Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:120350054-120650066

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vps39 2 120316461 to 120353137 36676 - protein coding gene VPS39 HOPS complex subunit
Tssr25853 2 120352022 to 120352030 8 - TSS region transcription start site region 25853
Cpgi12139 2 120352630 to 120353218 588 CpG island CpG island 12139
Tssr25854 2 120352972 to 120352983 11 - TSS region transcription start site region 25854
Tssr25855 2 120352985 to 120352996 11 - TSS region transcription start site region 25855
Tssr25856 2 120352999 to 120353021 22 - TSS region transcription start site region 25856
Tssr25857 2 120353094 to 120353143 49 - TSS region transcription start site region 25857
Tmem87a 2 120355312 to 120404113 48801 - protein coding gene transmembrane protein 87A
Tssr25858 2 120355488 to 120355491 3 - TSS region transcription start site region 25858
Tssr25859 2 120368792 to 120368795 3 - TSS region transcription start site region 25859
D2Dcr27 2 120380999 to 120381277 278 DNA segment DNA segment, Chr 2, Derry C. Roopenian 27
Cpgi12140 2 120403723 to 120404443 720 CpG island CpG island 12140
Ganc 2 120403896 to 120460866 56970 + protein coding gene glucosidase, alpha; neutral C
Tssr25860 2 120404058 to 120404092 34 - TSS region transcription start site region 25860
Tssr25861 2 120404093 to 120404101 8 - TSS region transcription start site region 25861
Tssr25862 2 120404103 to 120404115 12 - TSS region transcription start site region 25862
Tssr19684 2 120404167 to 120404257 90 + TSS region transcription start site region 19684
Tssr25863 2 120404607 to 120404653 46 - TSS region transcription start site region 25863
Tssr25864 2 120404688 to 120404703 15 - TSS region transcription start site region 25864
Tssr19685 2 120404716 to 120404746 30 + TSS region transcription start site region 19685
Tssr19686 2 120404757 to 120404785 28 + TSS region transcription start site region 19686
Tssr19687 2 120404787 to 120404831 44 + TSS region transcription start site region 19687
Tssr19688 2 120406104 to 120406120 16 + TSS region transcription start site region 19688
Tssr19689 2 120411485 to 120411490 5 + TSS region transcription start site region 19689
Tssr19690 2 120450732 to 120450743 11 + TSS region transcription start site region 19690
Tssr19691 2 120450888 to 120450917 29 + TSS region transcription start site region 19691
4931402G19Rik 2 120455698 to 120469367 13669 - lncRNA gene RIKEN cDNA 4931402G19 gene
Tssr19692 2 120461014 to 120461025 11 + TSS region transcription start site region 19692
Tssr19693 2 120463566 to 120463594 28 + TSS region transcription start site region 19693
Capn3 2 120463593 to 120504919 41326 + protein coding gene calpain 3
Tssr19694 2 120476850 to 120476851 1 + TSS region transcription start site region 19694
Tssr19695 2 120476901 to 120476904 3 + TSS region transcription start site region 19695
Tssr19696 2 120476911 to 120476924 13 + TSS region transcription start site region 19696
Tssr619 2 120480292 to 120480307 15 + TSS region transcription start site region 619
Tssr19697 2 120481949 to 120481975 26 + TSS region transcription start site region 19697
Tssr19698 2 120484331 to 120484342 11 + TSS region transcription start site region 19698
Tssr19699 2 120484343 to 120484355 12 + TSS region transcription start site region 19699
Tssr19700 2 120484359 to 120484374 15 + TSS region transcription start site region 19700
Tssr19701 2 120490083 to 120490113 30 + TSS region transcription start site region 19701
Tssr19702 2 120500054 to 120500066 12 + TSS region transcription start site region 19702
Tssr19703 2 120500457 to 120500468 11 + TSS region transcription start site region 19703
Tssr19704 2 120501211 to 120501253 42 + TSS region transcription start site region 19704
Tssr620 2 120501260 to 120501270 10 + TSS region transcription start site region 620
Tssr19705 2 120501307 to 120501335 28 + TSS region transcription start site region 19705
Tssr19706 2 120501818 to 120501829 11 + TSS region transcription start site region 19706
Tssr19707 2 120502319 to 120502332 13 + TSS region transcription start site region 19707
Tssr19708 2 120502510 to 120502532 22 + TSS region transcription start site region 19708
Zfp106 2 120506830 to 120563853 57023 - protein coding gene zinc finger protein 106
Gm26899 2 120532904 to 120539846 6942 + lincRNA gene predicted gene, 26899
Tssr25865 2 120534878 to 120534912 34 - TSS region transcription start site region 25865
Tssr25866 2 120539483 to 120539496 13 - TSS region transcription start site region 25866
Tssr25867 2 120539852 to 120539866 14 - TSS region transcription start site region 25867
D2Dcr28 2 120545224 to 120545575 351 DNA segment DNA segment, Chr 2, Derry C. Roopenian 28
Cpgi12141 2 120563331 to 120564019 688 CpG island CpG island 12141
Tssr25868 2 120563744 to 120563755 11 - TSS region transcription start site region 25868
Tssr25869 2 120563795 to 120563878 83 - TSS region transcription start site region 25869
Cpgi12142 2 120567480 to 120568148 668 CpG island CpG island 12142
Tssr19709 2 120567652 to 120567678 26 + TSS region transcription start site region 19709
Snap23 2 120567671 to 120601255 33584 + protein coding gene synaptosomal-associated protein 23
Tssr19710 2 120567687 to 120567726 39 + TSS region transcription start site region 19710
Tssr25870 2 120568109 to 120568118 9 - TSS region transcription start site region 25870
D2Dcr29 2 120574683 to 120574969 286 DNA segment DNA segment, Chr 2, Derry C. Roopenian 29
Tssr19711 2 120587769 to 120587772 3 + TSS region transcription start site region 19711
Tssr19712 2 120594839 to 120594861 22 + TSS region transcription start site region 19712
Lrrc57 2 120604238 to 120609508 5270 - protein coding gene leucine rich repeat containing 57
Tssr25871 2 120604645 to 120604650 5 - TSS region transcription start site region 25871
Cpgi12143 2 120608875 to 120609775 900 CpG island CpG island 12143
Tssr25872 2 120609283 to 120609317 34 - TSS region transcription start site region 25872
Tssr25873 2 120609319 to 120609380 61 - TSS region transcription start site region 25873
Tssr19713 2 120609377 to 120609391 14 + TSS region transcription start site region 19713
Haus2 2 120609383 to 120621560 12177 + protein coding gene HAUS augmin-like complex, subunit 2
Tssr19714 2 120609397 to 120609400 3 + TSS region transcription start site region 19714
Tssr19715 2 120609402 to 120609442 40 + TSS region transcription start site region 19715
Tssr25874 2 120609493 to 120609496 3 - TSS region transcription start site region 25874
Tssr25875 2 120609500 to 120609524 24 - TSS region transcription start site region 25875
Tssr25876 2 120609536 to 120609547 11 - TSS region transcription start site region 25876
Cpgi12144 2 120628841 to 120629345 504 CpG island CpG island 12144
Stard9 2 120629091 to 120729033 99942 + protein coding gene START domain containing 9
Tssr19716 2 120629113 to 120629127 14 + TSS region transcription start site region 19716
D2Dcr30 2 120633030 to 120633287 257 DNA segment DNA segment, Chr 2, Derry C. Roopenian 30
n-R5s205 2 120640711 to 120640835 124 - rRNA gene nuclear encoded rRNA 5S 205