Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:11237788-11427802

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prkcq 2 11172108 to 11301222 129114 + protein coding gene protein kinase C, theta
Tssr16115 2 11250442 to 11250449 7 + TSS region transcription start site region 16115
Tssr16116 2 11250462 to 11250474 12 + TSS region transcription start site region 16116
Tssr16117 2 11250475 to 11250485 10 + TSS region transcription start site region 16117
Tssr16118 2 11250487 to 11250498 11 + TSS region transcription start site region 16118
Tssr22606 2 11259515 to 11259521 6 - TSS region transcription start site region 22606
Cpgi11199 2 11290137 to 11290698 561 CpG island CpG island 11199
Gm38171 2 11315372 to 11319874 4502 - lincRNA gene predicted gene, 38171
Gm31902 2 11319591 to 11334161 14570 - lncRNA gene predicted gene, 31902
Tssr22607 2 11332551 to 11332567 16 - TSS region transcription start site region 22607
Tssr22608 2 11332571 to 11332587 16 - TSS region transcription start site region 22608
Tssr404 2 11332593 to 11332616 23 - TSS region transcription start site region 404
Tssr405 2 11332788 to 11332802 14 + TSS region transcription start site region 405
Tssr406 2 11332811 to 11332829 18 + TSS region transcription start site region 406
Gm37851 2 11332825 to 11333713 888 + unclassified gene predicted gene, 37851
Tssr22609 2 11333375 to 11333398 23 - TSS region transcription start site region 22609
8030442B05Rik 2 11338366 to 11398500 60134 - lincRNA gene RIKEN cDNA 8030442B05 gene
Tssr16119 2 11339325 to 11339341 16 + TSS region transcription start site region 16119
Tssr16120 2 11339461 to 11339501 40 + TSS region transcription start site region 16120
Gm13293 2 11339489 to 11344106 4617 + lincRNA gene predicted gene 13293
Tssr16121 2 11339505 to 11339526 21 + TSS region transcription start site region 16121
Tssr16122 2 11339541 to 11339546 5 + TSS region transcription start site region 16122
Tssr16123 2 11339731 to 11339750 19 + TSS region transcription start site region 16123
Gm37730 2 11365241 to 11367451 2210 - unclassified gene predicted gene, 37730
Tssr22610 2 11375039 to 11375082 43 - TSS region transcription start site region 22610
4933403L11Rik 2 11383787 to 11384907 1120 - unclassified gene RIKEN cDNA 4933403L11 gene
Gm13291 2 11385003 to 11387064 2061 + lincRNA gene predicted gene 13291
Tssr22611 2 11398495 to 11398517 22 - TSS region transcription start site region 22611
Tssr22612 2 11398525 to 11398538 13 - TSS region transcription start site region 22612
Gm13292 2 11409031 to 11410030 999 - pseudogene predicted gene 13292
Gm13296 2 11420224 to 11421220 996 + pseudogene predicted gene 13296
Gm31990 2 11422527 to 11447447 24920 - lncRNA gene predicted gene, 31990
Tssr22613 2 11425702 to 11425705 3 - TSS region transcription start site region 22613