Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:117998689-118498782

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Actre14 2 114292889 to 118112609 3819720 QTL activity response to ethanol 14
Gm13986 2 117857291 to 118111202 253911 - lncRNA gene predicted gene 13986
Tssr608 2 118008037 to 118008044 7 - TSS region transcription start site region 608
Tssr25762 2 118008050 to 118008069 19 - TSS region transcription start site region 25762
Tssr609 2 118008312 to 118008334 22 + TSS region transcription start site region 609
Tssr25763 2 118011776 to 118011808 32 - TSS region transcription start site region 25763
Tssr25764 2 118011867 to 118011875 8 - TSS region transcription start site region 25764
Tssr610 2 118011893 to 118011907 14 - TSS region transcription start site region 610
Tssr611 2 118011912 to 118011921 9 - TSS region transcription start site region 611
Tssr25765 2 118012374 to 118012385 11 - TSS region transcription start site region 25765
Tssr612 2 118012463 to 118012470 7 + TSS region transcription start site region 612
Gm36979 2 118039843 to 118041480 1637 + unclassified gene predicted gene, 36979
Gm18846 2 118052769 to 118053337 568 + pseudogene predicted gene, 18846
Gm25308 2 118077805 to 118077962 157 - snRNA gene predicted gene, 25308
D2Mit510 2 118109438 to 118109656 218 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-510
Cpgi12075 2 118111249 to 118112183 934 CpG island CpG island 12075
Tssr19527 2 118111492 to 118111515 23 + TSS region transcription start site region 19527
Thbs1 2 118111876 to 118127133 15257 + protein coding gene thrombospondin 1
Tssr19528 2 118111879 to 118111899 20 + TSS region transcription start site region 19528
Tssr19529 2 118112364 to 118112390 26 + TSS region transcription start site region 19529
D2Mit62 2 118112449 to 118112609 160 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 62
Gvhd3 2 118112449 to 118112609 160 QTL graft-versus host disease 3
Bglu1 2 118112449 to 174483070 56370621 QTL blood glucose level 1
Tbbmd2 2 118112449 to 118112609 160 QTL total body bone mineral density 2
Fembrs1 2 118112449 to 118112609 160 QTL femur breaking strength 1
Tssr19530 2 118112654 to 118112665 11 + TSS region transcription start site region 19530
Tssr19531 2 118113049 to 118113063 14 + TSS region transcription start site region 19531
Tssr19532 2 118113091 to 118113105 14 + TSS region transcription start site region 19532
Tssr19533 2 118114684 to 118114716 32 + TSS region transcription start site region 19533
Tssr19534 2 118118241 to 118118264 23 + TSS region transcription start site region 19534
Tssr19535 2 118118676 to 118118688 12 + TSS region transcription start site region 19535
Tssr19536 2 118118748 to 118118766 18 + TSS region transcription start site region 19536
Tssr19537 2 118119082 to 118119123 41 + TSS region transcription start site region 19537
Tssr19538 2 118119998 to 118120012 14 + TSS region transcription start site region 19538
Tssr19539 2 118120247 to 118120260 13 + TSS region transcription start site region 19539
Tssr19540 2 118120268 to 118120284 16 + TSS region transcription start site region 19540
Tssr19541 2 118120831 to 118120843 12 + TSS region transcription start site region 19541
Tssr19542 2 118120889 to 118120903 14 + TSS region transcription start site region 19542
Gm29233 2 118123451 to 118124047 596 - lincRNA gene predicted gene 29233
Tssr19543 2 118124185 to 118124195 10 + TSS region transcription start site region 19543
Tssr19544 2 118125723 to 118125745 22 + TSS region transcription start site region 19544
Tssr19545 2 118125862 to 118125874 12 + TSS region transcription start site region 19545
Tssr19546 2 118126515 to 118126526 11 + TSS region transcription start site region 19546
Tssr19547 2 118126589 to 118126600 11 + TSS region transcription start site region 19547
Tssr19548 2 118126664 to 118126678 14 + TSS region transcription start site region 19548
Tssr19549 2 118126681 to 118126714 33 + TSS region transcription start site region 19549
Tssr19550 2 118126721 to 118126740 19 + TSS region transcription start site region 19550
Tssr19551 2 118126775 to 118126822 47 + TSS region transcription start site region 19551
Tssr19552 2 118126823 to 118126888 65 + TSS region transcription start site region 19552
Fsip1 2 118130424 to 118256966 126542 - protein coding gene fibrous sheath-interacting protein 1
Tssr25766 2 118218630 to 118218632 2 - TSS region transcription start site region 25766
Gm22800 2 118248689 to 118248782 93 - miRNA gene predicted gene, 22800
Gm29232 2 118253255 to 118279430 26175 - unclassified non-coding RNA gene predicted gene 29232
Cpgi12076 2 118256628 to 118257040 412 CpG island CpG island 12076
Tssr25767 2 118256927 to 118256928 1 - TSS region transcription start site region 25767
Tssr25768 2 118256929 to 118256973 44 - TSS region transcription start site region 25768
A930104D05Rik 2 118270233 to 118276169 5936 - lincRNA gene RIKEN cDNA A930104D05 gene
4930451A11Rik 2 118271138 to 118271773 635 unclassified gene RIKEN cDNA 4930451A11 gene
Gpr176 2 118277110 to 118373419 96309 - protein coding gene G protein-coupled receptor 176
Tssr25769 2 118296926 to 118296938 12 - TSS region transcription start site region 25769
1700054M17Rik 2 118304914 to 118308166 3252 + antisense lncRNA gene RIKEN cDNA 1700054M17 gene
Tssr25770 2 118307676 to 118307684 8 - TSS region transcription start site region 25770
Tssr19553 2 118329036 to 118329042 6 + TSS region transcription start site region 19553
Gm22651 2 118351238 to 118351331 93 + rRNA gene predicted gene, 22651
Cpgi12077 2 118372724 to 118374303 1579 CpG island CpG island 12077
Tssr25771 2 118373309 to 118373341 32 - TSS region transcription start site region 25771
Tssr25772 2 118373347 to 118373379 32 - TSS region transcription start site region 25772
Tssr25773 2 118373985 to 118374007 22 - TSS region transcription start site region 25773
Cpgi12078 2 118388327 to 118388975 648 CpG island CpG island 12078
Tssr19554 2 118388590 to 118388606 16 + TSS region transcription start site region 19554
Tssr19555 2 118388615 to 118388640 25 + TSS region transcription start site region 19555
Eif2ak4 2 118388618 to 118475234 86616 + protein coding gene eukaryotic translation initiation factor 2 alpha kinase 4
Tssr19556 2 118388651 to 118388669 18 + TSS region transcription start site region 19556
Tssr19557 2 118388674 to 118388683 9 + TSS region transcription start site region 19557
Cpgi12079 2 118430792 to 118431249 457 CpG island CpG island 12079
D2Mit276 2 118442067 to 118442203 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 276
Tssr19558 2 118462597 to 118462600 3 + TSS region transcription start site region 19558
Srp14 2 118475843 to 118479696 3853 - protein coding gene signal recognition particle 14
Tssr25774 2 118479019 to 118479045 26 - TSS region transcription start site region 25774
Cpgi12080 2 118479073 to 118479910 837 CpG island CpG island 12080
Tssr25775 2 118479637 to 118479687 50 - TSS region transcription start site region 25775
Gm13983 2 118483313 to 118484177 864 - pseudogene predicted gene 13983