Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:105590864-106898603

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pax6os1 2 105536080 to 105670330 134250 - antisense lncRNA gene paired box 6 opposite strand 1
Gm35946 2 105611282 to 105620482 9200 + lncRNA gene predicted gene, 35946
Paupar 2 105657862 to 105661343 3481 - lincRNA gene Pax6 upstream antisense RNA
Cpgi12014 2 105659961 to 105660323 362 CpG island CpG island 12014
Tssr19248 2 105660773 to 105660785 12 + TSS region transcription start site region 19248
Tssr19249 2 105660800 to 105660812 12 + TSS region transcription start site region 19249
Cpgi12015 2 105667169 to 105667340 171 CpG island CpG island 12015
Cpgi12016 2 105667664 to 105667973 309 CpG island CpG island 12016
Cpgi12017 2 105668646 to 105669143 497 CpG island CpG island 12017
Tssr19250 2 105668888 to 105668914 26 + TSS region transcription start site region 19250
Pax6 2 105668900 to 105697364 28464 + protein coding gene paired box 6
Tssr19251 2 105668943 to 105668950 7 + TSS region transcription start site region 19251
Cpgi12018 2 105669373 to 105670321 948 CpG island CpG island 12018
Tssr25562 2 105670291 to 105670298 7 - TSS region transcription start site region 25562
Tssr25563 2 105670301 to 105670322 21 - TSS region transcription start site region 25563
Cpgi12019 2 105672394 to 105672591 197 CpG island CpG island 12019
Tssr25564 2 105673978 to 105673981 3 - TSS region transcription start site region 25564
Tssr19252 2 105674406 to 105674422 16 + TSS region transcription start site region 19252
Tssr19253 2 105674426 to 105674437 11 + TSS region transcription start site region 19253
Tssr19254 2 105674543 to 105674558 15 + TSS region transcription start site region 19254
Cpgi12020 2 105674597 to 105676885 2288 CpG island CpG island 12020
Tssr25565 2 105675281 to 105675300 19 - TSS region transcription start site region 25565
Tssr19255 2 105675429 to 105675449 20 + TSS region transcription start site region 19255
Tssr19256 2 105675478 to 105675504 26 + TSS region transcription start site region 19256
Tssr19257 2 105675615 to 105675623 8 + TSS region transcription start site region 19257
Tssr19258 2 105675636 to 105675651 15 + TSS region transcription start site region 19258
Tssr19259 2 105675669 to 105675680 11 + TSS region transcription start site region 19259
Tssr19260 2 105675686 to 105675695 9 + TSS region transcription start site region 19260
Tssr19261 2 105675706 to 105675716 10 + TSS region transcription start site region 19261
Cpgi12021 2 105681157 to 105681688 531 CpG island CpG island 12021
Cpgi12022 2 105682091 to 105682416 325 CpG island CpG island 12022
Tssr19262 2 105682194 to 105682205 11 + TSS region transcription start site region 19262
Tssr19263 2 105682488 to 105682491 3 + TSS region transcription start site region 19263
Tssr19264 2 105682505 to 105682530 25 + TSS region transcription start site region 19264
Tssr19265 2 105682683 to 105682687 4 + TSS region transcription start site region 19265
Tssr19266 2 105682728 to 105682745 17 + TSS region transcription start site region 19266
Tssr19267 2 105682968 to 105682977 9 + TSS region transcription start site region 19267
Tssr19268 2 105683014 to 105683018 4 + TSS region transcription start site region 19268
Tssr588 2 105683566 to 105683594 28 + TSS region transcription start site region 588
Tssr19269 2 105689578 to 105689587 9 + TSS region transcription start site region 19269
Tssr19270 2 105691588 to 105691596 8 + TSS region transcription start site region 19270
Elp4 2 105701027 to 105904564 203537 - protein coding gene elongator acetyltransferase complex subunit 4
Gm13954 2 105708999 to 105710098 1099 + antisense lncRNA gene predicted gene 13954
A130004G07Rik 2 105736548 to 105741861 5313 unclassified non-coding RNA gene RIKEN cDNA A130004G07 gene
Tssr25566 2 105787547 to 105787550 3 - TSS region transcription start site region 25566
Cpgi12023 2 105904308 to 105904882 574 CpG island CpG island 12023
Tssr25567 2 105904484 to 105904527 43 - TSS region transcription start site region 25567
Tssr19271 2 105904629 to 105904685 56 + TSS region transcription start site region 19271
Immp1l 2 105904638 to 105965558 60920 + protein coding gene IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)
Gm4415 2 105946096 to 105950989 4893 protein coding gene predicted gene 4415
Tssr25568 2 105959565 to 105959568 3 - TSS region transcription start site region 25568
Dnajc24 2 105966709 to 106003549 36840 - protein coding gene DnaJ heat shock protein family (Hsp40) member C24
Gm22002 2 105992757 to 105992881 124 + miRNA gene predicted gene, 22002
n-R5s201 2 105997032 to 105997147 115 + rRNA gene nuclear encoded rRNA 5S 201
Cpgi12024 2 106002948 to 106003514 566 CpG island CpG island 12024
Tssr25569 2 106003181 to 106003277 96 - TSS region transcription start site region 25569
Tssr19272 2 106003327 to 106003340 13 + TSS region transcription start site region 19272
Tssr19273 2 106003353 to 106003386 33 + TSS region transcription start site region 19273
Gm13992 2 106015200 to 106015355 155 + pseudogene predicted gene 13992
D2Dcr55 2 106019122 to 106019223 101 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 55
Gm9342 2 106038218 to 106053528 15310 + pseudogene predicted gene 9342
Gm29053 2 106038463 to 106040496 2033 - lincRNA gene predicted gene 29053
Dcdc5 2 106080864 to 106408603 327739 + protein coding gene doublecortin domain containing 5
Tssr19274 2 106080925 to 106080930 5 + TSS region transcription start site region 19274
Tssr19275 2 106080993 to 106081004 11 + TSS region transcription start site region 19275
Tssr19276 2 106081027 to 106081035 8 + TSS region transcription start site region 19276
Cpgi12025 2 106183708 to 106183953 245 CpG island CpG island 12025
Tssr19277 2 106226449 to 106226458 9 + TSS region transcription start site region 19277
Gm14013 2 106265307 to 106265576 269 + pseudogene predicted gene 14013
Tssr19278 2 106304737 to 106304754 17 + TSS region transcription start site region 19278
D2Mit128 2 106320954 to 106321192 238 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 128
Gm46755 2 106372381 to 106430296 57915 - lncRNA gene predicted gene, 46755
Tssr19279 2 106382710 to 106382711 1 + TSS region transcription start site region 19279
Gm36036 2 106410026 to 106429092 19066 + lncRNA gene predicted gene, 36036
D2Mit13 2 106420336 to 106420525 189 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 13
D2Mit214 2 106420343 to 106420525 182 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 214
Gm14015 2 106463823 to 106523103 59280 - lincRNA gene predicted gene 14015
D2Mit100 2 106537368 to 106537479 111 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 100
Gm36544 2 106547309 to 106566843 19534 + lncRNA gene predicted gene, 36544
Gm14014 2 106574791 to 106580840 6049 - lincRNA gene predicted gene 14014
BB218582 2 106642917 to 106650364 7447 - lncRNA gene expressed sequence BB218582
Tssr25570 2 106650321 to 106650338 17 - TSS region transcription start site region 25570
Tssr25571 2 106650352 to 106650374 22 - TSS region transcription start site region 25571
Cpgi12026 2 106692964 to 106694702 1738 CpG island CpG island 12026
Tssr19280 2 106693122 to 106693139 17 + TSS region transcription start site region 19280
Tssr19281 2 106693165 to 106693174 9 + TSS region transcription start site region 19281
Tssr19282 2 106693185 to 106693278 93 + TSS region transcription start site region 19282
Tssr19283 2 106693408 to 106693425 17 + TSS region transcription start site region 19283
Tssr19284 2 106693445 to 106693499 54 + TSS region transcription start site region 19284
Mpped2 2 106693459 to 106868360 174901 + protein coding gene metallophosphoesterase domain containing 2
Tssr19285 2 106693502 to 106693520 18 + TSS region transcription start site region 19285
Tssr19286 2 106693526 to 106693575 49 + TSS region transcription start site region 19286
Tssr19287 2 106693577 to 106693602 25 + TSS region transcription start site region 19287
Cpgi12027 2 106694927 to 106695952 1025 CpG island CpG island 12027
Tssr19288 2 106695594 to 106695608 14 + TSS region transcription start site region 19288
C030026O17Rik 2 106732991 to 106733956 965 unclassified gene RIKEN cDNA C030026O17 gene
Gm29885 2 106733556 to 106739751 6195 - lncRNA gene predicted gene, 29885
Gm22813 2 106809336 to 106809458 122 + snoRNA gene predicted gene, 22813
C130023O10Rik 2 106818050 to 106831346 13296 + unclassified gene RIKEN cDNA C130023O10 gene