Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:108165738-110456747

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vss 2 101178143 to 108259759 7081616 heritable phenotypic marker variable spot and size
Gm13912 2 108183716 to 108291319 107603 - lincRNA gene predicted gene 13912
Cd8mts3 2 108259629 to 108259759 130 QTL CD8 memory T cell subset 3
D2Mit58 2 108259629 to 108259759 130 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 58
D2Ucl28 2 108365673 to 108365911 238 DNA segment DNA segment, Chr 2, University College London 28
Gm13916 2 108446457 to 108447084 627 - pseudogene predicted gene 13916
Gm13915 2 108572594 to 108573524 930 + pseudogene predicted gene 13915
Gm13913 2 108578130 to 108578389 259 - pseudogene predicted gene 13913
Tssr25583 2 108685832 to 108685840 8 - TSS region transcription start site region 25583
Tssr25584 2 108686024 to 108686025 1 - TSS region transcription start site region 25584
Gm13914 2 108733212 to 108734202 990 - pseudogene predicted gene 13914
Tssr590 2 108770967 to 108770976 9 + TSS region transcription start site region 590
D2Jcs1 2 108786520 to 108786762 242 DNA segment DNA segment, Chr 2, John C. Schimenti 1
Rpl35a-ps4 2 108874926 to 108875258 332 - pseudogene ribosomal protein 35A, pseudogene 4
Gm39905 2 108875480 to 108881051 5571 - lncRNA gene predicted gene, 39905
Tssr19298 2 108948768 to 108948780 12 + TSS region transcription start site region 19298
Gm13910 2 108948806 to 108950233 1427 + pseudogene predicted gene 13910
Gm13923 2 109022687 to 109025444 2757 + lincRNA gene predicted gene 13923
Mettl15 2 109092297 to 109280743 188446 - protein coding gene methyltransferase like 15
Gm24115 2 109148589 to 109148698 109 - miRNA gene predicted gene, 24115
Tssr25585 2 109167530 to 109167531 1 - TSS region transcription start site region 25585
D2Mit162.1 2 109207077 to 109207215 138 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 162.1
D2Mit162 2 109207292 to 109207431 139 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 162
Tssr25586 2 109224857 to 109224861 4 - TSS region transcription start site region 25586
Tssr25587 2 109278274 to 109278305 31 - TSS region transcription start site region 25587
Cpgi12031 2 109280499 to 109281261 762 CpG island CpG island 12031
Tssr25588 2 109280718 to 109280767 49 - TSS region transcription start site region 25588
Kif18a 2 109280738 to 109341747 61009 + protein coding gene kinesin family member 18A
Tssr19299 2 109280781 to 109280798 17 + TSS region transcription start site region 19299
Tssr19300 2 109280809 to 109280863 54 + TSS region transcription start site region 19300
Gm13924 2 109458248 to 109458733 485 - pseudogene predicted gene 13924
Gm13925 2 109477003 to 109499200 22197 + pseudogene predicted gene 13925
Gm45346 2 109670908 to 109676591 5683 - antisense lncRNA gene predicted gene 45346
Gm20638 2 109673166 to 109674093 927 + unclassified non-coding RNA gene predicted gene 20638
Cpgi12032 2 109674010 to 109674468 458 CpG island CpG island 12032
Bdnf 2 109674700 to 109727007 52307 + protein coding gene brain derived neurotrophic factor
Cpgi12033 2 109676019 to 109676293 274 CpG island CpG island 12033
Cpgi12034 2 109677142 to 109678064 922 CpG island CpG island 12034
Cpgi12035 2 109692323 to 109692582 259 CpG island CpG island 12035
Tssr19301 2 109692524 to 109692544 20 + TSS region transcription start site region 19301
Cpgi12036 2 109693234 to 109694409 1175 CpG island CpG island 12036
Tssr19302 2 109693601 to 109693624 23 + TSS region transcription start site region 19302
Cpgi12037 2 109723467 to 109724020 553 CpG island CpG island 12037
Gm13932 2 109791928 to 109792534 606 - pseudogene predicted gene 13932
Gm39907 2 109857642 to 109890846 33204 - lncRNA gene predicted gene, 39907
Cpgi12038 2 109890552 to 109891380 828 CpG island CpG island 12038
Tssr19303 2 109890846 to 109890882 36 + TSS region transcription start site region 19303
Lin7c 2 109890878 to 109900937 10059 + protein coding gene lin-7 homolog C (C. elegans)
Tssr19304 2 109896307 to 109896318 11 + TSS region transcription start site region 19304
Tssr19305 2 109899299 to 109899303 4 + TSS region transcription start site region 19305
Tssr19306 2 109899968 to 109899972 4 + TSS region transcription start site region 19306
Platr8 2 109902396 to 109913319 10923 - lncRNA gene pluripotency associated transcript 8
Tssr25589 2 109913297 to 109913324 27 - TSS region transcription start site region 25589
Cpgi12039 2 109917468 to 109918861 1393 CpG island CpG island 12039
Tssr19307 2 109917571 to 109917592 21 + TSS region transcription start site region 19307
Tssr19308 2 109917596 to 109917638 42 + TSS region transcription start site region 19308
Tssr19309 2 109917639 to 109917656 17 + TSS region transcription start site region 19309
Lgr4 2 109917647 to 110014257 96610 + protein coding gene leucine-rich repeat-containing G protein-coupled receptor 4
Tssr19310 2 109917679 to 109917686 7 + TSS region transcription start site region 19310
Tssr19311 2 109917723 to 109917736 13 + TSS region transcription start site region 19311
D2Jcs2 2 109929176 to 109929387 211 DNA segment DNA segment, Chr 2, John C. Schimenti 2
Tssr19312 2 109929202 to 109929245 43 + TSS region transcription start site region 19312
Smdq2 2 109948120 to 109948262 142 QTL segregation of mitochondrial DNA QTL 2
D2Mit480 2 109948120 to 109948262 142 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 480
Tssr19313 2 110003566 to 110003571 5 + TSS region transcription start site region 19313
Tssr19314 2 110011721 to 110011728 7 + TSS region transcription start site region 19314
Tssr19315 2 110013162 to 110013174 12 + TSS region transcription start site region 19315
Tssr19316 2 110013497 to 110013500 3 + TSS region transcription start site region 19316
Cpgi12040 2 110017585 to 110018281 696 CpG island CpG island 12040
Tssr19317 2 110017806 to 110017873 67 + TSS region transcription start site region 19317
Ccdc34 2 110017817 to 110173360 155543 + protein coding gene coiled-coil domain containing 34
Tssr19318 2 110017879 to 110017890 11 + TSS region transcription start site region 19318
Tssr19319 2 110021910 to 110021942 32 + TSS region transcription start site region 19319
Tssr19320 2 110021947 to 110021961 14 + TSS region transcription start site region 19320
Tssr19321 2 110021968 to 110021992 24 + TSS region transcription start site region 19321
Ccdc34os 2 110031250 to 110050479 19229 - antisense lncRNA gene coiled-coil domain containing 34, opposite strand
Tssr25590 2 110032370 to 110032381 11 - TSS region transcription start site region 25590
Tssr25591 2 110032387 to 110032428 41 - TSS region transcription start site region 25591
Tssr25592 2 110050468 to 110050482 14 - TSS region transcription start site region 25592
Tssr591 2 110050490 to 110050494 4 - TSS region transcription start site region 591
Gm30258 2 110074028 to 110089445 15417 + lncRNA gene predicted gene, 30258
D2Dcr57 2 110081240 to 110081338 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 57
Tssr19322 2 110135056 to 110135060 4 + TSS region transcription start site region 19322
Gm13936 2 110196889 to 110256131 59242 + antisense lncRNA gene predicted gene 13936
Gm13937 2 110209178 to 110210165 987 - pseudogene predicted gene 13937
Tssr25593 2 110210266 to 110210267 1 - TSS region transcription start site region 25593
Gm22997 2 110218003 to 110218109 106 + snRNA gene predicted gene, 22997
Bbox1 2 110264056 to 110314816 50760 - protein coding gene butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)
Gm30319 2 110302319 to 110386879 84560 + lncRNA gene predicted gene, 30319
Tssr25594 2 110305582 to 110305592 10 - TSS region transcription start site region 25594
Tssr25595 2 110305603 to 110305614 11 - TSS region transcription start site region 25595
Tssr25596 2 110305619 to 110305643 24 - TSS region transcription start site region 25596
Tssr25597 2 110305655 to 110305670 15 - TSS region transcription start site region 25597
Tssr25598 2 110305677 to 110305721 44 - TSS region transcription start site region 25598
Tssr25599 2 110305730 to 110305755 25 - TSS region transcription start site region 25599
Tssr25600 2 110305770 to 110305781 11 - TSS region transcription start site region 25600
Tssr25601 2 110314215 to 110314227 12 - TSS region transcription start site region 25601
Tssr25602 2 110314234 to 110314246 12 - TSS region transcription start site region 25602
Tssr25603 2 110314266 to 110314292 26 - TSS region transcription start site region 25603
Tssr25604 2 110314525 to 110314571 46 - TSS region transcription start site region 25604
Fibin 2 110360925 to 110362993 2068 - protein coding gene fin bud initiation factor homolog (zebrafish)
Cpgi12041 2 110362613 to 110363122 509 CpG island CpG island 12041
Tssr25605 2 110362904 to 110362913 9 - TSS region transcription start site region 25605
Tssr25606 2 110362955 to 110362963 8 - TSS region transcription start site region 25606
Tssr25607 2 110362985 to 110363001 16 - TSS region transcription start site region 25607
Tssr25608 2 110363092 to 110363102 10 - TSS region transcription start site region 25608
Tssr25609 2 110363115 to 110363130 15 - TSS region transcription start site region 25609
Tssr25610 2 110363135 to 110363151 16 - TSS region transcription start site region 25610
Tssr25611 2 110363157 to 110363181 24 - TSS region transcription start site region 25611
Gm13935 2 110418170 to 110419619 1449 - pseudogene predicted gene 13935
Tssr592 2 110419633 to 110419643 10 - TSS region transcription start site region 592
Tssr593 2 110422100 to 110422112 12 + TSS region transcription start site region 593
Tssr25612 2 110452753 to 110452754 1 - TSS region transcription start site region 25612