS region transcription start site region 25865
Tssr25866 2 120539483 to 120539496 13 - TSS region transcription start site region 25866
Tssr25867 2 120539852 to 120539866 14 - TSS region transcription start site region 25867
D2Dcr28 2 120545224 to 120545575 351 DNA segment DNA segment, Chr 2, Derry C. Roopenian 28
Cpgi12141 2 120563331 to 120564019 688 CpG island CpG island 12141
Tssr25868 2 120563744 to 120563755 11 - TSS region transcription start site region 25868
Tssr25869 2 120563795 to 120563878 83 - TSS region transcription start site region 25869
Cpgi12142 2 120567480 to 120568148 668 CpG island CpG island 12142
Tssr19709 2 120567652 to 120567678 26 + TSS region transcription start site region 19709
Snap23 2 120567671 to 120601255 33584 + protein coding gene synaptosomal-associated protein 23
Tssr19710 2 120567687 to 120567726 39 + TSS region transcription start site region 19710
Tssr25870 2 120568109 to 120568118 9 - TSS region transcription start site region 25870
D2Dcr29 2 120574683 to 120574969 286 DNA segment DNA segment, Chr 2, Derry C. Roopenian 29
Tssr19711 2 120587769 to 120587772 3 + TSS region transcription start site region 19711
Tssr19712 2 120594839 to 120594861 22 + TSS region transcription start site region 19712
Lrrc57 2 120604238 to 120609508 5270 - protein coding gene leucine rich repeat containing 57
Tssr25871 2 120604645 to 120604650 5 - TSS region transcription start site region 25871
Cpgi12143 2 120608875 to 120609775 900 CpG island CpG island 12143
Tssr25872 2 120609283 to 120609317 34 - TSS region transcription start site region 25872
Tssr25873 2 120609319 to 120609380 61 - TSS region transcription start site region 25873
Tssr19713 2 120609377 to 120609391 14 + TSS region transcription start site region 19713
Haus2 2 120609383 to 120621560 12177 + protein coding gene HAUS augmin-like complex, subunit 2
Tssr19714 2 120609397 to 120609400 3 + TSS region transcription start site region 19714
Tssr19715 2 120609402 to 120609442 40 + TSS region transcription start site region 19715
Tssr25874 2 120609493 to 120609496 3 - TSS region transcription start site region 25874
Tssr25875 2 120609500 to 120609524 24 - TSS region transcription start site region 25875
Tssr25876 2 120609536 to 120609547 11 - TSS region transcription start site region 25876
Cpgi12144 2 120628841 to 120629345 504 CpG island CpG island 12144
Stard9 2 120629091 to 120729033 99942 + protein coding gene START domain containing 9
Tssr19716 2 120629113 to 120629127 14 + TSS region transcription start site region 19716
D2Dcr30 2 120633030 to 120633287 257 DNA segment DNA segment, Chr 2, Derry C. Roopenian 30
n-R5s205 2 120640711 to 120640835 124 - rRNA gene nuclear encoded rRNA 5S 205
Gm29693 2 120679930 to 120685035 5105 + pseudogene predicted gene, 29693
Tssr19717 2 120692584 to 120692591 7 + TSS region transcription start site region 19717
Tssr25877 2 120692898 to 120692905 7 - TSS region transcription start site region 25877
Tssr19718 2 120692993 to 120693009 16 + TSS region transcription start site region 19718
D2Dcr32 2 120704127 to 120704458 331 DNA segment DNA segment, Chr 2, Derry C. Roopenian 32
Gm46789 2 120712230 to 120715938 3708 - lncRNA gene predicted gene, 46789
Cdan1 2 120716154 to 120731517 15363 - protein coding gene congenital dyserythropoietic anemia, type I (human)
Cpgi12145 2 120730280 to 120731818 1538 CpG island CpG island 12145
Tssr25878 2 120731198 to 120731211 13 - TSS region transcription start site region 25878
Tssr25879 2 120731342 to 120731349 7 - TSS region transcription start site region 25879
Tssr25880 2 120731503 to 120731534 31 - TSS region transcription start site region 25880
Tssr25881 2 120731741 to 120731748 7 - TSS region transcription start site region 25881
Ttbk2 2 120732816 to 120850584 117768 - protein coding gene tau tubulin kinase 2
D2Dcr35 2 120781622 to 120782054 432 DNA segment DNA segment, Chr 2, Derry C. Roopenian 35
B930063I24Rik 2 120796467 to 120801492 5025 unclassified gene RIKEN cDNA B930063I24 gene
Cpgi12146 2 120849797 to 120850939 1142 CpG island CpG island 12146
Tssr19719 2 120850119 to 120850135 16 + TSS region transcription start site region 19719
Tssr25882 2 120850369 to 120850387 18 - TSS region transcription start site region 25882
Tssr25883 2 120850389 to 120850417 28 - TSS region transcription start site region 25883
Tssr25884 2 120850428 to 120850445 17 - TSS region transcription start site region 25884
Tssr25885 2 120850598 to 120850603 5 - TSS region transcription start site region 25885
Tssr25886 2 120850607 to 120850618 11 - TSS region transcription start site region 25886
Tssr25887 2 120850623 to 120850635 12 - TSS region transcription start site region 25887
Tssr19720 2 120850671 to 120850724 53 + TSS region transcription start site region 19720
AV039307 2 120850705 to 120866689 15984 + lncRNA gene expressed sequence AV039307
Ubr1 2 120860269 to 120970715 110446 - protein coding gene ubiquitin protein ligase E3 component n-recognin 1