Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:109681240-110481338

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bdnf 2 109674700 to 109727007 52307 + protein coding gene brain derived neurotrophic factor
Cpgi12035 2 109692323 to 109692582 259 CpG island CpG island 12035
Tssr19301 2 109692524 to 109692544 20 + TSS region transcription start site region 19301
Cpgi12036 2 109693234 to 109694409 1175 CpG island CpG island 12036
Tssr19302 2 109693601 to 109693624 23 + TSS region transcription start site region 19302
Cpgi12037 2 109723467 to 109724020 553 CpG island CpG island 12037
Gm13932 2 109791928 to 109792534 606 - pseudogene predicted gene 13932
Gm39907 2 109857642 to 109890846 33204 - lncRNA gene predicted gene, 39907
Cpgi12038 2 109890552 to 109891380 828 CpG island CpG island 12038
Tssr19303 2 109890846 to 109890882 36 + TSS region transcription start site region 19303
Lin7c 2 109890878 to 109900937 10059 + protein coding gene lin-7 homolog C (C. elegans)
Tssr19304 2 109896307 to 109896318 11 + TSS region transcription start site region 19304
Tssr19305 2 109899299 to 109899303 4 + TSS region transcription start site region 19305
Tssr19306 2 109899968 to 109899972 4 + TSS region transcription start site region 19306
Platr8 2 109902396 to 109913319 10923 - lncRNA gene pluripotency associated transcript 8
Tssr25589 2 109913297 to 109913324 27 - TSS region transcription start site region 25589
Cpgi12039 2 109917468 to 109918861 1393 CpG island CpG island 12039
Tssr19307 2 109917571 to 109917592 21 + TSS region transcription start site region 19307
Tssr19308 2 109917596 to 109917638 42 + TSS region transcription start site region 19308
Tssr19309 2 109917639 to 109917656 17 + TSS region transcription start site region 19309
Lgr4 2 109917647 to 110014257 96610 + protein coding gene leucine-rich repeat-containing G protein-coupled receptor 4
Tssr19310 2 109917679 to 109917686 7 + TSS region transcription start site region 19310
Tssr19311 2 109917723 to 109917736 13 + TSS region transcription start site region 19311
D2Jcs2 2 109929176 to 109929387 211 DNA segment DNA segment, Chr 2, John C. Schimenti 2
Tssr19312 2 109929202 to 109929245 43 + TSS region transcription start site region 19312
Smdq2 2 109948120 to 109948262 142 QTL segregation of mitochondrial DNA QTL 2
D2Mit480 2 109948120 to 109948262 142 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 480
Tssr19313 2 110003566 to 110003571 5 + TSS region transcription start site region 19313
Tssr19314 2 110011721 to 110011728 7 + TSS region transcription start site region 19314
Tssr19315 2 110013162 to 110013174 12 + TSS region transcription start site region 19315
Tssr19316 2 110013497 to 110013500 3 + TSS region transcription start site region 19316
Cpgi12040 2 110017585 to 110018281 696 CpG island CpG island 12040
Tssr19317 2 110017806 to 110017873 67 + TSS region transcription start site region 19317
Ccdc34 2 110017817 to 110173360 155543 + protein coding gene coiled-coil domain containing 34
Tssr19318 2 110017879 to 110017890 11 + TSS region transcription start site region 19318
Tssr19319 2 110021910 to 110021942 32 + TSS region transcription start site region 19319
Tssr19320 2 110021947 to 110021961 14 + TSS region transcription start site region 19320
Tssr19321 2 110021968 to 110021992 24 + TSS region transcription start site region 19321
Ccdc34os 2 110031250 to 110050479 19229 - antisense lncRNA gene coiled-coil domain containing 34, opposite strand
Tssr25590 2 110032370 to 110032381 11 - TSS region transcription start site region 25590
Tssr25591 2 110032387 to 110032428 41 - TSS region transcription start site region 25591
Tssr25592 2 110050468 to 110050482 14 - TSS region transcription start site region 25592
Tssr591 2 110050490 to 110050494 4 - TSS region transcription start site region 591
Gm30258 2 110074028 to 110089445 15417 + lncRNA gene predicted gene, 30258
D2Dcr57 2 110081240 to 110081338 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 57
Tssr19322 2 110135056 to 110135060 4 + TSS region transcription start site region 19322
Gm13936 2 110196889 to 110256131 59242 + antisense lncRNA gene predicted gene 13936
Gm13937 2 110209178 to 110210165 987 - pseudogene predicted gene 13937
Tssr25593 2 110210266 to 110210267 1 - TSS region transcription start site region 25593
Gm22997 2 110218003 to 110218109 106 + snRNA gene predicted gene, 22997
Bbox1 2 110264056 to 110314816 50760 - protein coding gene butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)
Gm30319 2 110302319 to 110386879 84560 + lncRNA gene predicted gene, 30319
Tssr25594 2 110305582 to 110305592 10 - TSS region transcription start site region 25594
Tssr25595 2 110305603 to 110305614 11 - TSS region transcription start site region 25595
Tssr25596 2 110305619 to 110305643 24 - TSS region transcription start site region 25596
Tssr25597 2 110305655 to 110305670 15 - TSS region transcription start site region 25597
Tssr25598 2 110305677 to 110305721 44 - TSS region transcription start site region 25598
Tssr25599 2 110305730 to 110305755 25 - TSS region transcription start site region 25599
Tssr25600 2 110305770 to 110305781 11 - TSS region transcription start site region 25600
Tssr25601 2 110314215 to 110314227 12 - TSS region transcription start site region 25601
Tssr25602 2 110314234 to 110314246 12 - TSS region transcription start site region 25602
Tssr25603 2 110314266 to 110314292 26 - TSS region transcription start site region 25603
Tssr25604 2 110314525 to 110314571 46 - TSS region transcription start site region 25604
Fibin 2 110360925 to 110362993 2068 - protein coding gene fin bud initiation factor homolog (zebrafish)
Cpgi12041 2 110362613 to 110363122 509 CpG island CpG island 12041
Tssr25605 2 110362904 to 110362913 9 - TSS region transcription start site region 25605
Tssr25606 2 110362955 to 110362963 8 - TSS region transcription start site region 25606
Tssr25607 2 110362985 to 110363001 16 - TSS region transcription start site region 25607
Tssr25608 2 110363092 to 110363102 10 - TSS region transcription start site region 25608
Tssr25609 2 110363115 to 110363130 15 - TSS region transcription start site region 25609
Tssr25610 2 110363135 to 110363151 16 - TSS region transcription start site region 25610
Tssr25611 2 110363157 to 110363181 24 - TSS region transcription start site region 25611
Gm13935 2 110418170 to 110419619 1449 - pseudogene predicted gene 13935
Tssr592 2 110419633 to 110419643 10 - TSS region transcription start site region 592
Tssr593 2 110422100 to 110422112 12 + TSS region transcription start site region 593
Tssr25612 2 110452753 to 110452754 1 - TSS region transcription start site region 25612