Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:119477228-120389581

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152 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ino80 2 119373042 to 119477629 104587 - protein coding gene INO80 complex subunit
Cpgi12120 2 119476669 to 119478464 1795 CpG island CpG island 12120
Tssr25822 2 119477617 to 119477705 88 - TSS region transcription start site region 25822
1700100M05Rik 2 119477940 to 119478685 745 unclassified gene RIKEN cDNA 1700100M05 gene
Tssr19636 2 119478862 to 119478871 9 + TSS region transcription start site region 19636
Gm33412 2 119508224 to 119516917 8693 + lncRNA gene predicted gene, 33412
Gm14208 2 119508552 to 119509229 677 - pseudogene predicted gene 14208
Exd1 2 119516505 to 119547627 31122 - protein coding gene exonuclease 3'-5' domain containing 1
pta 2 119524913 to 125725738 6200825 heritable phenotypic marker persistent truncus arteriosus
D2Mit395 2 119524913 to 119525037 124 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 395
D2Dcr64 2 119524913 to 119525034 121 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 64
Trmq3 2 119525037 to 60690268 -58834769 QTL T cell ratio modifier QTL 3
Tssr25823 2 119546883 to 119546888 5 - TSS region transcription start site region 25823
Cpgi12121 2 119546914 to 119548198 1284 CpG island CpG island 12121
Tssr19637 2 119547675 to 119547689 14 + TSS region transcription start site region 19637
Tssr19638 2 119547701 to 119547762 61 + TSS region transcription start site region 19638
Chp1 2 119547707 to 119587024 39317 + protein coding gene calcineurin-like EF hand protein 1
Tssr19639 2 119547765 to 119547802 37 + TSS region transcription start site region 19639
Tssr19640 2 119547803 to 119547816 13 + TSS region transcription start site region 19640
Tssr19641 2 119584565 to 119584584 19 + TSS region transcription start site region 19641
Cpgi12122 2 119594173 to 119594857 684 CpG island CpG island 12122
Tssr19642 2 119594288 to 119594332 44 + TSS region transcription start site region 19642
1700020I14Rik 2 119594296 to 119600746 6450 + lincRNA gene RIKEN cDNA 1700020I14 gene
Tssr19643 2 119599959 to 119599964 5 + TSS region transcription start site region 19643
Tssr19644 2 119604751 to 119604773 22 + TSS region transcription start site region 19644
Oip5 2 119609512 to 119618469 8957 - protein coding gene Opa interacting protein 5
Cpgi12123 2 119617972 to 119618929 957 CpG island CpG island 12123
Nusap1 2 119618298 to 119650165 31867 + protein coding gene nucleolar and spindle associated protein 1
Tssr25824 2 119618455 to 119618510 55 - TSS region transcription start site region 25824
Tssr19645 2 119618721 to 119618737 16 + TSS region transcription start site region 19645
n-R5s204 2 119631118 to 119631236 118 + rRNA gene nuclear encoded rRNA 5S 204
Tssr19646 2 119650412 to 119650416 4 + TSS region transcription start site region 19646
Ndufaf1 2 119655446 to 119662827 7381 - protein coding gene NADH:ubiquinone oxidoreductase complex assembly factor 1
Cpgi12124 2 119662572 to 119662953 381 CpG island CpG island 12124
Tssr25825 2 119662756 to 119662835 79 - TSS region transcription start site region 25825
H3f3c 2 119665626 to 119666036 410 - pseudogene H3 histone, family 3C
Tssr25826 2 119666150 to 119666153 3 - TSS region transcription start site region 25826
Gm14383 2 119669159 to 119669544 385 + pseudogene predicted gene 14383
Cpgi12125 2 119674624 to 119675735 1111 CpG island CpG island 12125
Tssr19647 2 119675062 to 119675095 33 + TSS region transcription start site region 19647
Rtf1 2 119675068 to 119735407 60339 + protein coding gene RTF1, Paf1/RNA polymerase II complex component
Tssr19648 2 119692153 to 119692186 33 + TSS region transcription start site region 19648
Tssr19649 2 119695017 to 119695031 14 + TSS region transcription start site region 19649
Tssr19650 2 119695050 to 119695062 12 + TSS region transcription start site region 19650
Tssr19651 2 119705587 to 119705603 16 + TSS region transcription start site region 19651
Tssr19652 2 119711472 to 119711482 10 + TSS region transcription start site region 19652
Tssr19653 2 119711485 to 119711495 10 + TSS region transcription start site region 19653
Tssr19654 2 119715391 to 119715428 37 + TSS region transcription start site region 19654
Tssr19655 2 119733447 to 119733449 2 + TSS region transcription start site region 19655
Gm25857 2 119740828 to 119740956 128 - snoRNA gene predicted gene, 25857
Cpgi12126 2 119741680 to 119744940 3260 CpG island CpG island 12126
Tssr19656 2 119742289 to 119742305 16 + TSS region transcription start site region 19656
Tssr19657 2 119742306 to 119742331 25 + TSS region transcription start site region 19657
Itpka 2 119742337 to 119751253 8916 + protein coding gene inositol 1,4,5-trisphosphate 3-kinase A
Tssr19658 2 119742344 to 119742355 11 + TSS region transcription start site region 19658
Tssr25827 2 119743160 to 119743205 45 - TSS region transcription start site region 25827
Cpgi12127 2 119749282 to 119749898 616 CpG island CpG island 12127
Ltk 2 119751326 to 119760431 9105 - protein coding gene leukocyte tyrosine kinase
Cpgi12128 2 119757554 to 119759445 1891 CpG island CpG island 12128
Tssr25828 2 119760409 to 119760421 12 - TSS region transcription start site region 25828
Rpap1 2 119763959 to 119787537 23578 - protein coding gene RNA polymerase II associated protein 1
Cpgi12129 2 119787225 to 119787854 629 CpG island CpG island 12129
Tssr25829 2 119787504 to 119787533 29 - TSS region transcription start site region 25829
Gm23814 2 119793942 to 119794043 101 - snRNA gene predicted gene, 23814
Tyro3 2 119797740 to 119818104 20364 + protein coding gene TYRO3 protein tyrosine kinase 3
Tssr19659 2 119798478 to 119798489 11 + TSS region transcription start site region 19659
Cpgi12130 2 119799097 to 119800466 1369 CpG island CpG island 12130
Tssr19660 2 119799542 to 119799572 30 + TSS region transcription start site region 19660
Tssr19661 2 119799574 to 119799592 18 + TSS region transcription start site region 19661
Tssr19662 2 119799725 to 119799760 35 + TSS region transcription start site region 19662
Tssr19663 2 119799764 to 119799785 21 + TSS region transcription start site region 19663
Tssr617 2 119826368 to 119826383 15 - TSS region transcription start site region 617
Tssr19664 2 119843918 to 119843957 39 + TSS region transcription start site region 19664
Cpgi12131 2 119872276 to 119873525 1249 CpG island CpG island 12131
Tssr19665 2 119872480 to 119872491 11 + TSS region transcription start site region 19665
Tssr19666 2 119872505 to 119872555 50 + TSS region transcription start site region 19666
Tssr19667 2 119872792 to 119872835 43 + TSS region transcription start site region 19667
Tssr19668 2 119872840 to 119872862 22 + TSS region transcription start site region 19668
Gm13998 2 119878069 to 119878403 334 - pseudogene predicted gene 13998
Tssr25830 2 119878453 to 119878455 2 - TSS region transcription start site region 25830
4930485G23Rik 2 119894873 to 119898388 3515 unclassified gene RIKEN cDNA 4930485G23 gene
Cpgi12132 2 119896888 to 119897849 961 CpG island CpG island 12132
Tssr25831 2 119897120 to 119897157 37 - TSS region transcription start site region 25831
Tssr19669 2 119897212 to 119897292 80 + TSS region transcription start site region 19669
Mga 2 119897228 to 119969581 72353 + protein coding gene MAX gene associated
Tssr19670 2 119897547 to 119897591 44 + TSS region transcription start site region 19670
Cpgi12133 2 119898084 to 119898528 444 CpG island CpG island 12133
Tssr25832 2 119898339 to 119898375 36 - TSS region transcription start site region 25832
Tssr19671 2 119903334 to 119903358 24 + TSS region transcription start site region 19671
Tssr19672 2 119948099 to 119948106 7 + TSS region transcription start site region 19672
Cpgi12134 2 119972253 to 119972951 698 CpG island CpG island 12134
Tssr19673 2 119972381 to 119972394 13 + TSS region transcription start site region 19673
Tssr19674 2 119972395 to 119972430 35 + TSS region transcription start site region 19674
Tssr19675 2 119972435 to 119972449 14 + TSS region transcription start site region 19675
Tssr19676 2 119972455 to 119972462 7 + TSS region transcription start site region 19676
Mapkbp1 2 119972699 to 120027408 54709 + protein coding gene mitogen-activated protein kinase binding protein 1
Tssr19677 2 119972729 to 119972746 17 + TSS region transcription start site region 19677
Tssr19678 2 119972749 to 119972760 11 + TSS region transcription start site region 19678
D2Ertd210e 2 119995663 to 119995893 230 DNA segment DNA segment, Chr 2, ERATO Doi 210, expressed
Tssr19679 2 120013163 to 120013211 48 + TSS region transcription start site region 19679
Mir7665 2 120017517 to 120017579 62 + miRNA gene microRNA 7665
Gm13999 2 120024807 to 120027453 2646 - antisense lncRNA gene predicted gene 13999
Cpgi12135 2 120027394 to 120027928 534 CpG island CpG island 12135
Tssr19680 2 120027481 to 120027509 28 + TSS region transcription start site region 19680
Jmjd7 2 120027483 to 120032594 5111 + protein coding gene jumonji domain containing 7
Gm28042 2 120027493 to 120043033 15540 + protein coding gene predicted gene, 28042
Tssr19681 2 120027582 to 120027587 5 + TSS region transcription start site region 19681
Tssr19682 2 120033429 to 120033447 18 + TSS region transcription start site region 19682
Pla2g4b 2 120033433 to 120043033 9600 + protein coding gene phospholipase A2, group IVB (cytosolic)
Tssr19683 2 120033453 to 120033466 13 + TSS region transcription start site region 19683
Sptbn5 2 120041493 to 120085693 44200 - protein coding gene spectrin beta, non-erythrocytic 5
Tssr25833 2 120047086 to 120047088 2 - TSS region transcription start site region 25833
Cpgi12136 2 120076094 to 120076749 655 CpG island CpG island 12136
Ehd4 2 120089487 to 120154575 65088 - protein coding gene EH-domain containing 4
Tssr25834 2 120090071 to 120090087 16 - TSS region transcription start site region 25834
Tssr25835 2 120091008 to 120091022 14 - TSS region transcription start site region 25835
Tssr25836 2 120137467 to 120137493 26 - TSS region transcription start site region 25836
Tssr25837 2 120137603 to 120137609 6 - TSS region transcription start site region 25837
Cpgi12137 2 120153770 to 120154985 1215 CpG island CpG island 12137
Tssr25838 2 120154486 to 120154498 12 - TSS region transcription start site region 25838
Tssr25839 2 120154512 to 120154590 78 - TSS region transcription start site region 25839
Tssr25840 2 120154600 to 120154611 11 - TSS region transcription start site region 25840
Pla2g4e 2 120166412 to 120245335 78923 - protein coding gene phospholipase A2, group IVE
Tssr618 2 120186763 to 120186765 2 + TSS region transcription start site region 618
Tssr25841 2 120207223 to 120207238 15 - TSS region transcription start site region 25841
Gm13997 2 120244921 to 120245598 677 - unclassified non-coding RNA gene predicted gene 13997
Cpgi12138 2 120244957 to 120245304 347 CpG island CpG island 12138
Tssr25842 2 120245055 to 120245071 16 - TSS region transcription start site region 25842
Tssr25843 2 120245077 to 120245105 28 - TSS region transcription start site region 25843
Tssr25844 2 120245123 to 120245143 20 - TSS region transcription start site region 25844
Tssr25845 2 120245157 to 120245246 89 - TSS region transcription start site region 25845
Tssr25846 2 120252267 to 120252294 27 - TSS region transcription start site region 25846
Pla2g4d 2 120265866 to 120289069 23203 - protein coding gene phospholipase A2, group IVD
Tssr25847 2 120289063 to 120289074 11 - TSS region transcription start site region 25847
Pla2g4f 2 120299957 to 120314165 14208 - protein coding gene phospholipase A2, group IVF
D2Dcr25 2 120301119 to 120301342 223 DNA segment DNA segment, Chr 2, Derry C. Roopenian 25
Tssr25848 2 120314081 to 120314106 25 - TSS region transcription start site region 25848
Tssr25849 2 120314115 to 120314136 21 - TSS region transcription start site region 25849
Tssr25850 2 120314141 to 120314172 31 - TSS region transcription start site region 25850
Vps39 2 120316461 to 120353137 36676 - protein coding gene VPS39 HOPS complex subunit
Tssr25851 2 120328449 to 120328458 9 - TSS region transcription start site region 25851
Tssr25852 2 120328681 to 120328698 17 - TSS region transcription start site region 25852
Tssr25853 2 120352022 to 120352030 8 - TSS region transcription start site region 25853
Cpgi12139 2 120352630 to 120353218 588 CpG island CpG island 12139
Tssr25854 2 120352972 to 120352983 11 - TSS region transcription start site region 25854
Tssr25855 2 120352985 to 120352996 11 - TSS region transcription start site region 25855
Tssr25856 2 120352999 to 120353021 22 - TSS region transcription start site region 25856
Tssr25857 2 120353094 to 120353143 49 - TSS region transcription start site region 25857
Tmem87a 2 120355312 to 120404113 48801 - protein coding gene transmembrane protein 87A
Tssr25858 2 120355488 to 120355491 3 - TSS region transcription start site region 25858
Tssr25859 2 120368792 to 120368795 3 - TSS region transcription start site region 25859
D2Dcr27 2 120380999 to 120381277 278 DNA segment DNA segment, Chr 2, Derry C. Roopenian 27