Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:116449725-118049754

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm13991 2 116527843 to 116528490 647 - pseudogene predicted gene 13991
D2Mit443 2 116785469 to 116785572 103 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 443
D2Mit189.2 2 116812833 to 116812957 124 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 189.2
D2Mit189 2 116812962 to 116813081 119 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 189
Gm13990 2 116848099 to 116877168 29069 - antisense lncRNA gene predicted gene 13990
Tssr19470 2 116878672 to 116878682 10 + TSS region transcription start site region 19470
Tssr19471 2 116878686 to 116878696 10 + TSS region transcription start site region 19471
Tmco5 2 116878691 to 116892494 13803 + protein coding gene transmembrane and coiled-coil domains 5
Tssr19472 2 116878698 to 116878743 45 + TSS region transcription start site region 19472
Gm46758 2 116893984 to 116905886 11902 - lncRNA gene predicted gene, 46758
Tssr19473 2 116899744 to 116899751 7 + TSS region transcription start site region 19473
D330050G23Rik 2 116900152 to 116912791 12639 + lincRNA gene RIKEN cDNA D330050G23 gene
Tssr19474 2 116900200 to 116900216 16 + TSS region transcription start site region 19474
Tssr19475 2 116914271 to 116914277 6 + TSS region transcription start site region 19475
Gm31906 2 116914702 to 116917648 2946 - lncRNA gene predicted gene, 31906
Tssr604 2 116925469 to 116925471 2 + TSS region transcription start site region 604
Gm24914 2 116963237 to 116963549 312 + unclassified non-coding RNA gene predicted gene, 24914
Gm25514 2 116968039 to 116968173 134 - snRNA gene predicted gene, 25514
Tssr19476 2 116972377 to 116972399 22 + TSS region transcription start site region 19476
Tssr19477 2 116972405 to 116972420 15 + TSS region transcription start site region 19477
Gm29340 2 116972575 to 116976428 3853 - lincRNA gene predicted gene 29340
Tssr19478 2 116972832 to 116972847 15 + TSS region transcription start site region 19478
Cpgi12071 2 116975516 to 116976188 672 CpG island CpG island 12071
D2Mit103 2 116978791 to 116978935 144 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 103
Tssr605 2 116989569 to 116989584 15 + TSS region transcription start site region 605
Tssr25739 2 116999653 to 116999657 4 - TSS region transcription start site region 25739
Gm13981 2 117055566 to 117056012 446 + pseudogene predicted gene 13981
Gm39912 2 117059609 to 117061181 1572 - lncRNA gene predicted gene, 39912
D2Mit393 2 117072514 to 117072637 123 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 393
Cpgi12072 2 117120009 to 117122101 2092 CpG island CpG island 12072
Tssr19479 2 117120434 to 117120441 7 + TSS region transcription start site region 19479
Tssr19480 2 117120728 to 117120754 26 + TSS region transcription start site region 19480
Tssr19481 2 117120757 to 117120794 37 + TSS region transcription start site region 19481
Tssr19482 2 117120827 to 117120855 28 + TSS region transcription start site region 19482
Tssr19483 2 117120860 to 117120882 22 + TSS region transcription start site region 19483
Tssr19484 2 117120899 to 117120905 6 + TSS region transcription start site region 19484
Tssr19485 2 117120921 to 117120933 12 + TSS region transcription start site region 19485
Tssr19486 2 117120993 to 117120998 5 + TSS region transcription start site region 19486
Tssr19487 2 117121040 to 117121045 5 + TSS region transcription start site region 19487
Tssr19488 2 117121051 to 117121149 98 + TSS region transcription start site region 19488
Tssr19489 2 117121165 to 117121177 12 + TSS region transcription start site region 19489
Spred1 2 117121374 to 117182279 60905 + protein coding gene sprouty protein with EVH-1 domain 1, related sequence
Tssr19490 2 117121388 to 117121399 11 + TSS region transcription start site region 19490
Tssr19491 2 117121460 to 117121473 13 + TSS region transcription start site region 19491
Tssr25740 2 117122873 to 117122890 17 - TSS region transcription start site region 25740
Tssr19492 2 117123222 to 117123227 5 + TSS region transcription start site region 19492
Tssr19493 2 117123538 to 117123542 4 + TSS region transcription start site region 19493
Tssr19494 2 117126205 to 117126223 18 + TSS region transcription start site region 19494
Tssr19495 2 117128194 to 117128228 34 + TSS region transcription start site region 19495
Tssr19496 2 117139383 to 117139386 3 + TSS region transcription start site region 19496
Tssr19497 2 117139413 to 117139424 11 + TSS region transcription start site region 19497
D2Mit394.2 2 117139435 to 117139545 110 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 394.2
D2Mit394 2 117139520 to 117139640 120 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 394
Tssr19498 2 117145200 to 117145212 12 + TSS region transcription start site region 19498
Tssr19499 2 117157480 to 117157490 10 + TSS region transcription start site region 19499
Tssr19500 2 117157497 to 117157509 12 + TSS region transcription start site region 19500
Tssr19501 2 117157573 to 117157588 15 + TSS region transcription start site region 19501
Tssr19502 2 117157590 to 117157610 20 + TSS region transcription start site region 19502
Tssr19503 2 117159313 to 117159329 16 + TSS region transcription start site region 19503
Tssr19504 2 117159857 to 117159865 8 + TSS region transcription start site region 19504
Tssr19505 2 117161812 to 117161817 5 + TSS region transcription start site region 19505
Tssr19506 2 117162567 to 117162575 8 + TSS region transcription start site region 19506
Tssr19507 2 117178620 to 117178633 13 + TSS region transcription start site region 19507
Tssr19508 2 117179304 to 117179321 17 + TSS region transcription start site region 19508
Tssr19509 2 117179365 to 117179380 15 + TSS region transcription start site region 19509
Tssr19510 2 117179486 to 117179513 27 + TSS region transcription start site region 19510
Tssr19511 2 117181259 to 117181272 13 + TSS region transcription start site region 19511
Tssr19512 2 117181752 to 117181764 12 + TSS region transcription start site region 19512
Mir674 2 117185127 to 117185226 99 + miRNA gene microRNA 674
Gm18612 2 117238741 to 117239468 727 + pseudogene predicted gene, 18612
Rap1a-ps2 2 117240883 to 117241441 558 + pseudogene RAS related protein 1a, pseudogene 2
Gm25189 2 117248271 to 117248434 163 + snRNA gene predicted gene, 25189
Cpgi12073 2 117249592 to 117250348 756 CpG island CpG island 12073
Tssr19513 2 117249725 to 117249754 29 + TSS region transcription start site region 19513
Fam98b 2 117249739 to 117271540 21801 + protein coding gene family with sequence similarity 98, member B
Tssr19514 2 117249766 to 117249773 7 + TSS region transcription start site region 19514
Tssr19515 2 117249778 to 117249779 1 + TSS region transcription start site region 19515
Rasgrp1 2 117279993 to 117342877 62884 - protein coding gene RAS guanyl releasing protein 1
Tssr25741 2 117298152 to 117298195 43 - TSS region transcription start site region 25741
Tssr25742 2 117298926 to 117298970 44 - TSS region transcription start site region 25742
Tssr25743 2 117305772 to 117305777 5 - TSS region transcription start site region 25743
Tssr25744 2 117319610 to 117319616 6 - TSS region transcription start site region 25744
Tssr25745 2 117331092 to 117331097 5 - TSS region transcription start site region 25745
Tssr25746 2 117336394 to 117336405 11 - TSS region transcription start site region 25746
Tssr25747 2 117338477 to 117338488 11 - TSS region transcription start site region 25747
Tssr25748 2 117338527 to 117338594 67 - TSS region transcription start site region 25748
Cpgi12074 2 117341893 to 117343426 1533 CpG island CpG island 12074
Tssr19516 2 117342391 to 117342395 4 + TSS region transcription start site region 19516
Tssr25749 2 117342819 to 117342822 3 - TSS region transcription start site region 25749
Tssr25750 2 117342831 to 117342896 65 - TSS region transcription start site region 25750
Tssr25751 2 117342900 to 117342909 9 - TSS region transcription start site region 25751
Tssr25752 2 117342915 to 117342928 13 - TSS region transcription start site region 25752
Tssr25753 2 117342949 to 117342966 17 - TSS region transcription start site region 25753
Gm32020 2 117359388 to 117361242 1854 + lncRNA gene predicted gene, 32020
Gm13982 2 117414392 to 117417697 3305 - lincRNA gene predicted gene 13982
Tssr19517 2 117417780 to 117417787 7 + TSS region transcription start site region 19517
Tssr19518 2 117417791 to 117417802 11 + TSS region transcription start site region 19518
Tssr25754 2 117418720 to 117418728 8 - TSS region transcription start site region 25754
Tssr19519 2 117421646 to 117421670 24 + TSS region transcription start site region 19519
Tssr19520 2 117421674 to 117421681 7 + TSS region transcription start site region 19520
Gm32137 2 117439984 to 117450490 10506 + lncRNA gene predicted gene, 32137
Tssr19521 2 117449020 to 117449025 5 + TSS region transcription start site region 19521
D2Mit518 2 117532823 to 117532933 110 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-518
Gm32210 2 117704951 to 117758393 53442 + lncRNA gene predicted gene, 32210
Gm28183 2 117802117 to 117803664 1547 - lincRNA gene predicted gene 28183
Gm13985 2 117806678 to 117812813 6135 - lincRNA gene predicted gene 13985
4930412B13Rik 2 117821928 to 117909136 87208 + lincRNA gene RIKEN cDNA 4930412B13 gene
Gm13986 2 117857291 to 118111202 253911 - lncRNA gene predicted gene 13986
Gm32929 2 117865629 to 117867222 1593 + protein coding gene predicted gene, 32929
Tssr19522 2 117886398 to 117886401 3 + TSS region transcription start site region 19522
Tssr25755 2 117925439 to 117925458 19 - TSS region transcription start site region 25755
Tssr25756 2 117931236 to 117931250 14 - TSS region transcription start site region 25756
Tssr606 2 117962171 to 117962205 34 + TSS region transcription start site region 606
Tssr25757 2 117965782 to 117965801 19 - TSS region transcription start site region 25757
Tssr25758 2 117965889 to 117965932 43 - TSS region transcription start site region 25758
Tssr19523 2 117966066 to 117966083 17 + TSS region transcription start site region 19523
Tssr19524 2 117966089 to 117966098 9 + TSS region transcription start site region 19524
Tssr25759 2 117968801 to 117968812 11 - TSS region transcription start site region 25759
Tssr25760 2 117977161 to 117977174 13 - TSS region transcription start site region 25760
Tssr607 2 117989472 to 117989481 9 + TSS region transcription start site region 607
Tssr19525 2 117989497 to 117989513 16 + TSS region transcription start site region 19525
Tssr19526 2 117990227 to 117990243 16 + TSS region transcription start site region 19526
Ignpq1 2 117993579 to 117993788 209 QTL IgA nephropathy QTL 1
D2Mit63 2 117993579 to 117993788 209 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 63
Tssr25761 2 117996290 to 117996315 25 - TSS region transcription start site region 25761
Tssr608 2 118008037 to 118008044 7 - TSS region transcription start site region 608
Tssr25762 2 118008050 to 118008069 19 - TSS region transcription start site region 25762
Tssr609 2 118008312 to 118008334 22 + TSS region transcription start site region 609
Tssr25763 2 118011776 to 118011808 32 - TSS region transcription start site region 25763
Tssr25764 2 118011867 to 118011875 8 - TSS region transcription start site region 25764
Tssr610 2 118011893 to 118011907 14 - TSS region transcription start site region 610
Tssr611 2 118011912 to 118011921 9 - TSS region transcription start site region 611
Tssr25765 2 118012374 to 118012385 11 - TSS region transcription start site region 25765
Tssr612 2 118012463 to 118012470 7 + TSS region transcription start site region 612
Gm36979 2 118039843 to 118041480 1637 + unclassified gene predicted gene, 36979