Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:10958449-11478462

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm13263 2 10959127 to 10959964 837 - pseudogene predicted gene 13263
D2Mit201 2 11001232 to 11001378 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 201
Gm37343 2 11013808 to 11013918 110 - unclassified gene predicted gene, 37343
Gm23877 2 11014762 to 11014890 128 - snoRNA gene predicted gene, 23877
Gm13264 2 11036874 to 11060129 23255 + lincRNA gene predicted gene 13264
Gm26478 2 11087781 to 11087913 132 - snRNA gene predicted gene, 26478
Gm13297 2 11090844 to 11091763 919 + pseudogene predicted gene 13297
Gm13294 2 11098933 to 11100262 1329 - pseudogene predicted gene 13294
Cpgi11197 2 11099216 to 11099494 278 CpG island CpG island 11197
Tssr22602 2 11159773 to 11159779 6 - TSS region transcription start site region 22602
Tssr22603 2 11160791 to 11160807 16 - TSS region transcription start site region 22603
Tssr22604 2 11170067 to 11170087 20 - TSS region transcription start site region 22604
Tssr16098 2 11171881 to 11171915 34 + TSS region transcription start site region 16098
Cpgi11198 2 11172012 to 11172667 655 CpG island CpG island 11198
Tssr16099 2 11172033 to 11172053 20 + TSS region transcription start site region 16099
Tssr16100 2 11172054 to 11172072 18 + TSS region transcription start site region 16100
Tssr16101 2 11172080 to 11172140 60 + TSS region transcription start site region 16101
Prkcq 2 11172108 to 11301222 129114 + protein coding gene protein kinase C, theta
Tssr402 2 11172140 to 11172145 5 + TSS region transcription start site region 402
Tssr16102 2 11172161 to 11172172 11 + TSS region transcription start site region 16102
Tssr16103 2 11172182 to 11172199 17 + TSS region transcription start site region 16103
Tssr16104 2 11172216 to 11172237 21 + TSS region transcription start site region 16104
Tssr16105 2 11172288 to 11172302 14 + TSS region transcription start site region 16105
Tssr16106 2 11172309 to 11172327 18 + TSS region transcription start site region 16106
Tssr16107 2 11172329 to 11172350 21 + TSS region transcription start site region 16107
Tssr16108 2 11172356 to 11172367 11 + TSS region transcription start site region 16108
Tssr403 2 11172382 to 11172385 3 + TSS region transcription start site region 403
Tssr16109 2 11172388 to 11172419 31 + TSS region transcription start site region 16109
Tssr16110 2 11175863 to 11175873 10 + TSS region transcription start site region 16110
Gm36932 2 11181012 to 11181940 928 + unclassified gene predicted gene, 36932
Gm37520 2 11190641 to 11193312 2671 - unclassified gene predicted gene, 37520
Tssr16111 2 11206025 to 11206035 10 + TSS region transcription start site region 16111
Tssr16112 2 11206109 to 11206112 3 + TSS region transcription start site region 16112
Tssr22605 2 11212008 to 11212025 17 - TSS region transcription start site region 22605
Tssr16113 2 11218449 to 11218462 13 + TSS region transcription start site region 16113
Tssr16114 2 11218493 to 11218504 11 + TSS region transcription start site region 16114
Gm37766 2 11227297 to 11229863 2566 + unclassified gene predicted gene, 37766
Tssr16115 2 11250442 to 11250449 7 + TSS region transcription start site region 16115
Tssr16116 2 11250462 to 11250474 12 + TSS region transcription start site region 16116
Tssr16117 2 11250475 to 11250485 10 + TSS region transcription start site region 16117
Tssr16118 2 11250487 to 11250498 11 + TSS region transcription start site region 16118
Tssr22606 2 11259515 to 11259521 6 - TSS region transcription start site region 22606
Cpgi11199 2 11290137 to 11290698 561 CpG island CpG island 11199
Gm38171 2 11315372 to 11319874 4502 - lincRNA gene predicted gene, 38171
Gm31902 2 11319591 to 11334161 14570 - lncRNA gene predicted gene, 31902
Tssr22607 2 11332551 to 11332567 16 - TSS region transcription start site region 22607
Tssr22608 2 11332571 to 11332587 16 - TSS region transcription start site region 22608
Tssr404 2 11332593 to 11332616 23 - TSS region transcription start site region 404
Tssr405 2 11332788 to 11332802 14 + TSS region transcription start site region 405
Tssr406 2 11332811 to 11332829 18 + TSS region transcription start site region 406
Gm37851 2 11332825 to 11333713 888 + unclassified gene predicted gene, 37851
Tssr22609 2 11333375 to 11333398 23 - TSS region transcription start site region 22609
8030442B05Rik 2 11338366 to 11398500 60134 - lincRNA gene RIKEN cDNA 8030442B05 gene
Tssr16119 2 11339325 to 11339341 16 + TSS region transcription start site region 16119
Tssr16120 2 11339461 to 11339501 40 + TSS region transcription start site region 16120
Gm13293 2 11339489 to 11344106 4617 + lincRNA gene predicted gene 13293
Tssr16121 2 11339505 to 11339526 21 + TSS region transcription start site region 16121
Tssr16122 2 11339541 to 11339546 5 + TSS region transcription start site region 16122
Tssr16123 2 11339731 to 11339750 19 + TSS region transcription start site region 16123
Gm37730 2 11365241 to 11367451 2210 - unclassified gene predicted gene, 37730
Tssr22610 2 11375039 to 11375082 43 - TSS region transcription start site region 22610
4933403L11Rik 2 11383787 to 11384907 1120 - unclassified gene RIKEN cDNA 4933403L11 gene
Gm13291 2 11385003 to 11387064 2061 + lincRNA gene predicted gene 13291
Tssr22611 2 11398495 to 11398517 22 - TSS region transcription start site region 22611
Tssr22612 2 11398525 to 11398538 13 - TSS region transcription start site region 22612
Gm13292 2 11409031 to 11410030 999 - pseudogene predicted gene 13292
Gm13296 2 11420224 to 11421220 996 + pseudogene predicted gene 13296
Gm31990 2 11422527 to 11447447 24920 - lncRNA gene predicted gene, 31990
Tssr22613 2 11425702 to 11425705 3 - TSS region transcription start site region 22613
Pfkfb3 2 11471430 to 11554071 82641 - protein coding gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
Tssr22614 2 11473753 to 11473796 43 - TSS region transcription start site region 22614
Tssr22615 2 11473892 to 11473938 46 - TSS region transcription start site region 22615
Tssr22616 2 11473964 to 11473980 16 - TSS region transcription start site region 22616
Tssr22617 2 11473985 to 11473996 11 - TSS region transcription start site region 22617
Tssr22618 2 11474036 to 11474044 8 - TSS region transcription start site region 22618
Tssr22619 2 11474206 to 11474219 13 - TSS region transcription start site region 22619
Tssr22620 2 11475827 to 11475829 2 - TSS region transcription start site region 22620