Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:118245843-118709696

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fsip1 2 118130424 to 118256966 126542 - protein coding gene fibrous sheath-interacting protein 1
Gm22800 2 118248689 to 118248782 93 - miRNA gene predicted gene, 22800
Gm29232 2 118253255 to 118279430 26175 - unclassified non-coding RNA gene predicted gene 29232
Cpgi12076 2 118256628 to 118257040 412 CpG island CpG island 12076
Tssr25767 2 118256927 to 118256928 1 - TSS region transcription start site region 25767
Tssr25768 2 118256929 to 118256973 44 - TSS region transcription start site region 25768
A930104D05Rik 2 118270233 to 118276169 5936 - lincRNA gene RIKEN cDNA A930104D05 gene
4930451A11Rik 2 118271138 to 118271773 635 unclassified gene RIKEN cDNA 4930451A11 gene
Gpr176 2 118277110 to 118373419 96309 - protein coding gene G protein-coupled receptor 176
Tssr25769 2 118296926 to 118296938 12 - TSS region transcription start site region 25769
1700054M17Rik 2 118304914 to 118308166 3252 + antisense lncRNA gene RIKEN cDNA 1700054M17 gene
Tssr25770 2 118307676 to 118307684 8 - TSS region transcription start site region 25770
Tssr19553 2 118329036 to 118329042 6 + TSS region transcription start site region 19553
Gm22651 2 118351238 to 118351331 93 + rRNA gene predicted gene, 22651
Cpgi12077 2 118372724 to 118374303 1579 CpG island CpG island 12077
Tssr25771 2 118373309 to 118373341 32 - TSS region transcription start site region 25771
Tssr25772 2 118373347 to 118373379 32 - TSS region transcription start site region 25772
Tssr25773 2 118373985 to 118374007 22 - TSS region transcription start site region 25773
Cpgi12078 2 118388327 to 118388975 648 CpG island CpG island 12078
Tssr19554 2 118388590 to 118388606 16 + TSS region transcription start site region 19554
Tssr19555 2 118388615 to 118388640 25 + TSS region transcription start site region 19555
Eif2ak4 2 118388618 to 118475234 86616 + protein coding gene eukaryotic translation initiation factor 2 alpha kinase 4
Tssr19556 2 118388651 to 118388669 18 + TSS region transcription start site region 19556
Tssr19557 2 118388674 to 118388683 9 + TSS region transcription start site region 19557
Cpgi12079 2 118430792 to 118431249 457 CpG island CpG island 12079
D2Mit276 2 118442067 to 118442203 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 276
Tssr19558 2 118462597 to 118462600 3 + TSS region transcription start site region 19558
Srp14 2 118475843 to 118479696 3853 - protein coding gene signal recognition particle 14
Tssr25774 2 118479019 to 118479045 26 - TSS region transcription start site region 25774
Cpgi12080 2 118479073 to 118479910 837 CpG island CpG island 12080
Tssr25775 2 118479637 to 118479687 50 - TSS region transcription start site region 25775
Gm13983 2 118483313 to 118484177 864 - pseudogene predicted gene 13983
Gm32684 2 118498877 to 118501404 2527 + lncRNA gene predicted gene, 32684
Cpgi12081 2 118510447 to 118510739 292 CpG island CpG island 12081
Cfq7 2 118526291 to 125206952 6680661 QTL conditioned fear QTL 7
Bmf 2 118528757 to 118549678 20921 - protein coding gene BCL2 modifying factor
Tssr25776 2 118538990 to 118538995 5 - TSS region transcription start site region 25776
Cpgi12082 2 118544384 to 118544685 301 CpG island CpG island 12082
Tssr25777 2 118545162 to 118545169 7 - TSS region transcription start site region 25777
Tssr25778 2 118545310 to 118545344 34 - TSS region transcription start site region 25778
Tssr19559 2 118546743 to 118546752 9 + TSS region transcription start site region 19559
Tssr25779 2 118547018 to 118547042 24 - TSS region transcription start site region 25779
Tssr25780 2 118547541 to 118547567 26 - TSS region transcription start site region 25780
Cpgi12083 2 118548896 to 118549899 1003 CpG island CpG island 12083
Tssr25781 2 118549625 to 118549655 30 - TSS region transcription start site region 25781
Tssr25782 2 118549668 to 118549683 15 - TSS region transcription start site region 25782
Tssr19560 2 118559551 to 118559556 5 + TSS region transcription start site region 19560
Tssr19561 2 118560439 to 118560442 3 + TSS region transcription start site region 19561
D2Dcr62 2 118573426 to 118573540 114 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 62
D2Mit484 2 118573430 to 118573541 111 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 484
Gm14016 2 118594079 to 118594564 485 + pseudogene predicted gene 14016
Cpgi12084 2 118598025 to 118598630 605 CpG island CpG island 12084
Tssr19562 2 118598209 to 118598226 17 + TSS region transcription start site region 19562
Bub1b 2 118598211 to 118641591 43380 + protein coding gene BUB1B, mitotic checkpoint serine/threonine kinase
Tssr19563 2 118598232 to 118598267 35 + TSS region transcription start site region 19563
Tssr19564 2 118598271 to 118598300 29 + TSS region transcription start site region 19564
Tssr25783 2 118637526 to 118637564 38 - TSS region transcription start site region 25783
1700008N17Rik 2 118658819 to 118660069 1250 unclassified gene RIKEN cDNA 1700008N17 gene
Cpgi12085 2 118663220 to 118663553 333 CpG island CpG island 12085
Tssr19565 2 118663235 to 118663309 74 + TSS region transcription start site region 19565
Pak6 2 118663303 to 118698020 34717 + protein coding gene p21 (RAC1) activated kinase 6
Tssr19566 2 118663311 to 118663328 17 + TSS region transcription start site region 19566
Tssr19567 2 118663722 to 118663762 40 + TSS region transcription start site region 19567
Cpgi12086 2 118676655 to 118678047 1392 CpG island CpG island 12086
Tssr613 2 118677228 to 118677283 55 + TSS region transcription start site region 613
Cpgi12087 2 118696421 to 118696708 287 CpG island CpG island 12087
Ankrd63 2 118699103 to 118703963 4860 - protein coding gene ankyrin repeat domain 63
Cpgi12088 2 118700234 to 118700565 331 CpG island CpG island 12088
Cpgi12089 2 118702202 to 118704696 2494 CpG island CpG island 12089
Plcb2 2 118707517 to 118728438 20921 - protein coding gene phospholipase C, beta 2