Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:120047671-121121255

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173 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sptbn5 2 120041493 to 120085693 44200 - protein coding gene spectrin beta, non-erythrocytic 5
Cpgi12136 2 120076094 to 120076749 655 CpG island CpG island 12136
Ehd4 2 120089487 to 120154575 65088 - protein coding gene EH-domain containing 4
Tssr25834 2 120090071 to 120090087 16 - TSS region transcription start site region 25834
Tssr25835 2 120091008 to 120091022 14 - TSS region transcription start site region 25835
Tssr25836 2 120137467 to 120137493 26 - TSS region transcription start site region 25836
Tssr25837 2 120137603 to 120137609 6 - TSS region transcription start site region 25837
Cpgi12137 2 120153770 to 120154985 1215 CpG island CpG island 12137
Tssr25838 2 120154486 to 120154498 12 - TSS region transcription start site region 25838
Tssr25839 2 120154512 to 120154590 78 - TSS region transcription start site region 25839
Tssr25840 2 120154600 to 120154611 11 - TSS region transcription start site region 25840
Pla2g4e 2 120166412 to 120245335 78923 - protein coding gene phospholipase A2, group IVE
Tssr618 2 120186763 to 120186765 2 + TSS region transcription start site region 618
Tssr25841 2 120207223 to 120207238 15 - TSS region transcription start site region 25841
Gm13997 2 120244921 to 120245598 677 - unclassified non-coding RNA gene predicted gene 13997
Cpgi12138 2 120244957 to 120245304 347 CpG island CpG island 12138
Tssr25842 2 120245055 to 120245071 16 - TSS region transcription start site region 25842
Tssr25843 2 120245077 to 120245105 28 - TSS region transcription start site region 25843
Tssr25844 2 120245123 to 120245143 20 - TSS region transcription start site region 25844
Tssr25845 2 120245157 to 120245246 89 - TSS region transcription start site region 25845
Tssr25846 2 120252267 to 120252294 27 - TSS region transcription start site region 25846
Pla2g4d 2 120265866 to 120289069 23203 - protein coding gene phospholipase A2, group IVD
Tssr25847 2 120289063 to 120289074 11 - TSS region transcription start site region 25847
Pla2g4f 2 120299957 to 120314165 14208 - protein coding gene phospholipase A2, group IVF
D2Dcr25 2 120301119 to 120301342 223 DNA segment DNA segment, Chr 2, Derry C. Roopenian 25
Tssr25848 2 120314081 to 120314106 25 - TSS region transcription start site region 25848
Tssr25849 2 120314115 to 120314136 21 - TSS region transcription start site region 25849
Tssr25850 2 120314141 to 120314172 31 - TSS region transcription start site region 25850
Vps39 2 120316461 to 120353137 36676 - protein coding gene VPS39 HOPS complex subunit
Tssr25851 2 120328449 to 120328458 9 - TSS region transcription start site region 25851
Tssr25852 2 120328681 to 120328698 17 - TSS region transcription start site region 25852
Tssr25853 2 120352022 to 120352030 8 - TSS region transcription start site region 25853
Cpgi12139 2 120352630 to 120353218 588 CpG island CpG island 12139
Tssr25854 2 120352972 to 120352983 11 - TSS region transcription start site region 25854
Tssr25855 2 120352985 to 120352996 11 - TSS region transcription start site region 25855
Tssr25856 2 120352999 to 120353021 22 - TSS region transcription start site region 25856
Tssr25857 2 120353094 to 120353143 49 - TSS region transcription start site region 25857
Tmem87a 2 120355312 to 120404113 48801 - protein coding gene transmembrane protein 87A
Tssr25858 2 120355488 to 120355491 3 - TSS region transcription start site region 25858
Tssr25859 2 120368792 to 120368795 3 - TSS region transcription start site region 25859
D2Dcr27 2 120380999 to 120381277 278 DNA segment DNA segment, Chr 2, Derry C. Roopenian 27
Cpgi12140 2 120403723 to 120404443 720 CpG island CpG island 12140
Ganc 2 120403896 to 120460866 56970 + protein coding gene glucosidase, alpha; neutral C
Tssr25860 2 120404058 to 120404092 34 - TSS region transcription start site region 25860
Tssr25861 2 120404093 to 120404101 8 - TSS region transcription start site region 25861
Tssr25862 2 120404103 to 120404115 12 - TSS region transcription start site region 25862
Tssr19684 2 120404167 to 120404257 90 + TSS region transcription start site region 19684
Tssr25863 2 120404607 to 120404653 46 - TSS region transcription start site region 25863
Tssr25864 2 120404688 to 120404703 15 - TSS region transcription start site region 25864
Tssr19685 2 120404716 to 120404746 30 + TSS region transcription start site region 19685
Tssr19686 2 120404757 to 120404785 28 + TSS region transcription start site region 19686
Tssr19687 2 120404787 to 120404831 44 + TSS region transcription start site region 19687
Tssr19688 2 120406104 to 120406120 16 + TSS region transcription start site region 19688
Tssr19689 2 120411485 to 120411490 5 + TSS region transcription start site region 19689
Tssr19690 2 120450732 to 120450743 11 + TSS region transcription start site region 19690
Tssr19691 2 120450888 to 120450917 29 + TSS region transcription start site region 19691
4931402G19Rik 2 120455698 to 120469367 13669 - lncRNA gene RIKEN cDNA 4931402G19 gene
Tssr19692 2 120461014 to 120461025 11 + TSS region transcription start site region 19692
Tssr19693 2 120463566 to 120463594 28 + TSS region transcription start site region 19693
Capn3 2 120463593 to 120504919 41326 + protein coding gene calpain 3
Tssr19694 2 120476850 to 120476851 1 + TSS region transcription start site region 19694
Tssr19695 2 120476901 to 120476904 3 + TSS region transcription start site region 19695
Tssr19696 2 120476911 to 120476924 13 + TSS region transcription start site region 19696
Tssr619 2 120480292 to 120480307 15 + TSS region transcription start site region 619
Tssr19697 2 120481949 to 120481975 26 + TSS region transcription start site region 19697
Tssr19698 2 120484331 to 120484342 11 + TSS region transcription start site region 19698
Tssr19699 2 120484343 to 120484355 12 + TSS region transcription start site region 19699
Tssr19700 2 120484359 to 120484374 15 + TSS region transcription start site region 19700
Tssr19701 2 120490083 to 120490113 30 + TSS region transcription start site region 19701
Tssr19702 2 120500054 to 120500066 12 + TSS region transcription start site region 19702
Tssr19703 2 120500457 to 120500468 11 + TSS region transcription start site region 19703
Tssr19704 2 120501211 to 120501253 42 + TSS region transcription start site region 19704
Tssr620 2 120501260 to 120501270 10 + TSS region transcription start site region 620
Tssr19705 2 120501307 to 120501335 28 + TSS region transcription start site region 19705
Tssr19706 2 120501818 to 120501829 11 + TSS region transcription start site region 19706
Tssr19707 2 120502319 to 120502332 13 + TSS region transcription start site region 19707
Tssr19708 2 120502510 to 120502532 22 + TSS region transcription start site region 19708
Zfp106 2 120506830 to 120563853 57023 - protein coding gene zinc finger protein 106
Gm26899 2 120532904 to 120539846 6942 + lincRNA gene predicted gene, 26899
Tssr25865 2 120534878 to 120534912 34 - TSS region transcription start site region 25865
Tssr25866 2 120539483 to 120539496 13 - TSS region transcription start site region 25866
Tssr25867 2 120539852 to 120539866 14 - TSS region transcription start site region 25867
D2Dcr28 2 120545224 to 120545575 351 DNA segment DNA segment, Chr 2, Derry C. Roopenian 28
Cpgi12141 2 120563331 to 120564019 688 CpG island CpG island 12141
Tssr25868 2 120563744 to 120563755 11 - TSS region transcription start site region 25868
Tssr25869 2 120563795 to 120563878 83 - TSS region transcription start site region 25869
Cpgi12142 2 120567480 to 120568148 668 CpG island CpG island 12142
Tssr19709 2 120567652 to 120567678 26 + TSS region transcription start site region 19709
Snap23 2 120567671 to 120601255 33584 + protein coding gene synaptosomal-associated protein 23
Tssr19710 2 120567687 to 120567726 39 + TSS region transcription start site region 19710
Tssr25870 2 120568109 to 120568118 9 - TSS region transcription start site region 25870
D2Dcr29 2 120574683 to 120574969 286 DNA segment DNA segment, Chr 2, Derry C. Roopenian 29
Tssr19711 2 120587769 to 120587772 3 + TSS region transcription start site region 19711
Tssr19712 2 120594839 to 120594861 22 + TSS region transcription start site region 19712
Lrrc57 2 120604238 to 120609508 5270 - protein coding gene leucine rich repeat containing 57
Tssr25871 2 120604645 to 120604650 5 - TSS region transcription start site region 25871
Cpgi12143 2 120608875 to 120609775 900 CpG island CpG island 12143
Tssr25872 2 120609283 to 120609317 34 - TSS region transcription start site region 25872
Tssr25873 2 120609319 to 120609380 61 - TSS region transcription start site region 25873
Tssr19713 2 120609377 to 120609391 14 + TSS region transcription start site region 19713
Haus2 2 120609383 to 120621560 12177 + protein coding gene HAUS augmin-like complex, subunit 2
Tssr19714 2 120609397 to 120609400 3 + TSS region transcription start site region 19714
Tssr19715 2 120609402 to 120609442 40 + TSS region transcription start site region 19715
Tssr25874 2 120609493 to 120609496 3 - TSS region transcription start site region 25874
Tssr25875 2 120609500 to 120609524 24 - TSS region transcription start site region 25875
Tssr25876 2 120609536 to 120609547 11 - TSS region transcription start site region 25876
Cpgi12144 2 120628841 to 120629345 504 CpG island CpG island 12144
Stard9 2 120629091 to 120729033 99942 + protein coding gene START domain containing 9
Tssr19716 2 120629113 to 120629127 14 + TSS region transcription start site region 19716
D2Dcr30 2 120633030 to 120633287 257 DNA segment DNA segment, Chr 2, Derry C. Roopenian 30
n-R5s205 2 120640711 to 120640835 124 - rRNA gene nuclear encoded rRNA 5S 205
Gm29693 2 120679930 to 120685035 5105 + pseudogene predicted gene, 29693
Tssr19717 2 120692584 to 120692591 7 + TSS region transcription start site region 19717
Tssr25877 2 120692898 to 120692905 7 - TSS region transcription start site region 25877
Tssr19718 2 120692993 to 120693009 16 + TSS region transcription start site region 19718
D2Dcr32 2 120704127 to 120704458 331 DNA segment DNA segment, Chr 2, Derry C. Roopenian 32
Gm46789 2 120712230 to 120715938 3708 - lncRNA gene predicted gene, 46789
Cdan1 2 120716154 to 120731517 15363 - protein coding gene congenital dyserythropoietic anemia, type I (human)
Cpgi12145 2 120730280 to 120731818 1538 CpG island CpG island 12145
Tssr25878 2 120731198 to 120731211 13 - TSS region transcription start site region 25878
Tssr25879 2 120731342 to 120731349 7 - TSS region transcription start site region 25879
Tssr25880 2 120731503 to 120731534 31 - TSS region transcription start site region 25880
Tssr25881 2 120731741 to 120731748 7 - TSS region transcription start site region 25881
Ttbk2 2 120732816 to 120850584 117768 - protein coding gene tau tubulin kinase 2
D2Dcr35 2 120781622 to 120782054 432 DNA segment DNA segment, Chr 2, Derry C. Roopenian 35
B930063I24Rik 2 120796467 to 120801492 5025 unclassified gene RIKEN cDNA B930063I24 gene
Cpgi12146 2 120849797 to 120850939 1142 CpG island CpG island 12146
Tssr19719 2 120850119 to 120850135 16 + TSS region transcription start site region 19719
Tssr25882 2 120850369 to 120850387 18 - TSS region transcription start site region 25882
Tssr25883 2 120850389 to 120850417 28 - TSS region transcription start site region 25883
Tssr25884 2 120850428 to 120850445 17 - TSS region transcription start site region 25884
Tssr25885 2 120850598 to 120850603 5 - TSS region transcription start site region 25885
Tssr25886 2 120850607 to 120850618 11 - TSS region transcription start site region 25886
Tssr25887 2 120850623 to 120850635 12 - TSS region transcription start site region 25887
Tssr19720 2 120850671 to 120850724 53 + TSS region transcription start site region 19720
AV039307 2 120850705 to 120866689 15984 + lncRNA gene expressed sequence AV039307
Ubr1 2 120860269 to 120970715 110446 - protein coding gene ubiquitin protein ligase E3 component n-recognin 1
Cpgi12147 2 120970299 to 120970966 667 CpG island CpG island 12147
Tssr25888 2 120970597 to 120970636 39 - TSS region transcription start site region 25888
Tssr25889 2 120970646 to 120970703 57 - TSS region transcription start site region 25889
Tssr25890 2 120970706 to 120970761 55 - TSS region transcription start site region 25890
Tssr19721 2 120971648 to 120971652 4 + TSS region transcription start site region 19721
Cpgi12148 2 120976942 to 120977881 939 CpG island CpG island 12148
Tmem62 2 120977017 to 121007852 30835 + protein coding gene transmembrane protein 62
Tssr19722 2 120977081 to 120977107 26 + TSS region transcription start site region 19722
Tssr19723 2 120977148 to 120977185 37 + TSS region transcription start site region 19723
Tssr19724 2 120977248 to 120977308 60 + TSS region transcription start site region 19724
Gm44325 2 120977651 to 120977727 76 - miRNA gene predicted gene, 44325
Gm22865 2 121004089 to 121004302 213 + snoRNA gene predicted gene, 22865
Rnu3b-ps2 2 121004089 to 121004303 214 + pseudogene U3B small nuclear RNA pseudogene 2
Cpgi12149 2 121008275 to 121008751 476 CpG island CpG island 12149
Ccndbp1 2 121008403 to 121016904 8501 + protein coding gene cyclin D-type binding-protein 1
Tssr19725 2 121008416 to 121008481 65 + TSS region transcription start site region 19725
Tssr19726 2 121008488 to 121008506 18 + TSS region transcription start site region 19726
Tssr19727 2 121015936 to 121015940 4 + TSS region transcription start site region 19727
Tssr19728 2 121016398 to 121016423 25 + TSS region transcription start site region 19728
Epb42 2 121017891 to 121036877 18986 - protein coding gene erythrocyte membrane protein band 4.2
Taste2 2 121017891 to 121036877 18986 QTL taste-saccharin preference 2
Tssr25891 2 121025742 to 121025744 2 - TSS region transcription start site region 25891
Tssr25892 2 121036674 to 121036689 15 - TSS region transcription start site region 25892
Tssr25893 2 121036695 to 121036735 40 - TSS region transcription start site region 25893
Tssr25894 2 121036750 to 121036774 24 - TSS region transcription start site region 25894
Tssr25895 2 121037048 to 121037067 19 - TSS region transcription start site region 25895
Tgm5 2 121046111 to 121085759 39648 - protein coding gene transglutaminase 5
Gm14213 2 121049799 to 121050566 767 + pseudogene predicted gene 14213
Tssr25896 2 121085733 to 121085744 11 - TSS region transcription start site region 25896
Tssr25897 2 121085746 to 121085753 7 - TSS region transcription start site region 25897
Tssr25898 2 121085778 to 121085794 16 - TSS region transcription start site region 25898
Tssr25899 2 121085835 to 121085846 11 - TSS region transcription start site region 25899
Tgm7 2 121093565 to 121109795 16230 - protein coding gene transglutaminase 7
Tssr25900 2 121101160 to 121101165 5 - TSS region transcription start site region 25900
Tssr25901 2 121116438 to 121116447 9 - TSS region transcription start site region 25901
Tssr25902 2 121116454 to 121116465 11 - TSS region transcription start site region 25902