Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:11308985-11638996

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38171 2 11315372 to 11319874 4502 - lincRNA gene predicted gene, 38171
Gm31902 2 11319591 to 11334161 14570 - lncRNA gene predicted gene, 31902
Tssr22607 2 11332551 to 11332567 16 - TSS region transcription start site region 22607
Tssr22608 2 11332571 to 11332587 16 - TSS region transcription start site region 22608
Tssr404 2 11332593 to 11332616 23 - TSS region transcription start site region 404
Tssr405 2 11332788 to 11332802 14 + TSS region transcription start site region 405
Tssr406 2 11332811 to 11332829 18 + TSS region transcription start site region 406
Gm37851 2 11332825 to 11333713 888 + unclassified gene predicted gene, 37851
Tssr22609 2 11333375 to 11333398 23 - TSS region transcription start site region 22609
8030442B05Rik 2 11338366 to 11398500 60134 - lincRNA gene RIKEN cDNA 8030442B05 gene
Tssr16119 2 11339325 to 11339341 16 + TSS region transcription start site region 16119
Tssr16120 2 11339461 to 11339501 40 + TSS region transcription start site region 16120
Gm13293 2 11339489 to 11344106 4617 + lincRNA gene predicted gene 13293
Tssr16121 2 11339505 to 11339526 21 + TSS region transcription start site region 16121
Tssr16122 2 11339541 to 11339546 5 + TSS region transcription start site region 16122
Tssr16123 2 11339731 to 11339750 19 + TSS region transcription start site region 16123
Gm37730 2 11365241 to 11367451 2210 - unclassified gene predicted gene, 37730
Tssr22610 2 11375039 to 11375082 43 - TSS region transcription start site region 22610
4933403L11Rik 2 11383787 to 11384907 1120 - unclassified gene RIKEN cDNA 4933403L11 gene
Gm13291 2 11385003 to 11387064 2061 + lincRNA gene predicted gene 13291
Tssr22611 2 11398495 to 11398517 22 - TSS region transcription start site region 22611
Tssr22612 2 11398525 to 11398538 13 - TSS region transcription start site region 22612
Gm13292 2 11409031 to 11410030 999 - pseudogene predicted gene 13292
Gm13296 2 11420224 to 11421220 996 + pseudogene predicted gene 13296
Gm31990 2 11422527 to 11447447 24920 - lncRNA gene predicted gene, 31990
Tssr22613 2 11425702 to 11425705 3 - TSS region transcription start site region 22613
Pfkfb3 2 11471430 to 11554071 82641 - protein coding gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
Tssr22614 2 11473753 to 11473796 43 - TSS region transcription start site region 22614
Tssr22615 2 11473892 to 11473938 46 - TSS region transcription start site region 22615
Tssr22616 2 11473964 to 11473980 16 - TSS region transcription start site region 22616
Tssr22617 2 11473985 to 11473996 11 - TSS region transcription start site region 22617
Tssr22618 2 11474036 to 11474044 8 - TSS region transcription start site region 22618
Tssr22619 2 11474206 to 11474219 13 - TSS region transcription start site region 22619
Tssr22620 2 11475827 to 11475829 2 - TSS region transcription start site region 22620
Tssr22621 2 11480349 to 11480362 13 - TSS region transcription start site region 22621
Tssr22622 2 11484772 to 11484791 19 - TSS region transcription start site region 22622
Tssr22623 2 11492094 to 11492108 14 - TSS region transcription start site region 22623
Tssr22624 2 11492611 to 11492648 37 - TSS region transcription start site region 22624
Tssr22625 2 11492652 to 11492663 11 - TSS region transcription start site region 22625
Tssr22626 2 11493939 to 11493969 30 - TSS region transcription start site region 22626
Tssr22627 2 11494009 to 11494020 11 - TSS region transcription start site region 22627
Tssr22628 2 11498380 to 11498400 20 - TSS region transcription start site region 22628
Tssr22629 2 11498401 to 11498414 13 - TSS region transcription start site region 22629
Tssr22630 2 11498443 to 11498454 11 - TSS region transcription start site region 22630
Tssr22631 2 11499561 to 11499565 4 - TSS region transcription start site region 22631
Tssr22632 2 11499913 to 11499927 14 - TSS region transcription start site region 22632
Cpgi11200 2 11501067 to 11502634 1567 CpG island CpG island 11200
Tssr22633 2 11501717 to 11501728 11 - TSS region transcription start site region 22633
Tssr22634 2 11502032 to 11502049 17 - TSS region transcription start site region 22634
Tssr22635 2 11502050 to 11502061 11 - TSS region transcription start site region 22635
Tssr22636 2 11502069 to 11502080 11 - TSS region transcription start site region 22636
Tssr22637 2 11502092 to 11502126 34 - TSS region transcription start site region 22637
Cpgi11201 2 11502837 to 11503446 609 CpG island CpG island 11201
Tssr22638 2 11513174 to 11513196 22 - TSS region transcription start site region 22638
Tssr22639 2 11513212 to 11513229 17 - TSS region transcription start site region 22639
Gm10851 2 11521524 to 11529986 8462 + antisense lncRNA gene predicted gene 10851
Tssr16124 2 11521700 to 11521714 14 + TSS region transcription start site region 16124
Tssr407 2 11522026 to 11522048 22 + TSS region transcription start site region 407
Tssr16125 2 11522076 to 11522095 19 + TSS region transcription start site region 16125
D2Mit357 2 11523588 to 11523712 124 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 357
Gm37975 2 11532596 to 11534694 2098 - unclassified gene predicted gene, 37975
Cpgi11202 2 11535333 to 11535874 541 CpG island CpG island 11202
Tssr22640 2 11535519 to 11535557 38 - TSS region transcription start site region 22640
Tssr16126 2 11535710 to 11535721 11 + TSS region transcription start site region 16126
Cpgi11203 2 11553210 to 11554216 1006 CpG island CpG island 11203
Tssr22641 2 11553893 to 11553961 68 - TSS region transcription start site region 22641
Tssr16127 2 11554023 to 11554040 17 + TSS region transcription start site region 16127
Cpgi11204 2 11563375 to 11563534 159 CpG island CpG island 11204
Rbm17 2 11585439 to 11603199 17760 - protein coding gene RNA binding motif protein 17
Tssr22642 2 11596716 to 11596745 29 - TSS region transcription start site region 22642
Cpgi11205 2 11602496 to 11603442 946 CpG island CpG island 11205
Tssr22643 2 11603192 to 11603268 76 - TSS region transcription start site region 22643
Tssr22644 2 11605035 to 11605038 3 - TSS region transcription start site region 22644
Gm13260 2 11607417 to 11608537 1120 - pseudogene predicted gene 13260
Tssr22645 2 11620497 to 11620523 26 - TSS region transcription start site region 22645
Gm17490 2 11625606 to 11626264 658 - protein coding gene predicted gene, 17490
Tssr16128 2 11626173 to 11626202 29 + TSS region transcription start site region 16128
Tssr22646 2 11634903 to 11634908 5 - TSS region transcription start site region 22646
Tssr22647 2 11635093 to 11635097 4 - TSS region transcription start site region 22647
Tssr22648 2 11636208 to 11636224 16 - TSS region transcription start site region 22648
Tssr22649 2 11637184 to 11637205 21 - TSS region transcription start site region 22649
Tssr22650 2 11637252 to 11637285 33 - TSS region transcription start site region 22650