Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:112782587-113922911

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ryr3 2 112631355 to 113217096 585741 - protein coding gene ryanodine receptor 3
D2Mit352.1 2 112887950 to 112888125 175 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 352.1
D2Mit352 2 112888098 to 112888218 120 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 352
Tssr19397 2 112943516 to 112943519 3 + TSS region transcription start site region 19397
D2Dcr59 2 113050276 to 113050371 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 59
D2Mit481 2 113172764 to 113172875 111 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 481
Cpgi12049 2 113216439 to 113217658 1219 CpG island CpG island 12049
Tssr25636 2 113217026 to 113217039 13 - TSS region transcription start site region 25636
Tssr25637 2 113217052 to 113217094 42 - TSS region transcription start site region 25637
Tssr19398 2 113285717 to 113285719 2 + TSS region transcription start site region 19398
Tssr19399 2 113285731 to 113285749 18 + TSS region transcription start site region 19399
Tmco5b 2 113285732 to 113297190 11458 + protein coding gene transmembrane and coiled-coil domains 5B
Gm26505 2 113288273 to 113288438 165 + snRNA gene predicted gene, 26505
D2Mit390 2 113326334 to 113326443 109 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 390
Cpgi12050 2 113327286 to 113328008 722 CpG island CpG island 12050
Tssr19400 2 113327711 to 113327753 42 + TSS region transcription start site region 19400
Fmn1 2 113327736 to 113716767 389031 + protein coding gene formin 1
Tssr19401 2 113327756 to 113327781 25 + TSS region transcription start site region 19401
Tssr25638 2 113348010 to 113348022 12 - TSS region transcription start site region 25638
A930030B21Rik 2 113352587 to 113352911 324 unclassified gene RIKEN cDNA A930030B21 gene
Tssr19402 2 113364545 to 113364570 25 + TSS region transcription start site region 19402
Tssr19403 2 113365494 to 113365506 12 + TSS region transcription start site region 19403
Tssr19404 2 113365527 to 113365539 12 + TSS region transcription start site region 19404
Gm13967 2 113384681 to 113385199 518 + pseudogene predicted gene 13967
Gm13963 2 113387107 to 113441094 53987 - antisense lncRNA gene predicted gene 13963
Gm13965 2 113400459 to 113410250 9791 + unclassified non-coding RNA gene predicted gene 13965
Tssr19405 2 113405103 to 113405112 9 + TSS region transcription start site region 19405
Tssr19406 2 113405114 to 113405127 13 + TSS region transcription start site region 19406
Tssr19407 2 113405131 to 113405157 26 + TSS region transcription start site region 19407
Tssr19408 2 113405174 to 113405192 18 + TSS region transcription start site region 19408
Tssr19409 2 113405197 to 113405201 4 + TSS region transcription start site region 19409
Tssr19410 2 113405216 to 113405225 9 + TSS region transcription start site region 19410
Tssr19411 2 113439780 to 113439781 1 + TSS region transcription start site region 19411
Tssr19412 2 113440052 to 113440055 3 + TSS region transcription start site region 19412
Gm13966 2 113440681 to 113442304 1623 - antisense lncRNA gene predicted gene 13966
Tssr19413 2 113440853 to 113440891 38 + TSS region transcription start site region 19413
Tssr19414 2 113440896 to 113440952 56 + TSS region transcription start site region 19414
Tssr19415 2 113440978 to 113441000 22 + TSS region transcription start site region 19415
Tssr19416 2 113441042 to 113441058 16 + TSS region transcription start site region 19416
Tssr19417 2 113441068 to 113441079 11 + TSS region transcription start site region 19417
Tssr19418 2 113442334 to 113442350 16 + TSS region transcription start site region 19418
D2Mit483 2 113445055 to 113445178 123 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 483
D2Mit187 2 113465716 to 113465865 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 187
Gm44465 2 113476708 to 113476821 113 - miRNA gene predicted gene, 44465
Tssr19419 2 113478892 to 113478921 29 + TSS region transcription start site region 19419
Gm13964 2 113500679 to 113504034 3355 - antisense lncRNA gene predicted gene 13964
Tssr19420 2 113525391 to 113525409 18 + TSS region transcription start site region 19420
D2Mit392 2 113543464 to 113543607 143 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 392
5430416B10Rik 2 113572053 to 113573141 1088 unclassified gene RIKEN cDNA 5430416B10 gene
D2Mit188 2 113630544 to 113630727 183 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 188
Tssr19421 2 113640546 to 113640551 5 + TSS region transcription start site region 19421
Tssr19422 2 113640739 to 113640755 16 + TSS region transcription start site region 19422
Tssr25639 2 113641091 to 113641100 9 - TSS region transcription start site region 25639
Tssr19423 2 113641317 to 113641322 5 + TSS region transcription start site region 19423
D530043N20Rik 2 113650462 to 113650907 445 unclassified gene RIKEN cDNA D530043N20 gene
Tssr19424 2 113655458 to 113655486 28 + TSS region transcription start site region 19424
Tssr25640 2 113685002 to 113685035 33 - TSS region transcription start site region 25640
Tssr19425 2 113685083 to 113685096 13 + TSS region transcription start site region 19425
4930533B01Rik 2 113691053 to 113708550 17497 - antisense lncRNA gene RIKEN cDNA 4930533B01 gene
Tssr25641 2 113708547 to 113708552 5 - TSS region transcription start site region 25641
Tssr19426 2 113708670 to 113708673 3 + TSS region transcription start site region 19426
Tssr19427 2 113708678 to 113708702 24 + TSS region transcription start site region 19427
Grem1 2 113748674 to 113758785 10111 - protein coding gene gremlin 1, DAN family BMP antagonist
Tssr25642 2 113748873 to 113748920 47 - TSS region transcription start site region 25642
Tssr25643 2 113749055 to 113749062 7 - TSS region transcription start site region 25643
Tssr25644 2 113749098 to 113749104 6 - TSS region transcription start site region 25644
Cpgi12051 2 113757320 to 113759240 1920 CpG island CpG island 12051
Tssr25645 2 113758638 to 113758655 17 - TSS region transcription start site region 25645
Gm46756 2 113761146 to 113778244 17098 + lncRNA gene predicted gene, 46756
Scg5 2 113776362 to 113829121 52759 - protein coding gene secretogranin V
Tssr25646 2 113791918 to 113791931 13 - TSS region transcription start site region 25646
Tssr25647 2 113817974 to 113817978 4 - TSS region transcription start site region 25647
Tssr25648 2 113828744 to 113828774 30 - TSS region transcription start site region 25648
Cpgi12052 2 113828870 to 113829117 247 CpG island CpG island 12052
Tssr25649 2 113829015 to 113829068 53 - TSS region transcription start site region 25649
Tssr25650 2 113829069 to 113829110 41 - TSS region transcription start site region 25650
Tssr25651 2 113829588 to 113829604 16 - TSS region transcription start site region 25651
Tssr25652 2 113829612 to 113829639 27 - TSS region transcription start site region 25652
Tssr25653 2 113829642 to 113829676 34 - TSS region transcription start site region 25653
Tssr25654 2 113829677 to 113829685 8 - TSS region transcription start site region 25654
Arhgap11a 2 113831492 to 113848661 17169 - protein coding gene Rho GTPase activating protein 11A
Cpgi12053 2 113847899 to 113848831 932 CpG island CpG island 12053
Tssr25655 2 113848271 to 113848375 104 - TSS region transcription start site region 25655
Tssr25656 2 113848601 to 113848613 12 - TSS region transcription start site region 25656
Tssr25657 2 113848623 to 113848638 15 - TSS region transcription start site region 25657
Tssr25658 2 113848655 to 113848744 89 - TSS region transcription start site region 25658
D2Mit336 2 113862983 to 113863104 121 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 336
Gm30985 2 113893572 to 113894685 1113 - lncRNA gene predicted gene, 30985
Gm21596 2 113919758 to 113920558 800 - pseudogene predicted gene, 21596