Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:109493467-109954020

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm13925 2 109477003 to 109499200 22197 + pseudogene predicted gene 13925
Gm45346 2 109670908 to 109676591 5683 - antisense lncRNA gene predicted gene 45346
Gm20638 2 109673166 to 109674093 927 + unclassified non-coding RNA gene predicted gene 20638
Cpgi12032 2 109674010 to 109674468 458 CpG island CpG island 12032
Bdnf 2 109674700 to 109727007 52307 + protein coding gene brain derived neurotrophic factor
Cpgi12033 2 109676019 to 109676293 274 CpG island CpG island 12033
Cpgi12034 2 109677142 to 109678064 922 CpG island CpG island 12034
Cpgi12035 2 109692323 to 109692582 259 CpG island CpG island 12035
Tssr19301 2 109692524 to 109692544 20 + TSS region transcription start site region 19301
Cpgi12036 2 109693234 to 109694409 1175 CpG island CpG island 12036
Tssr19302 2 109693601 to 109693624 23 + TSS region transcription start site region 19302
Cpgi12037 2 109723467 to 109724020 553 CpG island CpG island 12037
Gm13932 2 109791928 to 109792534 606 - pseudogene predicted gene 13932
Gm39907 2 109857642 to 109890846 33204 - lncRNA gene predicted gene, 39907
Cpgi12038 2 109890552 to 109891380 828 CpG island CpG island 12038
Tssr19303 2 109890846 to 109890882 36 + TSS region transcription start site region 19303
Lin7c 2 109890878 to 109900937 10059 + protein coding gene lin-7 homolog C (C. elegans)
Tssr19304 2 109896307 to 109896318 11 + TSS region transcription start site region 19304
Tssr19305 2 109899299 to 109899303 4 + TSS region transcription start site region 19305
Tssr19306 2 109899968 to 109899972 4 + TSS region transcription start site region 19306
Platr8 2 109902396 to 109913319 10923 - lncRNA gene pluripotency associated transcript 8
Tssr25589 2 109913297 to 109913324 27 - TSS region transcription start site region 25589
Cpgi12039 2 109917468 to 109918861 1393 CpG island CpG island 12039
Tssr19307 2 109917571 to 109917592 21 + TSS region transcription start site region 19307
Tssr19308 2 109917596 to 109917638 42 + TSS region transcription start site region 19308
Tssr19309 2 109917639 to 109917656 17 + TSS region transcription start site region 19309
Lgr4 2 109917647 to 110014257 96610 + protein coding gene leucine-rich repeat-containing G protein-coupled receptor 4
Tssr19310 2 109917679 to 109917686 7 + TSS region transcription start site region 19310
Tssr19311 2 109917723 to 109917736 13 + TSS region transcription start site region 19311
D2Jcs2 2 109929176 to 109929387 211 DNA segment DNA segment, Chr 2, John C. Schimenti 2
Tssr19312 2 109929202 to 109929245 43 + TSS region transcription start site region 19312
Smdq2 2 109948120 to 109948262 142 QTL segregation of mitochondrial DNA QTL 2
D2Mit480 2 109948120 to 109948262 142 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 480