Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:113631492-114048661

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fmn1 2 113327736 to 113716767 389031 + protein coding gene formin 1
Tssr19421 2 113640546 to 113640551 5 + TSS region transcription start site region 19421
Tssr19422 2 113640739 to 113640755 16 + TSS region transcription start site region 19422
Tssr25639 2 113641091 to 113641100 9 - TSS region transcription start site region 25639
Tssr19423 2 113641317 to 113641322 5 + TSS region transcription start site region 19423
D530043N20Rik 2 113650462 to 113650907 445 unclassified gene RIKEN cDNA D530043N20 gene
Tssr19424 2 113655458 to 113655486 28 + TSS region transcription start site region 19424
Tssr25640 2 113685002 to 113685035 33 - TSS region transcription start site region 25640
Tssr19425 2 113685083 to 113685096 13 + TSS region transcription start site region 19425
4930533B01Rik 2 113691053 to 113708550 17497 - antisense lncRNA gene RIKEN cDNA 4930533B01 gene
Tssr25641 2 113708547 to 113708552 5 - TSS region transcription start site region 25641
Tssr19426 2 113708670 to 113708673 3 + TSS region transcription start site region 19426
Tssr19427 2 113708678 to 113708702 24 + TSS region transcription start site region 19427
Grem1 2 113748674 to 113758785 10111 - protein coding gene gremlin 1, DAN family BMP antagonist
Tssr25642 2 113748873 to 113748920 47 - TSS region transcription start site region 25642
Tssr25643 2 113749055 to 113749062 7 - TSS region transcription start site region 25643
Tssr25644 2 113749098 to 113749104 6 - TSS region transcription start site region 25644
Cpgi12051 2 113757320 to 113759240 1920 CpG island CpG island 12051
Tssr25645 2 113758638 to 113758655 17 - TSS region transcription start site region 25645
Gm46756 2 113761146 to 113778244 17098 + lncRNA gene predicted gene, 46756
Scg5 2 113776362 to 113829121 52759 - protein coding gene secretogranin V
Tssr25646 2 113791918 to 113791931 13 - TSS region transcription start site region 25646
Tssr25647 2 113817974 to 113817978 4 - TSS region transcription start site region 25647
Tssr25648 2 113828744 to 113828774 30 - TSS region transcription start site region 25648
Cpgi12052 2 113828870 to 113829117 247 CpG island CpG island 12052
Tssr25649 2 113829015 to 113829068 53 - TSS region transcription start site region 25649
Tssr25650 2 113829069 to 113829110 41 - TSS region transcription start site region 25650
Tssr25651 2 113829588 to 113829604 16 - TSS region transcription start site region 25651
Tssr25652 2 113829612 to 113829639 27 - TSS region transcription start site region 25652
Tssr25653 2 113829642 to 113829676 34 - TSS region transcription start site region 25653
Tssr25654 2 113829677 to 113829685 8 - TSS region transcription start site region 25654
Arhgap11a 2 113831492 to 113848661 17169 - protein coding gene Rho GTPase activating protein 11A
Cpgi12053 2 113847899 to 113848831 932 CpG island CpG island 12053
Tssr25655 2 113848271 to 113848375 104 - TSS region transcription start site region 25655
Tssr25656 2 113848601 to 113848613 12 - TSS region transcription start site region 25656
Tssr25657 2 113848623 to 113848638 15 - TSS region transcription start site region 25657
Tssr25658 2 113848655 to 113848744 89 - TSS region transcription start site region 25658
D2Mit336 2 113862983 to 113863104 121 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 336
Gm30985 2 113893572 to 113894685 1113 - lncRNA gene predicted gene, 30985
Gm21596 2 113919758 to 113920558 800 - pseudogene predicted gene, 21596
Gm39909 2 113938034 to 113996812 58778 + lncRNA gene predicted gene, 39909
Tssr598 2 113996509 to 113996510 1 + TSS region transcription start site region 598
Gjd2 2 114009601 to 114013619 4018 - protein coding gene gap junction protein, delta 2
Cpgi12054 2 114012893 to 114014339 1446 CpG island CpG island 12054
A530058N18Rik 2 114013565 to 114032292 18727 + lncRNA gene RIKEN cDNA A530058N18 gene
Tssr25659 2 114013620 to 114013638 18 - TSS region transcription start site region 25659
Tssr599 2 114013692 to 114013727 35 + TSS region transcription start site region 599
Tssr19428 2 114036460 to 114036465 5 + TSS region transcription start site region 19428
Actc1 2 114047282 to 114052875 5593 - protein coding gene actin, alpha, cardiac muscle 1
Tssr19429 2 114047284 to 114047297 13 + TSS region transcription start site region 19429
Tssr25660 2 114047311 to 114047318 7 - TSS region transcription start site region 25660
Tssr25661 2 114047328 to 114047339 11 - TSS region transcription start site region 25661
Tssr19430 2 114047379 to 114047407 28 + TSS region transcription start site region 19430
Tssr25662 2 114047385 to 114047442 57 - TSS region transcription start site region 25662
Tssr25663 2 114047448 to 114047468 20 - TSS region transcription start site region 25663
Tssr19431 2 114047459 to 114047491 32 + TSS region transcription start site region 19431
Tssr25664 2 114047478 to 114047509 31 - TSS region transcription start site region 25664
Tssr19432 2 114047555 to 114047574 19 + TSS region transcription start site region 19432
Tssr600 2 114047562 to 114047569 7 - TSS region transcription start site region 600
Tssr601 2 114047572 to 114047580 8 - TSS region transcription start site region 601
Tssr25665 2 114047586 to 114047617 31 - TSS region transcription start site region 25665
Tssr19433 2 114048121 to 114048164 43 + TSS region transcription start site region 19433
Tssr25666 2 114048153 to 114048171 18 - TSS region transcription start site region 25666
Tssr19434 2 114048174 to 114048208 34 + TSS region transcription start site region 19434
Tssr25667 2 114048180 to 114048214 34 - TSS region transcription start site region 25667
Tssr25668 2 114048216 to 114048241 25 - TSS region transcription start site region 25668
Tssr25669 2 114048245 to 114048304 59 - TSS region transcription start site region 25669