Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:109719633-111119643

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bdnf 2 109674700 to 109727007 52307 + protein coding gene brain derived neurotrophic factor
Cpgi12037 2 109723467 to 109724020 553 CpG island CpG island 12037
Gm13932 2 109791928 to 109792534 606 - pseudogene predicted gene 13932
Gm39907 2 109857642 to 109890846 33204 - lncRNA gene predicted gene, 39907
Cpgi12038 2 109890552 to 109891380 828 CpG island CpG island 12038
Tssr19303 2 109890846 to 109890882 36 + TSS region transcription start site region 19303
Lin7c 2 109890878 to 109900937 10059 + protein coding gene lin-7 homolog C (C. elegans)
Tssr19304 2 109896307 to 109896318 11 + TSS region transcription start site region 19304
Tssr19305 2 109899299 to 109899303 4 + TSS region transcription start site region 19305
Tssr19306 2 109899968 to 109899972 4 + TSS region transcription start site region 19306
Platr8 2 109902396 to 109913319 10923 - lncRNA gene pluripotency associated transcript 8
Tssr25589 2 109913297 to 109913324 27 - TSS region transcription start site region 25589
Cpgi12039 2 109917468 to 109918861 1393 CpG island CpG island 12039
Tssr19307 2 109917571 to 109917592 21 + TSS region transcription start site region 19307
Tssr19308 2 109917596 to 109917638 42 + TSS region transcription start site region 19308
Tssr19309 2 109917639 to 109917656 17 + TSS region transcription start site region 19309
Lgr4 2 109917647 to 110014257 96610 + protein coding gene leucine-rich repeat-containing G protein-coupled receptor 4
Tssr19310 2 109917679 to 109917686 7 + TSS region transcription start site region 19310
Tssr19311 2 109917723 to 109917736 13 + TSS region transcription start site region 19311
D2Jcs2 2 109929176 to 109929387 211 DNA segment DNA segment, Chr 2, John C. Schimenti 2
Tssr19312 2 109929202 to 109929245 43 + TSS region transcription start site region 19312
D2Mit480 2 109948120 to 109948262 142 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 480
Smdq2 2 109948120 to 109948262 142 QTL segregation of mitochondrial DNA QTL 2
Tssr19313 2 110003566 to 110003571 5 + TSS region transcription start site region 19313
Tssr19314 2 110011721 to 110011728 7 + TSS region transcription start site region 19314
Tssr19315 2 110013162 to 110013174 12 + TSS region transcription start site region 19315
Tssr19316 2 110013497 to 110013500 3 + TSS region transcription start site region 19316
Cpgi12040 2 110017585 to 110018281 696 CpG island CpG island 12040
Tssr19317 2 110017806 to 110017873 67 + TSS region transcription start site region 19317
Ccdc34 2 110017817 to 110173360 155543 + protein coding gene coiled-coil domain containing 34
Tssr19318 2 110017879 to 110017890 11 + TSS region transcription start site region 19318
Tssr19319 2 110021910 to 110021942 32 + TSS region transcription start site region 19319
Tssr19320 2 110021947 to 110021961 14 + TSS region transcription start site region 19320
Tssr19321 2 110021968 to 110021992 24 + TSS region transcription start site region 19321
Ccdc34os 2 110031250 to 110050479 19229 - antisense lncRNA gene coiled-coil domain containing 34, opposite strand
Tssr25590 2 110032370 to 110032381 11 - TSS region transcription start site region 25590
Tssr25591 2 110032387 to 110032428 41 - TSS region transcription start site region 25591
Tssr25592 2 110050468 to 110050482 14 - TSS region transcription start site region 25592
Tssr591 2 110050490 to 110050494 4 - TSS region transcription start site region 591
Gm30258 2 110074028 to 110089445 15417 + lncRNA gene predicted gene, 30258
D2Dcr57 2 110081240 to 110081338 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 57
Tssr19322 2 110135056 to 110135060 4 + TSS region transcription start site region 19322
Gm13936 2 110196889 to 110256131 59242 + antisense lncRNA gene predicted gene 13936
Gm13937 2 110209178 to 110210165 987 - pseudogene predicted gene 13937
Tssr25593 2 110210266 to 110210267 1 - TSS region transcription start site region 25593
Gm22997 2 110218003 to 110218109 106 + snRNA gene predicted gene, 22997
Bbox1 2 110264056 to 110314816 50760 - protein coding gene butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)
Gm30319 2 110302319 to 110386879 84560 + lncRNA gene predicted gene, 30319
Tssr25594 2 110305582 to 110305592 10 - TSS region transcription start site region 25594
Tssr25595 2 110305603 to 110305614 11 - TSS region transcription start site region 25595
Tssr25596 2 110305619 to 110305643 24 - TSS region transcription start site region 25596
Tssr25597 2 110305655 to 110305670 15 - TSS region transcription start site region 25597
Tssr25598 2 110305677 to 110305721 44 - TSS region transcription start site region 25598
Tssr25599 2 110305730 to 110305755 25 - TSS region transcription start site region 25599
Tssr25600 2 110305770 to 110305781 11 - TSS region transcription start site region 25600
Tssr25601 2 110314215 to 110314227 12 - TSS region transcription start site region 25601
Tssr25602 2 110314234 to 110314246 12 - TSS region transcription start site region 25602
Tssr25603 2 110314266 to 110314292 26 - TSS region transcription start site region 25603
Tssr25604 2 110314525 to 110314571 46 - TSS region transcription start site region 25604
Fibin 2 110360925 to 110362993 2068 - protein coding gene fin bud initiation factor homolog (zebrafish)
Cpgi12041 2 110362613 to 110363122 509 CpG island CpG island 12041
Tssr25605 2 110362904 to 110362913 9 - TSS region transcription start site region 25605
Tssr25606 2 110362955 to 110362963 8 - TSS region transcription start site region 25606
Tssr25607 2 110362985 to 110363001 16 - TSS region transcription start site region 25607
Tssr25608 2 110363092 to 110363102 10 - TSS region transcription start site region 25608
Tssr25609 2 110363115 to 110363130 15 - TSS region transcription start site region 25609
Tssr25610 2 110363135 to 110363151 16 - TSS region transcription start site region 25610
Tssr25611 2 110363157 to 110363181 24 - TSS region transcription start site region 25611
Gm13935 2 110418170 to 110419619 1449 - pseudogene predicted gene 13935
Tssr592 2 110419633 to 110419643 10 - TSS region transcription start site region 592
Tssr593 2 110422100 to 110422112 12 + TSS region transcription start site region 593
Tssr25612 2 110452753 to 110452754 1 - TSS region transcription start site region 25612
Tssr19323 2 110557138 to 110557142 4 + TSS region transcription start site region 19323
Gm10794 2 110596429 to 110596637 208 - pseudogene predicted gene 10794
Slc5a12 2 110597298 to 110647779 50481 + protein coding gene solute carrier family 5 (sodium/glucose cotransporter), member 12
Tssr19324 2 110597298 to 110597316 18 + TSS region transcription start site region 19324
Tssr19325 2 110597321 to 110597353 32 + TSS region transcription start site region 19325
Tssr594 2 110600464 to 110600470 6 + TSS region transcription start site region 594
Tssr19326 2 110600505 to 110600517 12 + TSS region transcription start site region 19326
Tssr19327 2 110600537 to 110600548 11 + TSS region transcription start site region 19327
Tssr19328 2 110600700 to 110600717 17 + TSS region transcription start site region 19328
Tssr19329 2 110600787 to 110600798 11 + TSS region transcription start site region 19329
Tssr19330 2 110601344 to 110601352 8 + TSS region transcription start site region 19330
Tssr19331 2 110654921 to 110654928 7 + TSS region transcription start site region 19331
Ano3 2 110655201 to 110950404 295203 - protein coding gene anoctamin 3
D730004N08Rik 2 110710340 to 110711128 788 unclassified gene RIKEN cDNA D730004N08 gene
Tssr19332 2 110721473 to 110721490 17 + TSS region transcription start site region 19332
Muc15 2 110721494 to 110739537 18043 + protein coding gene mucin 15
Tssr19333 2 110721503 to 110721514 11 + TSS region transcription start site region 19333
Tssr595 2 110721559 to 110721581 22 + TSS region transcription start site region 595
Tssr19334 2 110721587 to 110721619 32 + TSS region transcription start site region 19334
Tssr19335 2 110721632 to 110721646 14 + TSS region transcription start site region 19335
Tssr19336 2 110731550 to 110731561 11 + TSS region transcription start site region 19336
Tssr19337 2 110731592 to 110731601 9 + TSS region transcription start site region 19337
Tssr19338 2 110731716 to 110731724 8 + TSS region transcription start site region 19338
Tssr25613 2 110791229 to 110791232 3 - TSS region transcription start site region 25613
Tssr25614 2 110840021 to 110840040 19 - TSS region transcription start site region 25614
Tssr25615 2 110840055 to 110840062 7 - TSS region transcription start site region 25615
Tssr25616 2 110840116 to 110840154 38 - TSS region transcription start site region 25616
Tssr25617 2 110950159 to 110950169 10 - TSS region transcription start site region 25617
Tssr25618 2 110950193 to 110950206 13 - TSS region transcription start site region 25618
Tssr25619 2 110950222 to 110950303 81 - TSS region transcription start site region 25619
Tssr25620 2 110950342 to 110950353 11 - TSS region transcription start site region 25620
Gm13942 2 111051320 to 111057574 6254 - lincRNA gene predicted gene 13942
Cplaq15 2 111085773 to 154512747 43426974 QTL circadian period of locomotor activity 15
D2Mit482 2 111085773 to 111085892 119 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 482
Gm13941 2 111088372 to 111105982 17610 - protein coding gene predicted gene 13941