Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:119727740-119888104

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rtf1 2 119675068 to 119735407 60339 + protein coding gene RTF1, Paf1/RNA polymerase II complex component
Tssr19655 2 119733447 to 119733449 2 + TSS region transcription start site region 19655
Gm25857 2 119740828 to 119740956 128 - snoRNA gene predicted gene, 25857
Cpgi12126 2 119741680 to 119744940 3260 CpG island CpG island 12126
Tssr19656 2 119742289 to 119742305 16 + TSS region transcription start site region 19656
Tssr19657 2 119742306 to 119742331 25 + TSS region transcription start site region 19657
Itpka 2 119742337 to 119751253 8916 + protein coding gene inositol 1,4,5-trisphosphate 3-kinase A
Tssr19658 2 119742344 to 119742355 11 + TSS region transcription start site region 19658
Tssr25827 2 119743160 to 119743205 45 - TSS region transcription start site region 25827
Cpgi12127 2 119749282 to 119749898 616 CpG island CpG island 12127
Ltk 2 119751326 to 119760431 9105 - protein coding gene leukocyte tyrosine kinase
Cpgi12128 2 119757554 to 119759445 1891 CpG island CpG island 12128
Tssr25828 2 119760409 to 119760421 12 - TSS region transcription start site region 25828
Rpap1 2 119763959 to 119787537 23578 - protein coding gene RNA polymerase II associated protein 1
Cpgi12129 2 119787225 to 119787854 629 CpG island CpG island 12129
Tssr25829 2 119787504 to 119787533 29 - TSS region transcription start site region 25829
Gm23814 2 119793942 to 119794043 101 - snRNA gene predicted gene, 23814
Tyro3 2 119797740 to 119818104 20364 + protein coding gene TYRO3 protein tyrosine kinase 3
Tssr19659 2 119798478 to 119798489 11 + TSS region transcription start site region 19659
Cpgi12130 2 119799097 to 119800466 1369 CpG island CpG island 12130
Tssr19660 2 119799542 to 119799572 30 + TSS region transcription start site region 19660
Tssr19661 2 119799574 to 119799592 18 + TSS region transcription start site region 19661
Tssr19662 2 119799725 to 119799760 35 + TSS region transcription start site region 19662
Tssr19663 2 119799764 to 119799785 21 + TSS region transcription start site region 19663
Tssr617 2 119826368 to 119826383 15 - TSS region transcription start site region 617
Tssr19664 2 119843918 to 119843957 39 + TSS region transcription start site region 19664
Cpgi12131 2 119872276 to 119873525 1249 CpG island CpG island 12131
Tssr19665 2 119872480 to 119872491 11 + TSS region transcription start site region 19665
Tssr19666 2 119872505 to 119872555 50 + TSS region transcription start site region 19666
Tssr19667 2 119872792 to 119872835 43 + TSS region transcription start site region 19667
Tssr19668 2 119872840 to 119872862 22 + TSS region transcription start site region 19668
Gm13998 2 119878069 to 119878403 334 - pseudogene predicted gene 13998
Tssr25830 2 119878453 to 119878455 2 - TSS region transcription start site region 25830