Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:106067411-109727524

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124 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vss 2 101178143 to 108259759 7081616 heritable phenotypic marker variable spot and size
Dcdc5 2 106080864 to 106408603 327739 + protein coding gene doublecortin domain containing 5
Tssr19274 2 106080925 to 106080930 5 + TSS region transcription start site region 19274
Tssr19275 2 106080993 to 106081004 11 + TSS region transcription start site region 19275
Tssr19276 2 106081027 to 106081035 8 + TSS region transcription start site region 19276
Cpgi12025 2 106183708 to 106183953 245 CpG island CpG island 12025
Tssr19277 2 106226449 to 106226458 9 + TSS region transcription start site region 19277
Gm14013 2 106265307 to 106265576 269 + pseudogene predicted gene 14013
Tssr19278 2 106304737 to 106304754 17 + TSS region transcription start site region 19278
D2Mit128 2 106320954 to 106321192 238 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 128
Gm46755 2 106372381 to 106430296 57915 - lncRNA gene predicted gene, 46755
Tssr19279 2 106382710 to 106382711 1 + TSS region transcription start site region 19279
Gm36036 2 106410026 to 106429092 19066 + lncRNA gene predicted gene, 36036
D2Mit13 2 106420336 to 106420525 189 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 13
D2Mit214 2 106420343 to 106420525 182 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 214
Gm14015 2 106463823 to 106523103 59280 - lincRNA gene predicted gene 14015
D2Mit100 2 106537368 to 106537479 111 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 100
Gm36544 2 106547309 to 106566843 19534 + lncRNA gene predicted gene, 36544
Gm14014 2 106574791 to 106580840 6049 - lincRNA gene predicted gene 14014
BB218582 2 106642917 to 106650364 7447 - lncRNA gene expressed sequence BB218582
Tssr25570 2 106650321 to 106650338 17 - TSS region transcription start site region 25570
Tssr25571 2 106650352 to 106650374 22 - TSS region transcription start site region 25571
Cpgi12026 2 106692964 to 106694702 1738 CpG island CpG island 12026
Tssr19280 2 106693122 to 106693139 17 + TSS region transcription start site region 19280
Tssr19281 2 106693165 to 106693174 9 + TSS region transcription start site region 19281
Tssr19282 2 106693185 to 106693278 93 + TSS region transcription start site region 19282
Tssr19283 2 106693408 to 106693425 17 + TSS region transcription start site region 19283
Tssr19284 2 106693445 to 106693499 54 + TSS region transcription start site region 19284
Mpped2 2 106693459 to 106868360 174901 + protein coding gene metallophosphoesterase domain containing 2
Tssr19285 2 106693502 to 106693520 18 + TSS region transcription start site region 19285
Tssr19286 2 106693526 to 106693575 49 + TSS region transcription start site region 19286
Tssr19287 2 106693577 to 106693602 25 + TSS region transcription start site region 19287
Cpgi12027 2 106694927 to 106695952 1025 CpG island CpG island 12027
Tssr19288 2 106695594 to 106695608 14 + TSS region transcription start site region 19288
C030026O17Rik 2 106732991 to 106733956 965 unclassified gene RIKEN cDNA C030026O17 gene
Gm29885 2 106733556 to 106739751 6195 - lncRNA gene predicted gene, 29885
Gm22813 2 106809336 to 106809458 122 + snoRNA gene predicted gene, 22813
C130023O10Rik 2 106818050 to 106831346 13296 + unclassified gene RIKEN cDNA C130023O10 gene
D2Dcr56 2 106909932 to 106910056 124 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 56
D2Mit206 2 106909939 to 106910082 143 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 206
Gm13901 2 106916771 to 106917238 467 + pseudogene predicted gene 13901
Gm13902 2 106926568 to 106927169 601 - pseudogene predicted gene 13902
Gm39902 2 106955781 to 106958634 2853 + lncRNA gene predicted gene, 39902
Arl14ep 2 106962527 to 106974424 11897 - protein coding gene ADP-ribosylation factor-like 14 effector protein
Tssr25572 2 106964302 to 106964305 3 - TSS region transcription start site region 25572
Tssr25573 2 106970367 to 106970374 7 - TSS region transcription start site region 25573
Tssr25574 2 106970393 to 106970407 14 - TSS region transcription start site region 25574
Cpgi12028 2 106974078 to 106974566 488 CpG island CpG island 12028
Tssr25575 2 106974332 to 106974360 28 - TSS region transcription start site region 25575
Tssr25576 2 106974361 to 106974381 20 - TSS region transcription start site region 25576
Tssr25577 2 106974383 to 106974422 39 - TSS region transcription start site region 25577
Tssr25578 2 106974433 to 106974465 32 - TSS region transcription start site region 25578
Tssr19289 2 106987216 to 106987217 1 + TSS region transcription start site region 19289
Gm13900 2 107000748 to 107001245 497 + pseudogene predicted gene 13900
Tssr25579 2 107005914 to 107005919 5 - TSS region transcription start site region 25579
Tssr19290 2 107010884 to 107010893 9 + TSS region transcription start site region 19290
Cpgi12029 2 107010889 to 107011056 167 CpG island CpG island 12029
Gm13904 2 107010938 to 107011774 836 + pseudogene predicted gene 13904
Tssr19291 2 107011050 to 107011070 20 + TSS region transcription start site region 19291
Fshb 2 107056140 to 107059656 3516 - protein coding gene follicle stimulating hormone beta
Tssr25580 2 107057320 to 107057323 3 - TSS region transcription start site region 25580
Tssr25581 2 107058979 to 107058980 1 - TSS region transcription start site region 25581
Tssr25582 2 107059646 to 107059658 12 - TSS region transcription start site region 25582
Gm24885 2 107097206 to 107097475 269 - ribozyme gene predicted gene, 24885
Gm13903 2 107123768 to 107123960 192 - pseudogene predicted gene 13903
Cpgi12030 2 107290379 to 107290797 418 CpG island CpG island 12030
Tssr19292 2 107290578 to 107290586 8 + TSS region transcription start site region 19292
Tssr19293 2 107290590 to 107290660 70 + TSS region transcription start site region 19293
Kcna4 2 107290639 to 107298502 7863 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 4
Tssr19294 2 107290667 to 107290678 11 + TSS region transcription start site region 19294
Tssr19295 2 107306528 to 107306531 3 + TSS region transcription start site region 19295
Tssr19296 2 107320081 to 107320083 2 + TSS region transcription start site region 19296
C030011L09Rik 2 107325660 to 107326794 1134 unclassified gene RIKEN cDNA C030011L09 gene
Gm9864 2 107595630 to 107600539 4909 - pseudogene predicted gene 9864
Gm39903 2 107729531 to 107798412 68881 + lncRNA gene predicted gene, 39903
Tssr589 2 107793229 to 107793233 4 + TSS region transcription start site region 589
Gm23439 2 107886508 to 107886639 131 - snoRNA gene predicted gene, 23439
D2Mit211 2 107897293 to 107897381 88 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 211
D2Mit211.2 2 107897411 to 107897524 113 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 211.2
Gm39904 2 107923326 to 107930302 6976 + lncRNA gene predicted gene, 39904
Tssr19297 2 107956023 to 107956043 20 + TSS region transcription start site region 19297
Gm23749 2 108079912 to 108080042 130 - snoRNA gene predicted gene, 23749
Gm13912 2 108183716 to 108291319 107603 - lincRNA gene predicted gene 13912
Cd8mts3 2 108259629 to 108259759 130 QTL CD8 memory T cell subset 3
D2Mit58 2 108259629 to 108259759 130 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 58
D2Ucl28 2 108365673 to 108365911 238 DNA segment DNA segment, Chr 2, University College London 28
Gm13916 2 108446457 to 108447084 627 - pseudogene predicted gene 13916
Gm13915 2 108572594 to 108573524 930 + pseudogene predicted gene 13915
Gm13913 2 108578130 to 108578389 259 - pseudogene predicted gene 13913
Tssr25583 2 108685832 to 108685840 8 - TSS region transcription start site region 25583
Tssr25584 2 108686024 to 108686025 1 - TSS region transcription start site region 25584
Gm13914 2 108733212 to 108734202 990 - pseudogene predicted gene 13914
Tssr590 2 108770967 to 108770976 9 + TSS region transcription start site region 590
D2Jcs1 2 108786520 to 108786762 242 DNA segment DNA segment, Chr 2, John C. Schimenti 1
Rpl35a-ps4 2 108874926 to 108875258 332 - pseudogene ribosomal protein 35A, pseudogene 4
Gm39905 2 108875480 to 108881051 5571 - lncRNA gene predicted gene, 39905
Tssr19298 2 108948768 to 108948780 12 + TSS region transcription start site region 19298
Gm13910 2 108948806 to 108950233 1427 + pseudogene predicted gene 13910
Gm13923 2 109022687 to 109025444 2757 + lincRNA gene predicted gene 13923
Mettl15 2 109092297 to 109280743 188446 - protein coding gene methyltransferase like 15
Gm24115 2 109148589 to 109148698 109 - miRNA gene predicted gene, 24115
Tssr25585 2 109167530 to 109167531 1 - TSS region transcription start site region 25585
D2Mit162.1 2 109207077 to 109207215 138 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 162.1
D2Mit162 2 109207292 to 109207431 139 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 162
Tssr25586 2 109224857 to 109224861 4 - TSS region transcription start site region 25586
Tssr25587 2 109278274 to 109278305 31 - TSS region transcription start site region 25587
Cpgi12031 2 109280499 to 109281261 762 CpG island CpG island 12031
Tssr25588 2 109280718 to 109280767 49 - TSS region transcription start site region 25588
Kif18a 2 109280738 to 109341747 61009 + protein coding gene kinesin family member 18A
Tssr19299 2 109280781 to 109280798 17 + TSS region transcription start site region 19299
Tssr19300 2 109280809 to 109280863 54 + TSS region transcription start site region 19300
Gm13924 2 109458248 to 109458733 485 - pseudogene predicted gene 13924
Gm13925 2 109477003 to 109499200 22197 + pseudogene predicted gene 13925
Gm45346 2 109670908 to 109676591 5683 - antisense lncRNA gene predicted gene 45346
Gm20638 2 109673166 to 109674093 927 + unclassified non-coding RNA gene predicted gene 20638
Cpgi12032 2 109674010 to 109674468 458 CpG island CpG island 12032
Bdnf 2 109674700 to 109727007 52307 + protein coding gene brain derived neurotrophic factor
Cpgi12033 2 109676019 to 109676293 274 CpG island CpG island 12033
Cpgi12034 2 109677142 to 109678064 922 CpG island CpG island 12034
Cpgi12035 2 109692323 to 109692582 259 CpG island CpG island 12035
Tssr19301 2 109692524 to 109692544 20 + TSS region transcription start site region 19301
Cpgi12036 2 109693234 to 109694409 1175 CpG island CpG island 12036
Tssr19302 2 109693601 to 109693624 23 + TSS region transcription start site region 19302
Cpgi12037 2 109723467 to 109724020 553 CpG island CpG island 12037