Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:105221548-106256861

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi12012 2 105224218 to 105224694 476 CpG island CpG island 12012
Tssr19242 2 105224287 to 105224308 21 + TSS region transcription start site region 19242
Tssr19243 2 105224314 to 105224357 43 + TSS region transcription start site region 19243
Them7 2 105224320 to 105379796 155476 + protein coding gene thioesterase superfamily member 7
D2Mit387 2 105262287 to 105262412 125 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 387
Femwf4 2 105313078 to 105313225 147 QTL femur work to failure 4
D2Mit44 2 105313078 to 105313225 147 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 44
Hbnr5 2 105313225 to 31324555 -73988670 QTL Heligmosomoides bakeri nematode resistance 5
D2Mit442 2 105357510 to 105357636 126 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 442
Tssr19244 2 105372973 to 105373010 37 + TSS region transcription start site region 19244
Rcn1 2 105386291 to 105399319 13028 - protein coding gene reticulocalbin 1
Cpgi12013 2 105398640 to 105399715 1075 CpG island CpG island 12013
Tssr25554 2 105399208 to 105399243 35 - TSS region transcription start site region 25554
Tssr25555 2 105399249 to 105399275 26 - TSS region transcription start site region 25555
Tssr25556 2 105399286 to 105399300 14 - TSS region transcription start site region 25556
Tssr25557 2 105399308 to 105399315 7 - TSS region transcription start site region 25557
Tssr25558 2 105399355 to 105399358 3 - TSS region transcription start site region 25558
Tssr25559 2 105399372 to 105399379 7 - TSS region transcription start site region 25559
Tssr25560 2 105399390 to 105399421 31 - TSS region transcription start site region 25560
Tssr25561 2 105399594 to 105399642 48 - TSS region transcription start site region 25561
Tssr19245 2 105425960 to 105425963 3 + TSS region transcription start site region 19245
Tssr19246 2 105425978 to 105425983 5 + TSS region transcription start site region 19246
Tssr19247 2 105425993 to 105425999 6 + TSS region transcription start site region 19247
Gm39900 2 105429368 to 105441465 12097 + lncRNA gene predicted gene, 39900
4930527A07Rik 2 105476501 to 105477357 856 + lincRNA gene RIKEN cDNA 4930527A07 gene
D2Mit185 2 105495630 to 105495777 147 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 185
D2Dcr54 2 105495637 to 105495773 136 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 54
Pax6os1 2 105536080 to 105670330 134250 - antisense lncRNA gene paired box 6 opposite strand 1
Gm13890 2 105537093 to 105537482 389 - pseudogene predicted gene 13890
Rpl10-ps1 2 105554201 to 105554845 644 - pseudogene ribosomal protein L10, pseudogene 1
Gm35946 2 105611282 to 105620482 9200 + lncRNA gene predicted gene, 35946
Paupar 2 105657862 to 105661343 3481 - lincRNA gene Pax6 upstream antisense RNA
Cpgi12014 2 105659961 to 105660323 362 CpG island CpG island 12014
Tssr19248 2 105660773 to 105660785 12 + TSS region transcription start site region 19248
Tssr19249 2 105660800 to 105660812 12 + TSS region transcription start site region 19249
Cpgi12015 2 105667169 to 105667340 171 CpG island CpG island 12015
Cpgi12016 2 105667664 to 105667973 309 CpG island CpG island 12016
Cpgi12017 2 105668646 to 105669143 497 CpG island CpG island 12017
Tssr19250 2 105668888 to 105668914 26 + TSS region transcription start site region 19250
Pax6 2 105668900 to 105697364 28464 + protein coding gene paired box 6
Tssr19251 2 105668943 to 105668950 7 + TSS region transcription start site region 19251
Cpgi12018 2 105669373 to 105670321 948 CpG island CpG island 12018
Tssr25562 2 105670291 to 105670298 7 - TSS region transcription start site region 25562
Tssr25563 2 105670301 to 105670322 21 - TSS region transcription start site region 25563
Cpgi12019 2 105672394 to 105672591 197 CpG island CpG island 12019
Tssr25564 2 105673978 to 105673981 3 - TSS region transcription start site region 25564
Tssr19252 2 105674406 to 105674422 16 + TSS region transcription start site region 19252
Tssr19253 2 105674426 to 105674437 11 + TSS region transcription start site region 19253
Tssr19254 2 105674543 to 105674558 15 + TSS region transcription start site region 19254
Cpgi12020 2 105674597 to 105676885 2288 CpG island CpG island 12020
Tssr25565 2 105675281 to 105675300 19 - TSS region transcription start site region 25565
Tssr19255 2 105675429 to 105675449 20 + TSS region transcription start site region 19255
Tssr19256 2 105675478 to 105675504 26 + TSS region transcription start site region 19256
Tssr19257 2 105675615 to 105675623 8 + TSS region transcription start site region 19257
Tssr19258 2 105675636 to 105675651 15 + TSS region transcription start site region 19258
Tssr19259 2 105675669 to 105675680 11 + TSS region transcription start site region 19259
Tssr19260 2 105675686 to 105675695 9 + TSS region transcription start site region 19260
Tssr19261 2 105675706 to 105675716 10 + TSS region transcription start site region 19261
Cpgi12021 2 105681157 to 105681688 531 CpG island CpG island 12021
Cpgi12022 2 105682091 to 105682416 325 CpG island CpG island 12022
Tssr19262 2 105682194 to 105682205 11 + TSS region transcription start site region 19262
Tssr19263 2 105682488 to 105682491 3 + TSS region transcription start site region 19263
Tssr19264 2 105682505 to 105682530 25 + TSS region transcription start site region 19264
Tssr19265 2 105682683 to 105682687 4 + TSS region transcription start site region 19265
Tssr19266 2 105682728 to 105682745 17 + TSS region transcription start site region 19266
Tssr19267 2 105682968 to 105682977 9 + TSS region transcription start site region 19267
Tssr19268 2 105683014 to 105683018 4 + TSS region transcription start site region 19268
Tssr588 2 105683566 to 105683594 28 + TSS region transcription start site region 588
Tssr19269 2 105689578 to 105689587 9 + TSS region transcription start site region 19269
Tssr19270 2 105691588 to 105691596 8 + TSS region transcription start site region 19270
Elp4 2 105701027 to 105904564 203537 - protein coding gene elongator acetyltransferase complex subunit 4
Gm13954 2 105708999 to 105710098 1099 + antisense lncRNA gene predicted gene 13954
A130004G07Rik 2 105736548 to 105741861 5313 unclassified non-coding RNA gene RIKEN cDNA A130004G07 gene
Tssr25566 2 105787547 to 105787550 3 - TSS region transcription start site region 25566
Cpgi12023 2 105904308 to 105904882 574 CpG island CpG island 12023
Tssr25567 2 105904484 to 105904527 43 - TSS region transcription start site region 25567
Tssr19271 2 105904629 to 105904685 56 + TSS region transcription start site region 19271
Immp1l 2 105904638 to 105965558 60920 + protein coding gene IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)
Gm4415 2 105946096 to 105950989 4893 protein coding gene predicted gene 4415
Tssr25568 2 105959565 to 105959568 3 - TSS region transcription start site region 25568
Dnajc24 2 105966709 to 106003549 36840 - protein coding gene DnaJ heat shock protein family (Hsp40) member C24
Gm22002 2 105992757 to 105992881 124 + miRNA gene predicted gene, 22002
n-R5s201 2 105997032 to 105997147 115 + rRNA gene nuclear encoded rRNA 5S 201
Cpgi12024 2 106002948 to 106003514 566 CpG island CpG island 12024
Tssr25569 2 106003181 to 106003277 96 - TSS region transcription start site region 25569
Tssr19272 2 106003327 to 106003340 13 + TSS region transcription start site region 19272
Tssr19273 2 106003353 to 106003386 33 + TSS region transcription start site region 19273
Gm13992 2 106015200 to 106015355 155 + pseudogene predicted gene 13992
D2Dcr55 2 106019122 to 106019223 101 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 55
Gm9342 2 106038218 to 106053528 15310 + pseudogene predicted gene 9342
Gm29053 2 106038463 to 106040496 2033 - lincRNA gene predicted gene 29053
Dcdc5 2 106080864 to 106408603 327739 + protein coding gene doublecortin domain containing 5
Tssr19274 2 106080925 to 106080930 5 + TSS region transcription start site region 19274
Tssr19275 2 106080993 to 106081004 11 + TSS region transcription start site region 19275
Tssr19276 2 106081027 to 106081035 8 + TSS region transcription start site region 19276
Cpgi12025 2 106183708 to 106183953 245 CpG island CpG island 12025
Tssr19277 2 106226449 to 106226458 9 + TSS region transcription start site region 19277