Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:119512572-119812953

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm33412 2 119508224 to 119516917 8693 + lncRNA gene predicted gene, 33412
Exd1 2 119516505 to 119547627 31122 - protein coding gene exonuclease 3'-5' domain containing 1
D2Dcr64 2 119524913 to 119525034 121 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 64
pta 2 119524913 to 125725738 6200825 heritable phenotypic marker persistent truncus arteriosus
D2Mit395 2 119524913 to 119525037 124 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 395
Trmq3 2 119525037 to 60690268 -58834769 QTL T cell ratio modifier QTL 3
Tssr25823 2 119546883 to 119546888 5 - TSS region transcription start site region 25823
Cpgi12121 2 119546914 to 119548198 1284 CpG island CpG island 12121
Tssr19637 2 119547675 to 119547689 14 + TSS region transcription start site region 19637
Tssr19638 2 119547701 to 119547762 61 + TSS region transcription start site region 19638
Chp1 2 119547707 to 119587024 39317 + protein coding gene calcineurin-like EF hand protein 1
Tssr19639 2 119547765 to 119547802 37 + TSS region transcription start site region 19639
Tssr19640 2 119547803 to 119547816 13 + TSS region transcription start site region 19640
Tssr19641 2 119584565 to 119584584 19 + TSS region transcription start site region 19641
Cpgi12122 2 119594173 to 119594857 684 CpG island CpG island 12122
Tssr19642 2 119594288 to 119594332 44 + TSS region transcription start site region 19642
1700020I14Rik 2 119594296 to 119600746 6450 + lincRNA gene RIKEN cDNA 1700020I14 gene
Tssr19643 2 119599959 to 119599964 5 + TSS region transcription start site region 19643
Tssr19644 2 119604751 to 119604773 22 + TSS region transcription start site region 19644
Oip5 2 119609512 to 119618469 8957 - protein coding gene Opa interacting protein 5
Cpgi12123 2 119617972 to 119618929 957 CpG island CpG island 12123
Nusap1 2 119618298 to 119650165 31867 + protein coding gene nucleolar and spindle associated protein 1
Tssr25824 2 119618455 to 119618510 55 - TSS region transcription start site region 25824
Tssr19645 2 119618721 to 119618737 16 + TSS region transcription start site region 19645
n-R5s204 2 119631118 to 119631236 118 + rRNA gene nuclear encoded rRNA 5S 204
Tssr19646 2 119650412 to 119650416 4 + TSS region transcription start site region 19646
Ndufaf1 2 119655446 to 119662827 7381 - protein coding gene NADH:ubiquinone oxidoreductase complex assembly factor 1
Cpgi12124 2 119662572 to 119662953 381 CpG island CpG island 12124
Tssr25825 2 119662756 to 119662835 79 - TSS region transcription start site region 25825
H3f3c 2 119665626 to 119666036 410 - pseudogene H3 histone, family 3C
Tssr25826 2 119666150 to 119666153 3 - TSS region transcription start site region 25826
Gm14383 2 119669159 to 119669544 385 + pseudogene predicted gene 14383
Cpgi12125 2 119674624 to 119675735 1111 CpG island CpG island 12125
Tssr19647 2 119675062 to 119675095 33 + TSS region transcription start site region 19647
Rtf1 2 119675068 to 119735407 60339 + protein coding gene RTF1, Paf1/RNA polymerase II complex component
Tssr19648 2 119692153 to 119692186 33 + TSS region transcription start site region 19648
Tssr19649 2 119695017 to 119695031 14 + TSS region transcription start site region 19649
Tssr19650 2 119695050 to 119695062 12 + TSS region transcription start site region 19650
Tssr19651 2 119705587 to 119705603 16 + TSS region transcription start site region 19651
Tssr19652 2 119711472 to 119711482 10 + TSS region transcription start site region 19652
Tssr19653 2 119711485 to 119711495 10 + TSS region transcription start site region 19653
Tssr19654 2 119715391 to 119715428 37 + TSS region transcription start site region 19654
Tssr19655 2 119733447 to 119733449 2 + TSS region transcription start site region 19655
Gm25857 2 119740828 to 119740956 128 - snoRNA gene predicted gene, 25857
Cpgi12126 2 119741680 to 119744940 3260 CpG island CpG island 12126
Tssr19656 2 119742289 to 119742305 16 + TSS region transcription start site region 19656
Tssr19657 2 119742306 to 119742331 25 + TSS region transcription start site region 19657
Itpka 2 119742337 to 119751253 8916 + protein coding gene inositol 1,4,5-trisphosphate 3-kinase A
Tssr19658 2 119742344 to 119742355 11 + TSS region transcription start site region 19658
Tssr25827 2 119743160 to 119743205 45 - TSS region transcription start site region 25827
Cpgi12127 2 119749282 to 119749898 616 CpG island CpG island 12127
Ltk 2 119751326 to 119760431 9105 - protein coding gene leukocyte tyrosine kinase
Cpgi12128 2 119757554 to 119759445 1891 CpG island CpG island 12128
Tssr25828 2 119760409 to 119760421 12 - TSS region transcription start site region 25828
Rpap1 2 119763959 to 119787537 23578 - protein coding gene RNA polymerase II associated protein 1
Cpgi12129 2 119787225 to 119787854 629 CpG island CpG island 12129
Tssr25829 2 119787504 to 119787533 29 - TSS region transcription start site region 25829
Gm23814 2 119793942 to 119794043 101 - snRNA gene predicted gene, 23814
Tyro3 2 119797740 to 119818104 20364 + protein coding gene TYRO3 protein tyrosine kinase 3
Tssr19659 2 119798478 to 119798489 11 + TSS region transcription start site region 19659
Cpgi12130 2 119799097 to 119800466 1369 CpG island CpG island 12130
Tssr19660 2 119799542 to 119799572 30 + TSS region transcription start site region 19660
Tssr19661 2 119799574 to 119799592 18 + TSS region transcription start site region 19661
Tssr19662 2 119799725 to 119799760 35 + TSS region transcription start site region 19662
Tssr19663 2 119799764 to 119799785 21 + TSS region transcription start site region 19663