Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:11250172-12188985

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165 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prkcq 2 11172108 to 11301222 129114 + protein coding gene protein kinase C, theta
Tssr16115 2 11250442 to 11250449 7 + TSS region transcription start site region 16115
Tssr16116 2 11250462 to 11250474 12 + TSS region transcription start site region 16116
Tssr16117 2 11250475 to 11250485 10 + TSS region transcription start site region 16117
Tssr16118 2 11250487 to 11250498 11 + TSS region transcription start site region 16118
Tssr22606 2 11259515 to 11259521 6 - TSS region transcription start site region 22606
Cpgi11199 2 11290137 to 11290698 561 CpG island CpG island 11199
Gm38171 2 11315372 to 11319874 4502 - lincRNA gene predicted gene, 38171
Gm31902 2 11319591 to 11334161 14570 - lncRNA gene predicted gene, 31902
Tssr22607 2 11332551 to 11332567 16 - TSS region transcription start site region 22607
Tssr22608 2 11332571 to 11332587 16 - TSS region transcription start site region 22608
Tssr404 2 11332593 to 11332616 23 - TSS region transcription start site region 404
Tssr405 2 11332788 to 11332802 14 + TSS region transcription start site region 405
Tssr406 2 11332811 to 11332829 18 + TSS region transcription start site region 406
Gm37851 2 11332825 to 11333713 888 + unclassified gene predicted gene, 37851
Tssr22609 2 11333375 to 11333398 23 - TSS region transcription start site region 22609
8030442B05Rik 2 11338366 to 11398500 60134 - lincRNA gene RIKEN cDNA 8030442B05 gene
Tssr16119 2 11339325 to 11339341 16 + TSS region transcription start site region 16119
Tssr16120 2 11339461 to 11339501 40 + TSS region transcription start site region 16120
Gm13293 2 11339489 to 11344106 4617 + lincRNA gene predicted gene 13293
Tssr16121 2 11339505 to 11339526 21 + TSS region transcription start site region 16121
Tssr16122 2 11339541 to 11339546 5 + TSS region transcription start site region 16122
Tssr16123 2 11339731 to 11339750 19 + TSS region transcription start site region 16123
Gm37730 2 11365241 to 11367451 2210 - unclassified gene predicted gene, 37730
Tssr22610 2 11375039 to 11375082 43 - TSS region transcription start site region 22610
4933403L11Rik 2 11383787 to 11384907 1120 - unclassified gene RIKEN cDNA 4933403L11 gene
Gm13291 2 11385003 to 11387064 2061 + lincRNA gene predicted gene 13291
Tssr22611 2 11398495 to 11398517 22 - TSS region transcription start site region 22611
Tssr22612 2 11398525 to 11398538 13 - TSS region transcription start site region 22612
Gm13292 2 11409031 to 11410030 999 - pseudogene predicted gene 13292
Gm13296 2 11420224 to 11421220 996 + pseudogene predicted gene 13296
Gm31990 2 11422527 to 11447447 24920 - lncRNA gene predicted gene, 31990
Tssr22613 2 11425702 to 11425705 3 - TSS region transcription start site region 22613
Pfkfb3 2 11471430 to 11554071 82641 - protein coding gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
Tssr22614 2 11473753 to 11473796 43 - TSS region transcription start site region 22614
Tssr22615 2 11473892 to 11473938 46 - TSS region transcription start site region 22615
Tssr22616 2 11473964 to 11473980 16 - TSS region transcription start site region 22616
Tssr22617 2 11473985 to 11473996 11 - TSS region transcription start site region 22617
Tssr22618 2 11474036 to 11474044 8 - TSS region transcription start site region 22618
Tssr22619 2 11474206 to 11474219 13 - TSS region transcription start site region 22619
Tssr22620 2 11475827 to 11475829 2 - TSS region transcription start site region 22620
Tssr22621 2 11480349 to 11480362 13 - TSS region transcription start site region 22621
Tssr22622 2 11484772 to 11484791 19 - TSS region transcription start site region 22622
Tssr22623 2 11492094 to 11492108 14 - TSS region transcription start site region 22623
Tssr22624 2 11492611 to 11492648 37 - TSS region transcription start site region 22624
Tssr22625 2 11492652 to 11492663 11 - TSS region transcription start site region 22625
Tssr22626 2 11493939 to 11493969 30 - TSS region transcription start site region 22626
Tssr22627 2 11494009 to 11494020 11 - TSS region transcription start site region 22627
Tssr22628 2 11498380 to 11498400 20 - TSS region transcription start site region 22628
Tssr22629 2 11498401 to 11498414 13 - TSS region transcription start site region 22629
Tssr22630 2 11498443 to 11498454 11 - TSS region transcription start site region 22630
Tssr22631 2 11499561 to 11499565 4 - TSS region transcription start site region 22631
Tssr22632 2 11499913 to 11499927 14 - TSS region transcription start site region 22632
Cpgi11200 2 11501067 to 11502634 1567 CpG island CpG island 11200
Tssr22633 2 11501717 to 11501728 11 - TSS region transcription start site region 22633
Tssr22634 2 11502032 to 11502049 17 - TSS region transcription start site region 22634
Tssr22635 2 11502050 to 11502061 11 - TSS region transcription start site region 22635
Tssr22636 2 11502069 to 11502080 11 - TSS region transcription start site region 22636
Tssr22637 2 11502092 to 11502126 34 - TSS region transcription start site region 22637
Cpgi11201 2 11502837 to 11503446 609 CpG island CpG island 11201
Tssr22638 2 11513174 to 11513196 22 - TSS region transcription start site region 22638
Tssr22639 2 11513212 to 11513229 17 - TSS region transcription start site region 22639
Gm10851 2 11521524 to 11529986 8462 + antisense lncRNA gene predicted gene 10851
Tssr16124 2 11521700 to 11521714 14 + TSS region transcription start site region 16124
Tssr407 2 11522026 to 11522048 22 + TSS region transcription start site region 407
Tssr16125 2 11522076 to 11522095 19 + TSS region transcription start site region 16125
D2Mit357 2 11523588 to 11523712 124 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 357
Gm37975 2 11532596 to 11534694 2098 - unclassified gene predicted gene, 37975
Cpgi11202 2 11535333 to 11535874 541 CpG island CpG island 11202
Tssr22640 2 11535519 to 11535557 38 - TSS region transcription start site region 22640
Tssr16126 2 11535710 to 11535721 11 + TSS region transcription start site region 16126
Cpgi11203 2 11553210 to 11554216 1006 CpG island CpG island 11203
Tssr22641 2 11553893 to 11553961 68 - TSS region transcription start site region 22641
Tssr16127 2 11554023 to 11554040 17 + TSS region transcription start site region 16127
Cpgi11204 2 11563375 to 11563534 159 CpG island CpG island 11204
Rbm17 2 11585439 to 11603199 17760 - protein coding gene RNA binding motif protein 17
Tssr22642 2 11596716 to 11596745 29 - TSS region transcription start site region 22642
Cpgi11205 2 11602496 to 11603442 946 CpG island CpG island 11205
Tssr22643 2 11603192 to 11603268 76 - TSS region transcription start site region 22643
Tssr22644 2 11605035 to 11605038 3 - TSS region transcription start site region 22644
Gm13260 2 11607417 to 11608537 1120 - pseudogene predicted gene 13260
Tssr22645 2 11620497 to 11620523 26 - TSS region transcription start site region 22645
Gm17490 2 11625606 to 11626264 658 - protein coding gene predicted gene, 17490
Tssr16128 2 11626173 to 11626202 29 + TSS region transcription start site region 16128
Tssr22646 2 11634903 to 11634908 5 - TSS region transcription start site region 22646
Tssr22647 2 11635093 to 11635097 4 - TSS region transcription start site region 22647
Tssr22648 2 11636208 to 11636224 16 - TSS region transcription start site region 22648
Tssr22649 2 11637184 to 11637205 21 - TSS region transcription start site region 22649
Tssr22650 2 11637252 to 11637285 33 - TSS region transcription start site region 22650
Tssr16129 2 11642786 to 11642798 12 + TSS region transcription start site region 16129
Tssr16130 2 11642799 to 11642812 13 + TSS region transcription start site region 16130
Il2ra 2 11642807 to 11693193 50386 + protein coding gene interleukin 2 receptor, alpha chain
Tssr16131 2 11642842 to 11642863 21 + TSS region transcription start site region 16131
Tssr16132 2 11645494 to 11645506 12 + TSS region transcription start site region 16132
Tssr16133 2 11645730 to 11645770 40 + TSS region transcription start site region 16133
Tssr22651 2 11646541 to 11646546 5 - TSS region transcription start site region 22651
Tssr22652 2 11646580 to 11646585 5 - TSS region transcription start site region 22652
Tssr22653 2 11651496 to 11651500 4 - TSS region transcription start site region 22653
Tssr16134 2 11653556 to 11653561 5 + TSS region transcription start site region 16134
Tssr16135 2 11653588 to 11653598 10 + TSS region transcription start site region 16135
Tssr16136 2 11654035 to 11654046 11 + TSS region transcription start site region 16136
Tssr16137 2 11654254 to 11654267 13 + TSS region transcription start site region 16137
Tssr22654 2 11655112 to 11655124 12 - TSS region transcription start site region 22654
Tssr16138 2 11655536 to 11655550 14 + TSS region transcription start site region 16138
Tssr22655 2 11659792 to 11659809 17 - TSS region transcription start site region 22655
Tssr16139 2 11666407 to 11666413 6 + TSS region transcription start site region 16139
Tssr16140 2 11667567 to 11667570 3 + TSS region transcription start site region 16140
Tssr22656 2 11671120 to 11671126 6 - TSS region transcription start site region 22656
Tssr22657 2 11676923 to 11676944 21 - TSS region transcription start site region 22657
Tssr16141 2 11678188 to 11678207 19 + TSS region transcription start site region 16141
Gm39760 2 11682688 to 11694588 11900 - lncRNA gene predicted gene, 39760
Gm37881 2 11683126 to 11683546 420 + unclassified gene predicted gene, 37881
Tssr16142 2 11689808 to 11689825 17 + TSS region transcription start site region 16142
Tssr16143 2 11689844 to 11689855 11 + TSS region transcription start site region 16143
Tssr16144 2 11689862 to 11689880 18 + TSS region transcription start site region 16144
Tssr16145 2 11689884 to 11689901 17 + TSS region transcription start site region 16145
Tssr16146 2 11689941 to 11689975 34 + TSS region transcription start site region 16146
Tssr16147 2 11690001 to 11690023 22 + TSS region transcription start site region 16147
Tssr16148 2 11690060 to 11690091 31 + TSS region transcription start site region 16148
Tssr16149 2 11690096 to 11690134 38 + TSS region transcription start site region 16149
Tssr16150 2 11690140 to 11690191 51 + TSS region transcription start site region 16150
Tssr16151 2 11690640 to 11690655 15 + TSS region transcription start site region 16151
Tssr16152 2 11690946 to 11691024 78 + TSS region transcription start site region 16152
Gm39759 2 11693584 to 11699526 5942 + lncRNA gene predicted gene, 39759
Tssr16153 2 11697993 to 11697997 4 + TSS region transcription start site region 16153
Il15ra 2 11705169 to 11733985 28816 + protein coding gene interleukin 15 receptor, alpha chain
Cpgi11206 2 11705315 to 11706286 971 CpG island CpG island 11206
Tssr16154 2 11705320 to 11705346 26 + TSS region transcription start site region 16154
Tssr16155 2 11705355 to 11705375 20 + TSS region transcription start site region 16155
Tssr16156 2 11705390 to 11705401 11 + TSS region transcription start site region 16156
Tssr16157 2 11705437 to 11705448 11 + TSS region transcription start site region 16157
Tssr16158 2 11705459 to 11705464 5 + TSS region transcription start site region 16158
Tssr16159 2 11705730 to 11705767 37 + TSS region transcription start site region 16159
Tssr16160 2 11705823 to 11705832 9 + TSS region transcription start site region 16160
Tssr16161 2 11712038 to 11712043 5 + TSS region transcription start site region 16161
Tssr16162 2 11713230 to 11713242 12 + TSS region transcription start site region 16162
Tssr16163 2 11723253 to 11723276 23 + TSS region transcription start site region 16163
Tssr16164 2 11723315 to 11723319 4 + TSS region transcription start site region 16164
Tssr16165 2 11724367 to 11724373 6 + TSS region transcription start site region 16165
Tssr16166 2 11725001 to 11725014 13 + TSS region transcription start site region 16166
Tssr16167 2 11725062 to 11725076 14 + TSS region transcription start site region 16167
Tssr16168 2 11725095 to 11725108 13 + TSS region transcription start site region 16168
Tssr16169 2 11725114 to 11725130 16 + TSS region transcription start site region 16169
Fbh1 2 11742573 to 11777582 35009 - protein coding gene F-box DNA helicase 1
Gm46731 2 11743779 to 11745188 1409 - protein coding gene predicted gene, 46731
Cpgi11207 2 11777106 to 11779029 1923 CpG island CpG island 11207
Tssr22658 2 11777486 to 11777561 75 - TSS region transcription start site region 22658
Tssr22659 2 11777570 to 11777581 11 - TSS region transcription start site region 22659
Tssr16170 2 11777766 to 11777797 31 + TSS region transcription start site region 16170
Ankrd16 2 11777876 to 11790329 12453 + protein coding gene ankyrin repeat domain 16
Tssr16171 2 11777912 to 11777939 27 + TSS region transcription start site region 16171
Tssr16172 2 11778480 to 11778586 106 + TSS region transcription start site region 16172
D2Mit315 2 11898379 to 11898490 111 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 315
Gm34768 2 11900082 to 11910310 10228 + pseudogene predicted gene, 34768
Gm32204 2 11925843 to 11927868 2025 + protein coding gene predicted gene, 32204
Cpgi11208 2 12002238 to 12002412 174 CpG island CpG island 11208
Tssr22660 2 12013904 to 12013911 7 - TSS region transcription start site region 22660
D2Ertd357e 2 12068475 to 12068705 230 DNA segment DNA segment, Chr 2, ERATO Doi 357, expressed
Gm13310 2 12082612 to 12083992 1380 - pseudogene predicted gene 13310
Itga8 2 12106632 to 12301920 195288 - protein coding gene integrin alpha 8
Tssr22661 2 12111119 to 12111124 5 - TSS region transcription start site region 22661
D2Mit116 2 12124726 to 12124897 171 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 116
Cia23 2 12124726 to 66726109 54601383 QTL collagen induced arthritis QTL 23
Tssr22662 2 12128535 to 12128552 17 - TSS region transcription start site region 22662
Gm37701 2 12128643 to 12129742 1099 - unclassified gene predicted gene, 37701