Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:118833042-120017629

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252 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Knstrn 2 118813988 to 118837210 23222 + protein coding gene kinetochore-localized astrin/SPAG5 binding
Gm14091 2 118829874 to 118834122 4248 - antisense lncRNA gene predicted gene 14091
Tssr25794 2 118834157 to 118834196 39 - TSS region transcription start site region 25794
Gm39913 2 118837390 to 118861882 24492 - lncRNA gene predicted gene, 39913
Cpgi12095 2 118861837 to 118862276 439 CpG island CpG island 12095
Ivd 2 118861959 to 118882907 20948 + protein coding gene isovaleryl coenzyme A dehydrogenase
Tssr19584 2 118861986 to 118862008 22 + TSS region transcription start site region 19584
Tssr19585 2 118862009 to 118862022 13 + TSS region transcription start site region 19585
Tssr19586 2 118870375 to 118870402 27 + TSS region transcription start site region 19586
Cpgi12096 2 118883274 to 118883794 520 CpG island CpG island 12096
Gm32798 2 118887481 to 118894929 7448 + lncRNA gene predicted gene, 32798
Gm32957 2 118895347 to 118900288 4941 - lncRNA gene predicted gene, 32957
Cpgi12097 2 118896220 to 118897157 937 CpG island CpG island 12097
Bahd1 2 118900377 to 118924528 24151 + protein coding gene bromo adjacent homology domain containing 1
Tssr19587 2 118900379 to 118900397 18 + TSS region transcription start site region 19587
Cpgi12098 2 118900746 to 118903143 2397 CpG island CpG island 12098
Tssr19588 2 118901381 to 118901403 22 + TSS region transcription start site region 19588
Tssr19589 2 118901428 to 118901488 60 + TSS region transcription start site region 19589
Tssr19590 2 118901589 to 118901617 28 + TSS region transcription start site region 19590
Tssr19591 2 118901621 to 118901663 42 + TSS region transcription start site region 19591
Cpgi12099 2 118926286 to 118927354 1068 CpG island CpG island 12099
Tssr19592 2 118926496 to 118926554 58 + TSS region transcription start site region 19592
Chst14 2 118926497 to 118928585 2088 + protein coding gene carbohydrate sulfotransferase 14
Tssr19593 2 118926555 to 118926575 20 + TSS region transcription start site region 19593
Tssr19594 2 118926576 to 118926608 32 + TSS region transcription start site region 19594
Cpgi12100 2 118972693 to 118973062 369 CpG island CpG island 12100
Cpgi12101 2 118976002 to 118976928 926 CpG island CpG island 12101
Gm39914 2 118979591 to 118988327 8736 - lncRNA gene predicted gene, 39914
Tssr19595 2 118997044 to 118997047 3 + TSS region transcription start site region 19595
Gm14089 2 118997068 to 119000684 3616 + antisense lncRNA gene predicted gene 14089
Tssr19596 2 119008132 to 119008149 17 + TSS region transcription start site region 19596
Uqcrh-ps2 2 119008209 to 119008477 268 + pseudogene ubiquinol-cytochrome c reductase hinge protein, pseudogene 2
Ccdc32 2 119017779 to 119029393 11614 - protein coding gene coiled-coil domain containing 32
Cpgi12102 2 119029219 to 119029505 286 CpG island CpG island 12102
Tssr25795 2 119029339 to 119029347 8 - TSS region transcription start site region 25795
Tssr25796 2 119029352 to 119029355 3 - TSS region transcription start site region 25796
Tssr25797 2 119029359 to 119029389 30 - TSS region transcription start site region 25797
Tssr25798 2 119029392 to 119029395 3 - TSS region transcription start site region 25798
Cpgi12103 2 119034707 to 119035515 808 CpG island CpG island 12103
Tssr19597 2 119034783 to 119034869 86 + TSS region transcription start site region 19597
Rpusd2 2 119034790 to 119039769 4979 + protein coding gene RNA pseudouridylate synthase domain containing 2
Tssr19598 2 119039200 to 119039207 7 + TSS region transcription start site region 19598
n-TSgct7 2 119046750 to 119046831 81 - tRNA gene nuclear encoded tRNA serine 7 (anticodon GCT)
Cpgi12104 2 119046869 to 119047696 827 CpG island CpG island 12104
Knl1 2 119047038 to 119104829 57791 + protein coding gene kinetochore scaffold 1
Tssr19599 2 119047116 to 119047121 5 + TSS region transcription start site region 19599
Tssr19600 2 119047129 to 119047159 30 + TSS region transcription start site region 19600
Tssr19601 2 119047162 to 119047214 52 + TSS region transcription start site region 19601
Tssr19602 2 119047376 to 119047388 12 + TSS region transcription start site region 19602
n-TIaat12 2 119056153 to 119056226 73 - tRNA gene nuclear encoded tRNA isoleucine 12 (anticodon GAT)
D2Mit133 2 119064160 to 119064359 199 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 133
Kidq1 2 119064359 to 20892967 -98171392 QTL kidney weight QTL 1
W3q1 2 119064359 to 20892967 -98171392 QTL weight 3 weeks QTL 1
W10q9 2 119064359 to 20892967 -98171392 QTL weight 10 weeks QTL 9
Estoq1 2 119064359 to 20892967 -98171392 QTL embryo survival total QTL 1
Splq1 2 119064359 to 20892967 -98171392 QTL spleen weight QTL 1
Hrtq1 2 119064359 to 20892967 -98171392 QTL heart weight QTL 1
Egq1 2 119064359 to 20892967 -98171392 QTL early growth QTL 1
W6q1 2 119064359 to 20892967 -98171392 QTL weight 6 weeks QTL 1
Lvrq1 2 119064359 to 20892967 -98171392 QTL liver weight QTL 1
Cpgi12105 2 119112379 to 119113297 918 CpG island CpG island 12105
Tssr25799 2 119112748 to 119112769 21 - TSS region transcription start site region 25799
Tssr19603 2 119112809 to 119112882 73 + TSS region transcription start site region 19603
Rad51 2 119112817 to 119136070 23253 + protein coding gene RAD51 recombinase
Rmdn3 2 119137001 to 119157034 20033 - protein coding gene regulator of microtubule dynamics 3
Cpgi12106 2 119156211 to 119157341 1130 CpG island CpG island 12106
Tssr25800 2 119156936 to 119156986 50 - TSS region transcription start site region 25800
Cpgi12107 2 119167322 to 119168253 931 CpG island CpG island 12107
Tssr19604 2 119167758 to 119167779 21 + TSS region transcription start site region 19604
Tssr19605 2 119167782 to 119167835 53 + TSS region transcription start site region 19605
Gchfr 2 119167788 to 119172389 4601 + protein coding gene GTP cyclohydrolase I feedback regulator
Dnajc17 2 119172500 to 119208795 36295 - protein coding gene DnaJ heat shock protein family (Hsp40) member C17
Tssr25801 2 119173168 to 119173175 7 - TSS region transcription start site region 25801
Tssr615 2 119174325 to 119174342 17 + TSS region transcription start site region 615
Tssr19606 2 119174483 to 119174527 44 + TSS region transcription start site region 19606
Gm14137 2 119174509 to 119177575 3066 + protein coding gene predicted gene 14137
Tssr19607 2 119174552 to 119174563 11 + TSS region transcription start site region 19607
Tssr25802 2 119175142 to 119175172 30 - TSS region transcription start site region 25802
Tssr616 2 119186235 to 119186240 5 + TSS region transcription start site region 616
Gm14138 2 119187517 to 119188258 741 + pseudogene predicted gene 14138
Cpgi12108 2 119208392 to 119209348 956 CpG island CpG island 12108
Zfyve19 2 119208720 to 119217050 8330 + protein coding gene zinc finger, FYVE domain containing 19
Tssr25803 2 119208767 to 119208802 35 - TSS region transcription start site region 25803
Tssr19608 2 119208975 to 119209029 54 + TSS region transcription start site region 19608
Ppp1r14d 2 119218119 to 119229906 11787 - protein coding gene protein phosphatase 1, regulatory inhibitor subunit 14D
Tssr25804 2 119229828 to 119229844 16 - TSS region transcription start site region 25804
Tssr25805 2 119229849 to 119229877 28 - TSS region transcription start site region 25805
Tssr25806 2 119229885 to 119229913 28 - TSS region transcription start site region 25806
Tssr25807 2 119229914 to 119229926 12 - TSS region transcription start site region 25807
Tssr25808 2 119230391 to 119230402 11 - TSS region transcription start site region 25808
9130007G19Rik 2 119234998 to 119237262 2264 unclassified gene RIKEN cDNA 9130007G19 gene
Cpgi12109 2 119236766 to 119238331 1565 CpG island CpG island 12109
Tssr19609 2 119237205 to 119237217 12 + TSS region transcription start site region 19609
Tssr19610 2 119237351 to 119237374 23 + TSS region transcription start site region 19610
Spint1 2 119237362 to 119249527 12165 + protein coding gene serine protease inhibitor, Kunitz type 1
Tssr19611 2 119237390 to 119237420 30 + TSS region transcription start site region 19611
Tssr19612 2 119237453 to 119237474 21 + TSS region transcription start site region 19612
Tssr19613 2 119237482 to 119237508 26 + TSS region transcription start site region 19613
Tssr19614 2 119237511 to 119237524 13 + TSS region transcription start site region 19614
Tssr19615 2 119237531 to 119237552 21 + TSS region transcription start site region 19615
Tssr19616 2 119237634 to 119237645 11 + TSS region transcription start site region 19616
Tssr19617 2 119237646 to 119237649 3 + TSS region transcription start site region 19617
Tssr19618 2 119237678 to 119237710 32 + TSS region transcription start site region 19618
Tssr19619 2 119237725 to 119237740 15 + TSS region transcription start site region 19619
Tssr19620 2 119240631 to 119240647 16 + TSS region transcription start site region 19620
Tssr19621 2 119267134 to 119267173 39 + TSS region transcription start site region 19621
Rhov 2 119269201 to 119271272 2071 - protein coding gene ras homolog family member V
Cpgi12110 2 119270597 to 119271340 743 CpG island CpG island 12110
Tssr25809 2 119271202 to 119271235 33 - TSS region transcription start site region 25809
Cpgi12111 2 119277890 to 119278112 222 CpG island CpG island 12111
Tssr25810 2 119277983 to 119277992 9 - TSS region transcription start site region 25810
Tssr25811 2 119278004 to 119278015 11 - TSS region transcription start site region 25811
Gm14175 2 119284792 to 119285032 240 + pseudogene predicted gene 14175
Cpgi12112 2 119288410 to 119289119 709 CpG island CpG island 12112
Tssr19622 2 119288725 to 119288771 46 + TSS region transcription start site region 19622
Vps18 2 119288742 to 119298453 9711 + protein coding gene VPS18 CORVET/HOPS core subunit
Tssr19623 2 119288773 to 119288796 23 + TSS region transcription start site region 19623
Tssr19624 2 119288799 to 119288824 25 + TSS region transcription start site region 19624
Cpgi12113 2 119293531 to 119294644 1113 CpG island CpG island 12113
Gm14207 2 119321199 to 119326197 4998 - lncRNA gene predicted gene 14207
Cpgi12114 2 119321851 to 119323168 1317 CpG island CpG island 12114
Cpgi12115 2 119323962 to 119324769 807 CpG island CpG island 12115
Tssr25812 2 119324956 to 119324980 24 - TSS region transcription start site region 25812
Cpgi12116 2 119325116 to 119327493 2377 CpG island CpG island 12116
Tssr25813 2 119325565 to 119325588 23 - TSS region transcription start site region 25813
Tssr25814 2 119325591 to 119325628 37 - TSS region transcription start site region 25814
Dll4 2 119325784 to 119335666 9882 + protein coding gene delta like canonical Notch ligand 4
Tssr19625 2 119325813 to 119325817 4 + TSS region transcription start site region 19625
D2Mit104 2 119328862 to 119329009 147 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 104
D2Dcr63 2 119328891 to 119329010 119 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 63
Tssr19626 2 119329749 to 119329766 17 + TSS region transcription start site region 19626
Cpgi12117 2 119332228 to 119332481 253 CpG island CpG island 12117
Cpgi12118 2 119337531 to 119338550 1019 CpG island CpG island 12118
Tssr25815 2 119346751 to 119346756 5 - TSS region transcription start site region 25815
Cpgi12119 2 119350738 to 119351695 957 CpG island CpG island 12119
Tssr19627 2 119351207 to 119351216 9 + TSS region transcription start site region 19627
Tssr19628 2 119351222 to 119351233 11 + TSS region transcription start site region 19628
Chac1 2 119351242 to 119354326 3084 + protein coding gene ChaC, cation transport regulator 1
Tssr19629 2 119351258 to 119351270 12 + TSS region transcription start site region 19629
Tssr19630 2 119351282 to 119351299 17 + TSS region transcription start site region 19630
Tssr19631 2 119351899 to 119351913 14 + TSS region transcription start site region 19631
Tssr19632 2 119353706 to 119353709 3 + TSS region transcription start site region 19632
Tssr19633 2 119356320 to 119356326 6 + TSS region transcription start site region 19633
Tssr19634 2 119356388 to 119356397 9 + TSS region transcription start site region 19634
Ino80 2 119373042 to 119477629 104587 - protein coding gene INO80 complex subunit
Tssr25816 2 119418459 to 119418464 5 - TSS region transcription start site region 25816
Tssr25817 2 119440187 to 119440193 6 - TSS region transcription start site region 25817
Tssr25818 2 119442859 to 119442863 4 - TSS region transcription start site region 25818
Tssr25819 2 119456424 to 119456437 13 - TSS region transcription start site region 25819
Tssr25820 2 119462235 to 119462256 21 - TSS region transcription start site region 25820
Tssr25821 2 119473863 to 119473868 5 - TSS region transcription start site region 25821
Cpgi12120 2 119476669 to 119478464 1795 CpG island CpG island 12120
Tssr19635 2 119477066 to 119477102 36 + TSS region transcription start site region 19635
Tssr25822 2 119477617 to 119477705 88 - TSS region transcription start site region 25822
1700100M05Rik 2 119477940 to 119478685 745 unclassified gene RIKEN cDNA 1700100M05 gene
Tssr19636 2 119478862 to 119478871 9 + TSS region transcription start site region 19636
Gm33412 2 119508224 to 119516917 8693 + lncRNA gene predicted gene, 33412
Gm14208 2 119508552 to 119509229 677 - pseudogene predicted gene 14208
Exd1 2 119516505 to 119547627 31122 - protein coding gene exonuclease 3'-5' domain containing 1
D2Mit395 2 119524913 to 119525037 124 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 395
D2Dcr64 2 119524913 to 119525034 121 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 64
pta 2 119524913 to 125725738 6200825 heritable phenotypic marker persistent truncus arteriosus
Trmq3 2 119525037 to 60690268 -58834769 QTL T cell ratio modifier QTL 3
Tssr25823 2 119546883 to 119546888 5 - TSS region transcription start site region 25823
Cpgi12121 2 119546914 to 119548198 1284 CpG island CpG island 12121
Tssr19637 2 119547675 to 119547689 14 + TSS region transcription start site region 19637
Tssr19638 2 119547701 to 119547762 61 + TSS region transcription start site region 19638
Chp1 2 119547707 to 119587024 39317 + protein coding gene calcineurin-like EF hand protein 1
Tssr19639 2 119547765 to 119547802 37 + TSS region transcription start site region 19639
Tssr19640 2 119547803 to 119547816 13 + TSS region transcription start site region 19640
Tssr19641 2 119584565 to 119584584 19 + TSS region transcription start site region 19641
Cpgi12122 2 119594173 to 119594857 684 CpG island CpG island 12122
Tssr19642 2 119594288 to 119594332 44 + TSS region transcription start site region 19642
1700020I14Rik 2 119594296 to 119600746 6450 + lincRNA gene RIKEN cDNA 1700020I14 gene
Tssr19643 2 119599959 to 119599964 5 + TSS region transcription start site region 19643
Tssr19644 2 119604751 to 119604773 22 + TSS region transcription start site region 19644
Oip5 2 119609512 to 119618469 8957 - protein coding gene Opa interacting protein 5
Cpgi12123 2 119617972 to 119618929 957 CpG island CpG island 12123
Nusap1 2 119618298 to 119650165 31867 + protein coding gene nucleolar and spindle associated protein 1
Tssr25824 2 119618455 to 119618510 55 - TSS region transcription start site region 25824
Tssr19645 2 119618721 to 119618737 16 + TSS region transcription start site region 19645
n-R5s204 2 119631118 to 119631236 118 + rRNA gene nuclear encoded rRNA 5S 204
Tssr19646 2 119650412 to 119650416 4 + TSS region transcription start site region 19646
Ndufaf1 2 119655446 to 119662827 7381 - protein coding gene NADH:ubiquinone oxidoreductase complex assembly factor 1
Cpgi12124 2 119662572 to 119662953 381 CpG island CpG island 12124
Tssr25825 2 119662756 to 119662835 79 - TSS region transcription start site region 25825
H3f3c 2 119665626 to 119666036 410 - pseudogene H3 histone, family 3C
Tssr25826 2 119666150 to 119666153 3 - TSS region transcription start site region 25826
Gm14383 2 119669159 to 119669544 385 + pseudogene predicted gene 14383
Cpgi12125 2 119674624 to 119675735 1111 CpG island CpG island 12125
Tssr19647 2 119675062 to 119675095 33 + TSS region transcription start site region 19647
Rtf1 2 119675068 to 119735407 60339 + protein coding gene RTF1, Paf1/RNA polymerase II complex component
Tssr19648 2 119692153 to 119692186 33 + TSS region transcription start site region 19648
Tssr19649 2 119695017 to 119695031 14 + TSS region transcription start site region 19649
Tssr19650 2 119695050 to 119695062 12 + TSS region transcription start site region 19650
Tssr19651 2 119705587 to 119705603 16 + TSS region transcription start site region 19651
Tssr19652 2 119711472 to 119711482 10 + TSS region transcription start site region 19652
Tssr19653 2 119711485 to 119711495 10 + TSS region transcription start site region 19653
Tssr19654 2 119715391 to 119715428 37 + TSS region transcription start site region 19654
Tssr19655 2 119733447 to 119733449 2 + TSS region transcription start site region 19655