Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:109715057-113575995

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323 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bdnf 2 109674700 to 109727007 52307 + protein coding gene brain derived neurotrophic factor
Cpgi12037 2 109723467 to 109724020 553 CpG island CpG island 12037
Gm13932 2 109791928 to 109792534 606 - pseudogene predicted gene 13932
Gm39907 2 109857642 to 109890846 33204 - lncRNA gene predicted gene, 39907
Cpgi12038 2 109890552 to 109891380 828 CpG island CpG island 12038
Tssr19303 2 109890846 to 109890882 36 + TSS region transcription start site region 19303
Lin7c 2 109890878 to 109900937 10059 + protein coding gene lin-7 homolog C (C. elegans)
Tssr19304 2 109896307 to 109896318 11 + TSS region transcription start site region 19304
Tssr19305 2 109899299 to 109899303 4 + TSS region transcription start site region 19305
Tssr19306 2 109899968 to 109899972 4 + TSS region transcription start site region 19306
Platr8 2 109902396 to 109913319 10923 - lncRNA gene pluripotency associated transcript 8
Tssr25589 2 109913297 to 109913324 27 - TSS region transcription start site region 25589
Cpgi12039 2 109917468 to 109918861 1393 CpG island CpG island 12039
Tssr19307 2 109917571 to 109917592 21 + TSS region transcription start site region 19307
Tssr19308 2 109917596 to 109917638 42 + TSS region transcription start site region 19308
Tssr19309 2 109917639 to 109917656 17 + TSS region transcription start site region 19309
Lgr4 2 109917647 to 110014257 96610 + protein coding gene leucine-rich repeat-containing G protein-coupled receptor 4
Tssr19310 2 109917679 to 109917686 7 + TSS region transcription start site region 19310
Tssr19311 2 109917723 to 109917736 13 + TSS region transcription start site region 19311
D2Jcs2 2 109929176 to 109929387 211 DNA segment DNA segment, Chr 2, John C. Schimenti 2
Tssr19312 2 109929202 to 109929245 43 + TSS region transcription start site region 19312
D2Mit480 2 109948120 to 109948262 142 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 480
Smdq2 2 109948120 to 109948262 142 QTL segregation of mitochondrial DNA QTL 2
Tssr19313 2 110003566 to 110003571 5 + TSS region transcription start site region 19313
Tssr19314 2 110011721 to 110011728 7 + TSS region transcription start site region 19314
Tssr19315 2 110013162 to 110013174 12 + TSS region transcription start site region 19315
Tssr19316 2 110013497 to 110013500 3 + TSS region transcription start site region 19316
Cpgi12040 2 110017585 to 110018281 696 CpG island CpG island 12040
Tssr19317 2 110017806 to 110017873 67 + TSS region transcription start site region 19317
Ccdc34 2 110017817 to 110173360 155543 + protein coding gene coiled-coil domain containing 34
Tssr19318 2 110017879 to 110017890 11 + TSS region transcription start site region 19318
Tssr19319 2 110021910 to 110021942 32 + TSS region transcription start site region 19319
Tssr19320 2 110021947 to 110021961 14 + TSS region transcription start site region 19320
Tssr19321 2 110021968 to 110021992 24 + TSS region transcription start site region 19321
Ccdc34os 2 110031250 to 110050479 19229 - antisense lncRNA gene coiled-coil domain containing 34, opposite strand
Tssr25590 2 110032370 to 110032381 11 - TSS region transcription start site region 25590
Tssr25591 2 110032387 to 110032428 41 - TSS region transcription start site region 25591
Tssr25592 2 110050468 to 110050482 14 - TSS region transcription start site region 25592
Tssr591 2 110050490 to 110050494 4 - TSS region transcription start site region 591
Gm30258 2 110074028 to 110089445 15417 + lncRNA gene predicted gene, 30258
D2Dcr57 2 110081240 to 110081338 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 57
Tssr19322 2 110135056 to 110135060 4 + TSS region transcription start site region 19322
Gm13936 2 110196889 to 110256131 59242 + antisense lncRNA gene predicted gene 13936
Gm13937 2 110209178 to 110210165 987 - pseudogene predicted gene 13937
Tssr25593 2 110210266 to 110210267 1 - TSS region transcription start site region 25593
Gm22997 2 110218003 to 110218109 106 + snRNA gene predicted gene, 22997
Bbox1 2 110264056 to 110314816 50760 - protein coding gene butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)
Gm30319 2 110302319 to 110386879 84560 + lncRNA gene predicted gene, 30319
Tssr25594 2 110305582 to 110305592 10 - TSS region transcription start site region 25594
Tssr25595 2 110305603 to 110305614 11 - TSS region transcription start site region 25595
Tssr25596 2 110305619 to 110305643 24 - TSS region transcription start site region 25596
Tssr25597 2 110305655 to 110305670 15 - TSS region transcription start site region 25597
Tssr25598 2 110305677 to 110305721 44 - TSS region transcription start site region 25598
Tssr25599 2 110305730 to 110305755 25 - TSS region transcription start site region 25599
Tssr25600 2 110305770 to 110305781 11 - TSS region transcription start site region 25600
Tssr25601 2 110314215 to 110314227 12 - TSS region transcription start site region 25601
Tssr25602 2 110314234 to 110314246 12 - TSS region transcription start site region 25602
Tssr25603 2 110314266 to 110314292 26 - TSS region transcription start site region 25603
Tssr25604 2 110314525 to 110314571 46 - TSS region transcription start site region 25604
Fibin 2 110360925 to 110362993 2068 - protein coding gene fin bud initiation factor homolog (zebrafish)
Cpgi12041 2 110362613 to 110363122 509 CpG island CpG island 12041
Tssr25605 2 110362904 to 110362913 9 - TSS region transcription start site region 25605
Tssr25606 2 110362955 to 110362963 8 - TSS region transcription start site region 25606
Tssr25607 2 110362985 to 110363001 16 - TSS region transcription start site region 25607
Tssr25608 2 110363092 to 110363102 10 - TSS region transcription start site region 25608
Tssr25609 2 110363115 to 110363130 15 - TSS region transcription start site region 25609
Tssr25610 2 110363135 to 110363151 16 - TSS region transcription start site region 25610
Tssr25611 2 110363157 to 110363181 24 - TSS region transcription start site region 25611
Gm13935 2 110418170 to 110419619 1449 - pseudogene predicted gene 13935
Tssr592 2 110419633 to 110419643 10 - TSS region transcription start site region 592
Tssr593 2 110422100 to 110422112 12 + TSS region transcription start site region 593
Tssr25612 2 110452753 to 110452754 1 - TSS region transcription start site region 25612
Tssr19323 2 110557138 to 110557142 4 + TSS region transcription start site region 19323
Gm10794 2 110596429 to 110596637 208 - pseudogene predicted gene 10794
Slc5a12 2 110597298 to 110647779 50481 + protein coding gene solute carrier family 5 (sodium/glucose cotransporter), member 12
Tssr19324 2 110597298 to 110597316 18 + TSS region transcription start site region 19324
Tssr19325 2 110597321 to 110597353 32 + TSS region transcription start site region 19325
Tssr594 2 110600464 to 110600470 6 + TSS region transcription start site region 594
Tssr19326 2 110600505 to 110600517 12 + TSS region transcription start site region 19326
Tssr19327 2 110600537 to 110600548 11 + TSS region transcription start site region 19327
Tssr19328 2 110600700 to 110600717 17 + TSS region transcription start site region 19328
Tssr19329 2 110600787 to 110600798 11 + TSS region transcription start site region 19329
Tssr19330 2 110601344 to 110601352 8 + TSS region transcription start site region 19330
Tssr19331 2 110654921 to 110654928 7 + TSS region transcription start site region 19331
Ano3 2 110655201 to 110950404 295203 - protein coding gene anoctamin 3
D730004N08Rik 2 110710340 to 110711128 788 unclassified gene RIKEN cDNA D730004N08 gene
Tssr19332 2 110721473 to 110721490 17 + TSS region transcription start site region 19332
Muc15 2 110721494 to 110739537 18043 + protein coding gene mucin 15
Tssr19333 2 110721503 to 110721514 11 + TSS region transcription start site region 19333
Tssr595 2 110721559 to 110721581 22 + TSS region transcription start site region 595
Tssr19334 2 110721587 to 110721619 32 + TSS region transcription start site region 19334
Tssr19335 2 110721632 to 110721646 14 + TSS region transcription start site region 19335
Tssr19336 2 110731550 to 110731561 11 + TSS region transcription start site region 19336
Tssr19337 2 110731592 to 110731601 9 + TSS region transcription start site region 19337
Tssr19338 2 110731716 to 110731724 8 + TSS region transcription start site region 19338
Tssr25613 2 110791229 to 110791232 3 - TSS region transcription start site region 25613
Tssr25614 2 110840021 to 110840040 19 - TSS region transcription start site region 25614
Tssr25615 2 110840055 to 110840062 7 - TSS region transcription start site region 25615
Tssr25616 2 110840116 to 110840154 38 - TSS region transcription start site region 25616
Tssr25617 2 110950159 to 110950169 10 - TSS region transcription start site region 25617
Tssr25618 2 110950193 to 110950206 13 - TSS region transcription start site region 25618
Tssr25619 2 110950222 to 110950303 81 - TSS region transcription start site region 25619
Tssr25620 2 110950342 to 110950353 11 - TSS region transcription start site region 25620
Gm13942 2 111051320 to 111057574 6254 - lincRNA gene predicted gene 13942
D2Mit482 2 111085773 to 111085892 119 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 482
Cplaq15 2 111085773 to 154512747 43426974 QTL circadian period of locomotor activity 15
Gm13941 2 111088372 to 111105982 17610 - protein coding gene predicted gene 13941
Gm15130 2 111134114 to 111152936 18822 - protein coding gene predicted gene 15130
Tssr25621 2 111139659 to 111139664 5 - TSS region transcription start site region 25621
Gm13961 2 111182635 to 111187403 4768 + pseudogene predicted gene 13961
4930430A15Rik 2 111187992 to 111229602 41610 - protein coding gene RIKEN cDNA 4930430A15 gene
Tssr25622 2 111229531 to 111229542 11 - TSS region transcription start site region 25622
Tssr25623 2 111229558 to 111229612 54 - TSS region transcription start site region 25623
Olfr1275 2 111230853 to 111233393 2540 - protein coding gene olfactory receptor 1275
Gm13962 2 111246131 to 111256163 10032 - antisense lncRNA gene predicted gene 13962
Olfr1276 2 111257117 to 111258055 938 + protein coding gene olfactory receptor 1276
Olfr1277 2 111269454 to 111270365 911 - protein coding gene olfactory receptor 1277
Olfr1278 2 111292270 to 111293211 941 + protein coding gene olfactory receptor 1278
D2Mit163a 2 111300935 to 111300998 63 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 163a
D2Mit163b 2 111300935 to 111301061 126 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 163b
Olfr1279 2 111306201 to 111307142 941 + protein coding gene olfactory receptor 1279
Olfr1280 2 111314017 to 111326003 11986 + protein coding gene olfactory receptor 1280
Olfr1281 2 111328421 to 111329338 917 + protein coding gene olfactory receptor 1281
Olfr1282 2 111335159 to 111336076 917 - protein coding gene olfactory receptor 1282
Olfr1283 2 111368634 to 111369551 917 + protein coding gene olfactory receptor 1283
Olfr1284 2 111379002 to 111379937 935 + protein coding gene olfactory receptor 1284
Olfr1285 2 111408457 to 111409298 841 + protein coding gene olfactory receptor 1285
Olfr1286 2 111420032 to 111420949 917 - protein coding gene olfactory receptor 1286
Olfr1287 2 111449142 to 111450059 917 + protein coding gene olfactory receptor 1287
Olfr1547-ps1 2 111469439 to 111469858 419 + pseudogene olfactory receptor 1547, pseudogene 1
Olfr1288 2 111478786 to 111479724 938 + protein coding gene olfactory receptor 1288
Olfr1289 2 111483432 to 111484328 896 + protein coding gene olfactory receptor 1289
Olfr1290 2 111489218 to 111493815 4597 - protein coding gene olfactory receptor 1290
Olfr1291-ps1 2 111499296 to 111500234 938 + pseudogene olfactory receptor 1291, pseudogene 1
Olfr1292-ps1 2 111508573 to 111509511 938 - pseudogene olfactory receptor 1292, pseudogene 1
Olfr1293-ps 2 111527304 to 111528242 938 + polymorphic pseudogene olfactory receptor 1293, pseudogene
Gm44713 2 111528414 to 111528538 124 + pseudogene predicted gene 44713
Olfr1294 2 111537349 to 111540150 2801 - protein coding gene olfactory receptor 1294
Olfr1295 2 111564504 to 111569591 5087 - protein coding gene olfactory receptor 1295
Olfr1296-ps1 2 111593073 to 111594011 938 - pseudogene olfactory receptor 1296, pseudogene 1
Olfr1297 2 111621134 to 111626391 5257 - protein coding gene olfactory receptor 1297
Olfr1298 2 111645057 to 111645995 938 - protein coding gene olfactory receptor 1298
Olfr1299 2 111661453 to 111665166 3713 + protein coding gene olfactory receptor 1299
Gm44840 2 111661456 to 111705461 44005 + unclassified non-coding RNA gene predicted gene 44840
Olfr1300-ps1 2 111667437 to 111693319 25882 + polymorphic pseudogene olfactory receptor 1300, pseudogene 1
Gm13922 2 111698723 to 111698878 155 - pseudogene predicted gene 13922
Gm13930 2 111740105 to 111740834 729 + pseudogene predicted gene 13930
Olfr1301 2 111754251 to 111755189 938 + protein coding gene olfactory receptor 1301
Olfr1302 2 111780313 to 111781260 947 + protein coding gene olfactory receptor 1302
Olfr1303 2 111813786 to 111814724 938 - protein coding gene olfactory receptor 1303
Olfr1304-ps1 2 111823228 to 111823416 188 - pseudogene olfactory receptor 1304, pseudogene 1
Gm26421 2 111825179 to 111825310 131 + snoRNA gene predicted gene, 26421
Olfr268-ps1 2 111844262 to 111851838 7576 - pseudogene olfactory receptor 268, pseudogene 1
Olfr1305 2 111872915 to 111873853 938 - protein coding gene olfactory receptor 1305
Olfr1306 2 111911990 to 111912928 938 - protein coding gene olfactory receptor 1306
Gm13928 2 111926456 to 111927963 1507 + pseudogene predicted gene 13928
Olfr1307 2 111944516 to 111945454 938 - protein coding gene olfactory receptor 1307
Olfr1308 2 111960109 to 111961071 962 - protein coding gene olfactory receptor 1308
Olfr1309 2 111983134 to 111984096 962 - protein coding gene olfactory receptor 1309
Tssr19339 2 112000101 to 112000105 4 + TSS region transcription start site region 19339
Gm13929 2 112000178 to 112001301 1123 + pseudogene predicted gene 13929
Tssr19340 2 112000328 to 112000343 15 + TSS region transcription start site region 19340
Olfr1310 2 112008246 to 112009184 938 - protein coding gene olfactory receptor 1310
Olfr1311 2 112020914 to 112021852 938 - protein coding gene olfactory receptor 1311
Olfr1312 2 112042077 to 112043030 953 - protein coding gene olfactory receptor 1312
Olfr1313 2 112071646 to 112072581 935 - protein coding gene olfactory receptor 1313
Olfr1314 2 112091761 to 112092699 938 - protein coding gene olfactory receptor 1314
Olfr1315-ps1 2 112110312 to 112110815 503 - pseudogene olfactory receptor 1315, pseudogene 1
Olfr1316 2 112129871 to 112130815 944 - protein coding gene olfactory receptor 1316
Olfr1317 2 112141947 to 112142897 950 + protein coding gene olfactory receptor 1317
Olfr1318 2 112155898 to 112157007 1109 + protein coding gene olfactory receptor 1318
Olfr1319-ps1 2 112167725 to 112167982 257 + pseudogene olfactory receptor 1319, pseudogene 1
D2Mit207 2 112194642 to 112194776 134 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 207
Actre4 2 112194642 to 128331901 16137259 QTL activity response to ethanol 4
Actre3 2 112194642 to 128331901 16137259 QTL activity response to ethanol 3
Tssr25624 2 112203040 to 112203071 31 - TSS region transcription start site region 25624
Tssr25625 2 112203365 to 112203373 8 - TSS region transcription start site region 25625
Gm4284 2 112210223 to 112210820 597 - pseudogene predicted gene 4284
Cpgi12042 2 112239072 to 112240727 1655 CpG island CpG island 12042
Tssr19341 2 112239364 to 112239409 45 + TSS region transcription start site region 19341
Tssr19342 2 112239474 to 112239508 34 + TSS region transcription start site region 19342
Tssr19343 2 112239755 to 112239764 9 + TSS region transcription start site region 19343
Tssr19344 2 112239784 to 112239795 11 + TSS region transcription start site region 19344
Tssr19345 2 112239815 to 112239860 45 + TSS region transcription start site region 19345
Lpcat4 2 112239841 to 112247111 7270 + protein coding gene lysophosphatidylcholine acyltransferase 4
Tssr19346 2 112242035 to 112242053 18 + TSS region transcription start site region 19346
Tssr19347 2 112242593 to 112242628 35 + TSS region transcription start site region 19347
Nutm1 2 112247948 to 112259291 11343 - protein coding gene NUT midline carcinoma, family member 1
Tssr25626 2 112259281 to 112259312 31 - TSS region transcription start site region 25626
Cpgi12043 2 112261885 to 112262176 291 CpG island CpG island 12043
Nop10 2 112261926 to 112262898 972 + protein coding gene NOP10 ribonucleoprotein
Tssr19348 2 112261945 to 112261951 6 + TSS region transcription start site region 19348
Tssr19349 2 112261957 to 112261974 17 + TSS region transcription start site region 19349
Tssr19350 2 112262328 to 112262337 9 + TSS region transcription start site region 19350
Cpgi12044 2 112265336 to 112266470 1134 CpG island CpG island 12044
Tssr19351 2 112265549 to 112265557 8 + TSS region transcription start site region 19351
Tssr19352 2 112265558 to 112265647 89 + TSS region transcription start site region 19352
Tssr19353 2 112265708 to 112265719 11 + TSS region transcription start site region 19353
Tssr19354 2 112265734 to 112265760 26 + TSS region transcription start site region 19354
Tssr19355 2 112265783 to 112265794 11 + TSS region transcription start site region 19355