Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:113447916-116670708

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257 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fmn1 2 113327736 to 113716767 389031 + protein coding gene formin 1
D2Mit187 2 113465716 to 113465865 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 187
Gm44465 2 113476708 to 113476821 113 - miRNA gene predicted gene, 44465
Tssr19419 2 113478892 to 113478921 29 + TSS region transcription start site region 19419
Gm13964 2 113500679 to 113504034 3355 - antisense lncRNA gene predicted gene 13964
Tssr19420 2 113525391 to 113525409 18 + TSS region transcription start site region 19420
D2Mit392 2 113543464 to 113543607 143 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 392
5430416B10Rik 2 113572053 to 113573141 1088 unclassified gene RIKEN cDNA 5430416B10 gene
D2Mit188 2 113630544 to 113630727 183 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 188
Tssr19421 2 113640546 to 113640551 5 + TSS region transcription start site region 19421
Tssr19422 2 113640739 to 113640755 16 + TSS region transcription start site region 19422
Tssr25639 2 113641091 to 113641100 9 - TSS region transcription start site region 25639
Tssr19423 2 113641317 to 113641322 5 + TSS region transcription start site region 19423
D530043N20Rik 2 113650462 to 113650907 445 unclassified gene RIKEN cDNA D530043N20 gene
Tssr19424 2 113655458 to 113655486 28 + TSS region transcription start site region 19424
Tssr25640 2 113685002 to 113685035 33 - TSS region transcription start site region 25640
Tssr19425 2 113685083 to 113685096 13 + TSS region transcription start site region 19425
4930533B01Rik 2 113691053 to 113708550 17497 - antisense lncRNA gene RIKEN cDNA 4930533B01 gene
Tssr25641 2 113708547 to 113708552 5 - TSS region transcription start site region 25641
Tssr19426 2 113708670 to 113708673 3 + TSS region transcription start site region 19426
Tssr19427 2 113708678 to 113708702 24 + TSS region transcription start site region 19427
Grem1 2 113748674 to 113758785 10111 - protein coding gene gremlin 1, DAN family BMP antagonist
Tssr25642 2 113748873 to 113748920 47 - TSS region transcription start site region 25642
Tssr25643 2 113749055 to 113749062 7 - TSS region transcription start site region 25643
Tssr25644 2 113749098 to 113749104 6 - TSS region transcription start site region 25644
Cpgi12051 2 113757320 to 113759240 1920 CpG island CpG island 12051
Tssr25645 2 113758638 to 113758655 17 - TSS region transcription start site region 25645
Gm46756 2 113761146 to 113778244 17098 + lncRNA gene predicted gene, 46756
Scg5 2 113776362 to 113829121 52759 - protein coding gene secretogranin V
Tssr25646 2 113791918 to 113791931 13 - TSS region transcription start site region 25646
Tssr25647 2 113817974 to 113817978 4 - TSS region transcription start site region 25647
Tssr25648 2 113828744 to 113828774 30 - TSS region transcription start site region 25648
Cpgi12052 2 113828870 to 113829117 247 CpG island CpG island 12052
Tssr25649 2 113829015 to 113829068 53 - TSS region transcription start site region 25649
Tssr25650 2 113829069 to 113829110 41 - TSS region transcription start site region 25650
Tssr25651 2 113829588 to 113829604 16 - TSS region transcription start site region 25651
Tssr25652 2 113829612 to 113829639 27 - TSS region transcription start site region 25652
Tssr25653 2 113829642 to 113829676 34 - TSS region transcription start site region 25653
Tssr25654 2 113829677 to 113829685 8 - TSS region transcription start site region 25654
Arhgap11a 2 113831492 to 113848661 17169 - protein coding gene Rho GTPase activating protein 11A
Cpgi12053 2 113847899 to 113848831 932 CpG island CpG island 12053
Tssr25655 2 113848271 to 113848375 104 - TSS region transcription start site region 25655
Tssr25656 2 113848601 to 113848613 12 - TSS region transcription start site region 25656
Tssr25657 2 113848623 to 113848638 15 - TSS region transcription start site region 25657
Tssr25658 2 113848655 to 113848744 89 - TSS region transcription start site region 25658
D2Mit336 2 113862983 to 113863104 121 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 336
Gm30985 2 113893572 to 113894685 1113 - lncRNA gene predicted gene, 30985
Gm21596 2 113919758 to 113920558 800 - pseudogene predicted gene, 21596
Gm39909 2 113938034 to 113996812 58778 + lncRNA gene predicted gene, 39909
Tssr598 2 113996509 to 113996510 1 + TSS region transcription start site region 598
Gjd2 2 114009601 to 114013619 4018 - protein coding gene gap junction protein, delta 2
Cpgi12054 2 114012893 to 114014339 1446 CpG island CpG island 12054
A530058N18Rik 2 114013565 to 114032292 18727 + lncRNA gene RIKEN cDNA A530058N18 gene
Tssr25659 2 114013620 to 114013638 18 - TSS region transcription start site region 25659
Tssr599 2 114013692 to 114013727 35 + TSS region transcription start site region 599
Tssr19428 2 114036460 to 114036465 5 + TSS region transcription start site region 19428
Actc1 2 114047282 to 114052875 5593 - protein coding gene actin, alpha, cardiac muscle 1
Tssr19429 2 114047284 to 114047297 13 + TSS region transcription start site region 19429
Tssr25660 2 114047311 to 114047318 7 - TSS region transcription start site region 25660
Tssr25661 2 114047328 to 114047339 11 - TSS region transcription start site region 25661
Tssr19430 2 114047379 to 114047407 28 + TSS region transcription start site region 19430
Tssr25662 2 114047385 to 114047442 57 - TSS region transcription start site region 25662
Tssr25663 2 114047448 to 114047468 20 - TSS region transcription start site region 25663
Tssr19431 2 114047459 to 114047491 32 + TSS region transcription start site region 19431
Tssr25664 2 114047478 to 114047509 31 - TSS region transcription start site region 25664
Tssr19432 2 114047555 to 114047574 19 + TSS region transcription start site region 19432
Tssr600 2 114047562 to 114047569 7 - TSS region transcription start site region 600
Tssr601 2 114047572 to 114047580 8 - TSS region transcription start site region 601
Tssr25665 2 114047586 to 114047617 31 - TSS region transcription start site region 25665
Tssr19433 2 114048121 to 114048164 43 + TSS region transcription start site region 19433
Tssr25666 2 114048153 to 114048171 18 - TSS region transcription start site region 25666
Tssr19434 2 114048174 to 114048208 34 + TSS region transcription start site region 19434
Tssr25667 2 114048180 to 114048214 34 - TSS region transcription start site region 25667
Tssr25668 2 114048216 to 114048241 25 - TSS region transcription start site region 25668
Tssr25669 2 114048245 to 114048304 59 - TSS region transcription start site region 25669
Tssr19435 2 114049169 to 114049178 9 + TSS region transcription start site region 19435
Tssr25670 2 114049201 to 114049242 41 - TSS region transcription start site region 25670
Tssr25671 2 114049244 to 114049305 61 - TSS region transcription start site region 25671
Tssr25672 2 114049313 to 114049322 9 - TSS region transcription start site region 25672
Tssr25673 2 114049348 to 114049353 5 - TSS region transcription start site region 25673
Tssr19436 2 114049550 to 114049582 32 + TSS region transcription start site region 19436
Tssr25674 2 114049552 to 114049599 47 - TSS region transcription start site region 25674
Tssr25675 2 114049600 to 114049631 31 - TSS region transcription start site region 25675
Tssr25676 2 114049637 to 114049654 17 - TSS region transcription start site region 25676
Tssr25677 2 114049664 to 114049679 15 - TSS region transcription start site region 25677
Tssr19437 2 114050285 to 114050304 19 + TSS region transcription start site region 19437
Tssr25678 2 114050336 to 114050344 8 - TSS region transcription start site region 25678
Tssr25679 2 114050345 to 114050354 9 - TSS region transcription start site region 25679
Tssr25680 2 114050358 to 114050365 7 - TSS region transcription start site region 25680
Tssr19438 2 114050368 to 114050420 52 + TSS region transcription start site region 19438
Tssr25681 2 114050405 to 114050449 44 - TSS region transcription start site region 25681
Tssr19439 2 114050433 to 114050453 20 + TSS region transcription start site region 19439
Tssr602 2 114050477 to 114050480 3 - TSS region transcription start site region 602
Tssr25682 2 114050487 to 114050488 1 - TSS region transcription start site region 25682
Tssr25683 2 114050494 to 114050497 3 - TSS region transcription start site region 25683
Tssr25684 2 114050585 to 114050615 30 - TSS region transcription start site region 25684
Tssr25685 2 114050955 to 114050966 11 - TSS region transcription start site region 25685
Tssr25686 2 114051298 to 114051312 14 - TSS region transcription start site region 25686
Tssr25687 2 114051929 to 114051982 53 - TSS region transcription start site region 25687
Tssr25688 2 114051993 to 114052027 34 - TSS region transcription start site region 25688
Tssr25689 2 114052059 to 114052071 12 - TSS region transcription start site region 25689
Tssr25690 2 114052077 to 114052087 10 - TSS region transcription start site region 25690
Tssr25691 2 114052199 to 114052203 4 - TSS region transcription start site region 25691
Tssr25692 2 114052804 to 114052818 14 - TSS region transcription start site region 25692
Tssr25693 2 114053515 to 114053562 47 - TSS region transcription start site region 25693
Tssr19440 2 114054296 to 114054303 7 + TSS region transcription start site region 19440
Tssr19441 2 114054329 to 114054340 11 + TSS region transcription start site region 19441
Tssr19442 2 114054344 to 114054353 9 + TSS region transcription start site region 19442
Tssr19443 2 114054362 to 114054385 23 + TSS region transcription start site region 19443
Tssr19444 2 114054391 to 114054415 24 + TSS region transcription start site region 19444
C130080G10Rik 2 114054396 to 114061505 7109 + antisense lncRNA gene RIKEN cDNA C130080G10 gene
Tssr19445 2 114054416 to 114054461 45 + TSS region transcription start site region 19445
Tssr19446 2 114054634 to 114054645 11 + TSS region transcription start site region 19446
Tssr19447 2 114054849 to 114054860 11 + TSS region transcription start site region 19447
Tssr19448 2 114055135 to 114055144 9 + TSS region transcription start site region 19448
Tssr19449 2 114055149 to 114055161 12 + TSS region transcription start site region 19449
Tssr19450 2 114055162 to 114055182 20 + TSS region transcription start site region 19450
Tssr19451 2 114055190 to 114055209 19 + TSS region transcription start site region 19451
Tssr19452 2 114055218 to 114055227 9 + TSS region transcription start site region 19452
Tssr603 2 114055256 to 114055266 10 + TSS region transcription start site region 603
Tssr19453 2 114055270 to 114055287 17 + TSS region transcription start site region 19453
Tssr19454 2 114055298 to 114055312 14 + TSS region transcription start site region 19454
Tssr19455 2 114055324 to 114055327 3 + TSS region transcription start site region 19455
Tssr19456 2 114056284 to 114056328 44 + TSS region transcription start site region 19456
Gm46757 2 114058253 to 114060787 2534 - lncRNA gene predicted gene, 46757
Tssr19457 2 114061163 to 114061176 13 + TSS region transcription start site region 19457
Tssr19458 2 114061184 to 114061195 11 + TSS region transcription start site region 19458
Aqr 2 114101161 to 114175339 74178 - protein coding gene aquarius
Tssr19459 2 114103327 to 114103333 6 + TSS region transcription start site region 19459
n-TDgtc2 2 114103367 to 114103438 71 + tRNA gene nuclear encoded tRNA aspartic acid 2 (anticodon GTC)
Tssr25694 2 114146973 to 114146994 21 - TSS region transcription start site region 25694
Tssr25695 2 114147042 to 114147054 12 - TSS region transcription start site region 25695
Tssr25696 2 114147066 to 114147080 14 - TSS region transcription start site region 25696
Tssr25697 2 114147097 to 114147103 6 - TSS region transcription start site region 25697
Tssr25698 2 114150504 to 114150514 10 - TSS region transcription start site region 25698
Mir7002 2 114150516 to 114150570 54 - miRNA gene microRNA 7002
D2Dcr60 2 114152182 to 114152287 105 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 60
Tssr25699 2 114157589 to 114157596 7 - TSS region transcription start site region 25699
Cpgi12055 2 114174929 to 114175417 488 CpG island CpG island 12055
Tssr25700 2 114175274 to 114175293 19 - TSS region transcription start site region 25700
Tssr25701 2 114175299 to 114175317 18 - TSS region transcription start site region 25701
Tssr25702 2 114175321 to 114175344 23 - TSS region transcription start site region 25702
Zfp770 2 114193456 to 114201432 7976 - protein coding gene zinc finger protein 770
Tssr19460 2 114200215 to 114200218 3 + TSS region transcription start site region 19460
Cpgi12056 2 114201085 to 114201657 572 CpG island CpG island 12056
Tssr25703 2 114201416 to 114201445 29 - TSS region transcription start site region 25703
Tssr25704 2 114228676 to 114228681 5 - TSS region transcription start site region 25704
Gm25103 2 114270111 to 114270428 317 + unclassified non-coding RNA gene predicted gene, 25103
Gm29234 2 114272174 to 114273435 1261 - lincRNA gene predicted gene 29234
Lmr28d 2 114292889 to 114293051 162 QTL leishmaniasis resistance 28d
Lmr28c 2 114292889 to 114293051 162 QTL leishmaniasis resistance 28c
D2Mit102 2 114292889 to 114293051 162 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 102
Actre14 2 114292889 to 118112609 3819720 QTL activity response to ethanol 14
Parms1 2 114293051 to 74693773 -39599278 QTL patched associated RMS 1
Tssr19461 2 114294493 to 114294495 2 + TSS region transcription start site region 19461
Edlmmq2 2 114379883 to 114379883 0 QTL extensor digitorum longus muscle mass QTL 2
Gmmq2 2 114379883 to 114379883 0 QTL gastrocnemius muscle mass QTL 2
Gm31146 2 114421421 to 114430323 8902 - lncRNA gene predicted gene, 31146
T2dm3 2 114457594 to 132872237 18414643 QTL type 2 diabetes mellitus 3
D2Mit274 2 114457594 to 114457722 128 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 274
Dph6 2 114516416 to 114654964 138548 - protein coding gene diphthamine biosynthesis 6
Gm13972 2 114654425 to 114697839 43414 + unclassified non-coding RNA gene predicted gene 13972
Cpgi12057 2 114654443 to 114655077 634 CpG island CpG island 12057
Tssr25705 2 114654861 to 114654915 54 - TSS region transcription start site region 25705
Tssr25706 2 114654922 to 114654939 17 - TSS region transcription start site region 25706
Tssr25707 2 114654943 to 114654969 26 - TSS region transcription start site region 25707
D2Mit275 2 114692249 to 114692432 183 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 275
Gm13975 2 114708112 to 114708893 781 + pseudogene predicted gene 13975
Gm13974 2 114854093 to 115043972 189879 + lincRNA gene predicted gene 13974
Gm28494 2 114897916 to 115220708 322792 - lincRNA gene predicted gene 28494
Gm28492 2 114938570 to 114939588 1018 + sense intronic lncRNA gene predicted gene 28492
Gm13973 2 115036419 to 115037312 893 - pseudogene predicted gene 13973
D2Mit101 2 115079495 to 115079684 189 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 101
Dntcs2 2 115079684 to 40995481 -74084203 QTL dental caries susceptibility 2
Gm28493 2 115135550 to 115137786 2236 + lincRNA gene predicted gene 28493
4930528P14Rik 2 115329266 to 115344280 15014 - lincRNA gene RIKEN cDNA 4930528P14 gene
Gm18967 2 115333183 to 115333743 560 + pseudogene predicted gene, 18967
4930546E12Rik 2 115333947 to 115334537 590 unclassified gene RIKEN cDNA 4930546E12 gene
Tssr25708 2 115344276 to 115344283 7 - TSS region transcription start site region 25708
Tssr25709 2 115344287 to 115344297 10 - TSS region transcription start site region 25709
Gm13976 2 115344385 to 115346968 2583 + lincRNA gene predicted gene 13976
Gm31351 2 115371171 to 115379216 8045 - lncRNA gene predicted gene, 31351
Gm31413 2 115380093 to 115383357 3264 - lncRNA gene predicted gene, 31413
Gm39910 2 115402078 to 115410267 8189 - lncRNA gene predicted gene, 39910
3110099E03Rik 2 115493513 to 115512201 18688 - lincRNA gene RIKEN cDNA 3110099E03 gene
Gm39911 2 115550712 to 115552808 2096 + lncRNA gene predicted gene, 39911
Gm13977 2 115556786 to 115581555 24769 - antisense lncRNA gene predicted gene 13977
Cpgi12058 2 115581226 to 115581874 648 CpG island CpG island 12058
Tssr19462 2 115581651 to 115581665 14 + TSS region transcription start site region 19462
Tssr19463 2 115581667 to 115581743 76 + TSS region transcription start site region 19463
BC052040 2 115581716 to 115778768 197052 + protein coding gene cDNA sequence BC052040
Tssr19464 2 115581765 to 115581792 27 + TSS region transcription start site region 19464
Tssr19465 2 115581795 to 115581822 27 + TSS region transcription start site region 19465
Tssr19466 2 115599185 to 115599200 15 + TSS region transcription start site region 19466
Tbvq2 2 115600000 to 124900000 9300000 QTL trabecular bone volume QTL 2
Mir1951 2 115638725 to 115638813 88 + miRNA gene microRNA 1951
D2Mit335 2 115687653 to 115687832 179 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 335
D230044P21Rik 2 115695866 to 115701068 5202 unclassified gene RIKEN cDNA D230044P21 gene
Gm31474 2 115727921 to 115743203 15282 - lncRNA gene predicted gene, 31474
5730575I04Rik 2 115768001 to 115770011 2010 unclassified gene RIKEN cDNA 5730575I04 gene