Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:112232334-114652350

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298 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi12042 2 112239072 to 112240727 1655 CpG island CpG island 12042
Tssr19341 2 112239364 to 112239409 45 + TSS region transcription start site region 19341
Tssr19342 2 112239474 to 112239508 34 + TSS region transcription start site region 19342
Tssr19343 2 112239755 to 112239764 9 + TSS region transcription start site region 19343
Tssr19344 2 112239784 to 112239795 11 + TSS region transcription start site region 19344
Tssr19345 2 112239815 to 112239860 45 + TSS region transcription start site region 19345
Lpcat4 2 112239841 to 112247111 7270 + protein coding gene lysophosphatidylcholine acyltransferase 4
Tssr19346 2 112242035 to 112242053 18 + TSS region transcription start site region 19346
Tssr19347 2 112242593 to 112242628 35 + TSS region transcription start site region 19347
Nutm1 2 112247948 to 112259291 11343 - protein coding gene NUT midline carcinoma, family member 1
Tssr25626 2 112259281 to 112259312 31 - TSS region transcription start site region 25626
Cpgi12043 2 112261885 to 112262176 291 CpG island CpG island 12043
Nop10 2 112261926 to 112262898 972 + protein coding gene NOP10 ribonucleoprotein
Tssr19348 2 112261945 to 112261951 6 + TSS region transcription start site region 19348
Tssr19349 2 112261957 to 112261974 17 + TSS region transcription start site region 19349
Tssr19350 2 112262328 to 112262337 9 + TSS region transcription start site region 19350
Cpgi12044 2 112265336 to 112266470 1134 CpG island CpG island 12044
Tssr19351 2 112265549 to 112265557 8 + TSS region transcription start site region 19351
Tssr19352 2 112265558 to 112265647 89 + TSS region transcription start site region 19352
Tssr19353 2 112265708 to 112265719 11 + TSS region transcription start site region 19353
Tssr19354 2 112265734 to 112265760 26 + TSS region transcription start site region 19354
Tssr19355 2 112265783 to 112265794 11 + TSS region transcription start site region 19355
Tssr596 2 112265804 to 112265807 3 + TSS region transcription start site region 596
Tssr19356 2 112265809 to 112265858 49 + TSS region transcription start site region 19356
Tssr19357 2 112265861 to 112265925 64 + TSS region transcription start site region 19357
Slc12a6 2 112266042 to 112363163 97121 + protein coding gene solute carrier family 12, member 6
Tssr19358 2 112266394 to 112266404 10 + TSS region transcription start site region 19358
Tssr19359 2 112266456 to 112266504 48 + TSS region transcription start site region 19359
Tssr19360 2 112266516 to 112266550 34 + TSS region transcription start site region 19360
Tssr19361 2 112266811 to 112266862 51 + TSS region transcription start site region 19361
Tssr25627 2 112268003 to 112268017 14 - TSS region transcription start site region 25627
E330013P08Rik 2 112268980 to 112272587 3607 unclassified non-coding RNA gene RIKEN cDNA E330013P08 gene
Tssr19362 2 112270817 to 112270821 4 + TSS region transcription start site region 19362
D2Dcr58 2 112273456 to 112273555 99 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 58
Tssr19363 2 112281624 to 112281628 4 + TSS region transcription start site region 19363
Tssr19364 2 112283191 to 112283195 4 + TSS region transcription start site region 19364
Tssr19365 2 112284561 to 112284610 49 + TSS region transcription start site region 19365
Mpaps1 2 112284851 to 97198212 -15086639 QTL microphthalmia anophthalmia susceptibility 1
Tssr19366 2 112284980 to 112284982 2 + TSS region transcription start site region 19366
Tssr19367 2 112305748 to 112305754 6 + TSS region transcription start site region 19367
Tssr19368 2 112305982 to 112306009 27 + TSS region transcription start site region 19368
Gm39908 2 112335859 to 112352444 16585 - lncRNA gene predicted gene, 39908
Gm10792 2 112358142 to 112362148 4006 unclassified gene predicted gene 10792
Tssr19369 2 112361688 to 112361713 25 + TSS region transcription start site region 19369
Tssr19370 2 112361744 to 112361752 8 + TSS region transcription start site region 19370
Emc4 2 112363019 to 112368027 5008 - protein coding gene ER membrane protein complex subunit 4
Tssr25628 2 112363327 to 112363333 6 - TSS region transcription start site region 25628
Cpgi12045 2 112367691 to 112368250 559 CpG island CpG island 12045
Tssr25629 2 112367958 to 112368017 59 - TSS region transcription start site region 25629
Tssr25630 2 112368021 to 112368036 15 - TSS region transcription start site region 25630
Tssr19371 2 112368046 to 112368078 32 + TSS region transcription start site region 19371
Tssr19372 2 112368083 to 112368110 27 + TSS region transcription start site region 19372
Gm21985 2 112376850 to 112379055 2205 + protein coding gene predicted gene 21985
Tssr19373 2 112376983 to 112377006 23 + TSS region transcription start site region 19373
Tssr19374 2 112377155 to 112377175 20 + TSS region transcription start site region 19374
Tssr19375 2 112377217 to 112377232 15 + TSS region transcription start site region 19375
Tssr19376 2 112377234 to 112377245 11 + TSS region transcription start site region 19376
Cpgi12046 2 112378969 to 112379717 748 CpG island CpG island 12046
Tssr19377 2 112379204 to 112379253 49 + TSS region transcription start site region 19377
Katnbl1 2 112379211 to 112414237 35026 + protein coding gene katanin p80 subunit B like 1
Tssr19378 2 112379266 to 112379284 18 + TSS region transcription start site region 19378
Tssr19379 2 112379308 to 112379322 14 + TSS region transcription start site region 19379
Tssr19380 2 112383848 to 112383852 4 + TSS region transcription start site region 19380
Gm13940 2 112389197 to 112389497 300 - pseudogene predicted gene 13940
D2Ertd127e 2 112394659 to 112394875 216 DNA segment DNA segment, Chr 2, ERATO Doi 127, expressed
Tssr19381 2 112446913 to 112446923 10 + TSS region transcription start site region 19381
Cpgi12047 2 112454676 to 112455506 830 CpG island CpG island 12047
Tssr25631 2 112454900 to 112454933 33 - TSS region transcription start site region 25631
Emc7 2 112455014 to 112469204 14190 + protein coding gene ER membrane protein complex subunit 7
Tssr19382 2 112455022 to 112455063 41 + TSS region transcription start site region 19382
n-R5s202 2 112469253 to 112469366 113 - rRNA gene nuclear encoded rRNA 5S 202
Chrm5 2 112479171 to 112480769 1598 - protein coding gene cholinergic receptor, muscarinic 5
Cpgi12048 2 112492531 to 112493596 1065 CpG island CpG island 12048
Aven 2 112492885 to 112631253 138368 + protein coding gene apoptosis, caspase activation inhibitor
Tssr19383 2 112492894 to 112492905 11 + TSS region transcription start site region 19383
Tssr19384 2 112492926 to 112493005 79 + TSS region transcription start site region 19384
Tssr25632 2 112493252 to 112493280 28 - TSS region transcription start site region 25632
Tssr19385 2 112498168 to 112498171 3 + TSS region transcription start site region 19385
Gm22676 2 112500869 to 112500997 128 + snoRNA gene predicted gene, 22676
Tssr19386 2 112506978 to 112506984 6 + TSS region transcription start site region 19386
Tssr19387 2 112507101 to 112507112 11 + TSS region transcription start site region 19387
Tssr19388 2 112507114 to 112507136 22 + TSS region transcription start site region 19388
Tssr19389 2 112507186 to 112507198 12 + TSS region transcription start site region 19389
Tssr25633 2 112510226 to 112510236 10 - TSS region transcription start site region 25633
Tssr25634 2 112561698 to 112561704 6 - TSS region transcription start site region 25634
Tssr19390 2 112571441 to 112571462 21 + TSS region transcription start site region 19390
Tssr597 2 112587413 to 112587415 2 + TSS region transcription start site region 597
Gm44374 2 112614030 to 112614169 139 + miRNA gene predicted gene, 44374
Tssr19391 2 112618386 to 112618406 20 + TSS region transcription start site region 19391
Tssr19392 2 112618411 to 112618436 25 + TSS region transcription start site region 19392
Tssr19393 2 112618442 to 112618447 5 + TSS region transcription start site region 19393
Tssr19394 2 112618994 to 112619001 7 + TSS region transcription start site region 19394
Tssr19395 2 112619012 to 112619022 10 + TSS region transcription start site region 19395
Ryr3 2 112631355 to 113217096 585741 - protein coding gene ryanodine receptor 3
Tssr25635 2 112678262 to 112678275 13 - TSS region transcription start site region 25635
Tssr19396 2 112712829 to 112712832 3 + TSS region transcription start site region 19396
D2Mit222 2 112728435 to 112728575 140 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 222
D2Mit352.1 2 112887950 to 112888125 175 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 352.1
D2Mit352 2 112888098 to 112888218 120 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 352
Tssr19397 2 112943516 to 112943519 3 + TSS region transcription start site region 19397
D2Dcr59 2 113050276 to 113050371 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 59
D2Mit481 2 113172764 to 113172875 111 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 481
Cpgi12049 2 113216439 to 113217658 1219 CpG island CpG island 12049
Tssr25636 2 113217026 to 113217039 13 - TSS region transcription start site region 25636
Tssr25637 2 113217052 to 113217094 42 - TSS region transcription start site region 25637
Tssr19398 2 113285717 to 113285719 2 + TSS region transcription start site region 19398
Tssr19399 2 113285731 to 113285749 18 + TSS region transcription start site region 19399
Tmco5b 2 113285732 to 113297190 11458 + protein coding gene transmembrane and coiled-coil domains 5B
Gm26505 2 113288273 to 113288438 165 + snRNA gene predicted gene, 26505
D2Mit390 2 113326334 to 113326443 109 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 390
Cpgi12050 2 113327286 to 113328008 722 CpG island CpG island 12050
Tssr19400 2 113327711 to 113327753 42 + TSS region transcription start site region 19400
Fmn1 2 113327736 to 113716767 389031 + protein coding gene formin 1
Tssr19401 2 113327756 to 113327781 25 + TSS region transcription start site region 19401
Tssr25638 2 113348010 to 113348022 12 - TSS region transcription start site region 25638
A930030B21Rik 2 113352587 to 113352911 324 unclassified gene RIKEN cDNA A930030B21 gene
Tssr19402 2 113364545 to 113364570 25 + TSS region transcription start site region 19402
Tssr19403 2 113365494 to 113365506 12 + TSS region transcription start site region 19403
Tssr19404 2 113365527 to 113365539 12 + TSS region transcription start site region 19404
Gm13967 2 113384681 to 113385199 518 + pseudogene predicted gene 13967
Gm13963 2 113387107 to 113441094 53987 - antisense lncRNA gene predicted gene 13963
Gm13965 2 113400459 to 113410250 9791 + unclassified non-coding RNA gene predicted gene 13965
Tssr19405 2 113405103 to 113405112 9 + TSS region transcription start site region 19405
Tssr19406 2 113405114 to 113405127 13 + TSS region transcription start site region 19406
Tssr19407 2 113405131 to 113405157 26 + TSS region transcription start site region 19407
Tssr19408 2 113405174 to 113405192 18 + TSS region transcription start site region 19408
Tssr19409 2 113405197 to 113405201 4 + TSS region transcription start site region 19409
Tssr19410 2 113405216 to 113405225 9 + TSS region transcription start site region 19410
Tssr19411 2 113439780 to 113439781 1 + TSS region transcription start site region 19411
Tssr19412 2 113440052 to 113440055 3 + TSS region transcription start site region 19412
Gm13966 2 113440681 to 113442304 1623 - antisense lncRNA gene predicted gene 13966
Tssr19413 2 113440853 to 113440891 38 + TSS region transcription start site region 19413
Tssr19414 2 113440896 to 113440952 56 + TSS region transcription start site region 19414
Tssr19415 2 113440978 to 113441000 22 + TSS region transcription start site region 19415
Tssr19416 2 113441042 to 113441058 16 + TSS region transcription start site region 19416
Tssr19417 2 113441068 to 113441079 11 + TSS region transcription start site region 19417
Tssr19418 2 113442334 to 113442350 16 + TSS region transcription start site region 19418
D2Mit483 2 113445055 to 113445178 123 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 483
D2Mit187 2 113465716 to 113465865 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 187
Gm44465 2 113476708 to 113476821 113 - miRNA gene predicted gene, 44465
Tssr19419 2 113478892 to 113478921 29 + TSS region transcription start site region 19419
Gm13964 2 113500679 to 113504034 3355 - antisense lncRNA gene predicted gene 13964
Tssr19420 2 113525391 to 113525409 18 + TSS region transcription start site region 19420
D2Mit392 2 113543464 to 113543607 143 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 392
5430416B10Rik 2 113572053 to 113573141 1088 unclassified gene RIKEN cDNA 5430416B10 gene
D2Mit188 2 113630544 to 113630727 183 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 188
Tssr19421 2 113640546 to 113640551 5 + TSS region transcription start site region 19421
Tssr19422 2 113640739 to 113640755 16 + TSS region transcription start site region 19422
Tssr25639 2 113641091 to 113641100 9 - TSS region transcription start site region 25639
Tssr19423 2 113641317 to 113641322 5 + TSS region transcription start site region 19423
D530043N20Rik 2 113650462 to 113650907 445 unclassified gene RIKEN cDNA D530043N20 gene
Tssr19424 2 113655458 to 113655486 28 + TSS region transcription start site region 19424
Tssr25640 2 113685002 to 113685035 33 - TSS region transcription start site region 25640
Tssr19425 2 113685083 to 113685096 13 + TSS region transcription start site region 19425
4930533B01Rik 2 113691053 to 113708550 17497 - antisense lncRNA gene RIKEN cDNA 4930533B01 gene
Tssr25641 2 113708547 to 113708552 5 - TSS region transcription start site region 25641
Tssr19426 2 113708670 to 113708673 3 + TSS region transcription start site region 19426
Tssr19427 2 113708678 to 113708702 24 + TSS region transcription start site region 19427
Grem1 2 113748674 to 113758785 10111 - protein coding gene gremlin 1, DAN family BMP antagonist
Tssr25642 2 113748873 to 113748920 47 - TSS region transcription start site region 25642
Tssr25643 2 113749055 to 113749062 7 - TSS region transcription start site region 25643
Tssr25644 2 113749098 to 113749104 6 - TSS region transcription start site region 25644
Cpgi12051 2 113757320 to 113759240 1920 CpG island CpG island 12051
Tssr25645 2 113758638 to 113758655 17 - TSS region transcription start site region 25645
Gm46756 2 113761146 to 113778244 17098 + lncRNA gene predicted gene, 46756
Scg5 2 113776362 to 113829121 52759 - protein coding gene secretogranin V
Tssr25646 2 113791918 to 113791931 13 - TSS region transcription start site region 25646
Tssr25647 2 113817974 to 113817978 4 - TSS region transcription start site region 25647
Tssr25648 2 113828744 to 113828774 30 - TSS region transcription start site region 25648
Cpgi12052 2 113828870 to 113829117 247 CpG island CpG island 12052
Tssr25649 2 113829015 to 113829068 53 - TSS region transcription start site region 25649
Tssr25650 2 113829069 to 113829110 41 - TSS region transcription start site region 25650
Tssr25651 2 113829588 to 113829604 16 - TSS region transcription start site region 25651
Tssr25652 2 113829612 to 113829639 27 - TSS region transcription start site region 25652
Tssr25653 2 113829642 to 113829676 34 - TSS region transcription start site region 25653
Tssr25654 2 113829677 to 113829685 8 - TSS region transcription start site region 25654
Arhgap11a 2 113831492 to 113848661 17169 - protein coding gene Rho GTPase activating protein 11A
Cpgi12053 2 113847899 to 113848831 932 CpG island CpG island 12053
Tssr25655 2 113848271 to 113848375 104 - TSS region transcription start site region 25655
Tssr25656 2 113848601 to 113848613 12 - TSS region transcription start site region 25656
Tssr25657 2 113848623 to 113848638 15 - TSS region transcription start site region 25657
Tssr25658 2 113848655 to 113848744 89 - TSS region transcription start site region 25658
D2Mit336 2 113862983 to 113863104 121 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 336
Gm30985 2 113893572 to 113894685 1113 - lncRNA gene predicted gene, 30985
Gm21596 2 113919758 to 113920558 800 - pseudogene predicted gene, 21596
Gm39909 2 113938034 to 113996812 58778 + lncRNA gene predicted gene, 39909
Tssr598 2 113996509 to 113996510 1 + TSS region transcription start site region 598
Gjd2 2 114009601 to 114013619 4018 - protein coding gene gap junction protein, delta 2
Cpgi12054 2 114012893 to 114014339 1446 CpG island CpG island 12054
A530058N18Rik 2 114013565 to 114032292 18727 + lncRNA gene RIKEN cDNA A530058N18 gene
Tssr25659 2 114013620 to 114013638 18 - TSS region transcription start site region 25659
Tssr599 2 114013692 to 114013727 35 + TSS region transcription start site region 599
Tssr19428 2 114036460 to 114036465 5 + TSS region transcription start site region 19428
Actc1 2 114047282 to 114052875 5593 - protein coding gene actin, alpha, cardiac muscle 1
Tssr19429 2 114047284 to 114047297 13 + TSS region transcription start site region 19429
Tssr25660 2 114047311 to 114047318 7 - TSS region transcription start site region 25660
Tssr25661 2 114047328 to 114047339 11 - TSS region transcription start site region 25661
Tssr19430 2 114047379 to 114047407 28 + TSS region transcription start site region 19430
Tssr25662 2 114047385 to 114047442 57 - TSS region transcription start site region 25662
Tssr25663 2 114047448 to 114047468 20 - TSS region transcription start site region 25663